Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1578 and Dsui_1579 are separated by 214 nucleotides Dsui_1579 and Dsui_1580 are separated by 186 nucleotides
Dsui_1578: Dsui_1578 - pyruvate dehydrogenase E1 component, homodimeric type, at 1,652,262 to 1,654,934
_1578
Dsui_1579: Dsui_1579 - ABC-type branched-chain amino acid transport system, periplasmic component, at 1,655,149 to 1,656,357
_1579
Dsui_1580: Dsui_1580 - PAS domain S-box, at 1,656,544 to 1,659,249
_1580
Position (kb)
1655
1656
1657 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1654.248 kb on + strand, within Dsui_1578 at 1654.389 kb on - strand, within Dsui_1578 at 1654.408 kb on + strand, within Dsui_1578 at 1654.781 kb on - strand at 1654.837 kb on - strand at 1654.985 kb on - strand at 1655.023 kb on - strand at 1655.073 kb on - strand at 1655.073 kb on - strand at 1655.083 kb on - strand at 1655.091 kb on - strand at 1655.155 kb on - strand at 1655.198 kb on + strand at 1655.203 kb on + strand at 1655.264 kb on - strand at 1655.342 kb on - strand, within Dsui_1579 at 1655.400 kb on - strand, within Dsui_1579 at 1655.405 kb on + strand, within Dsui_1579 at 1655.478 kb on - strand, within Dsui_1579 at 1655.523 kb on + strand, within Dsui_1579 at 1655.536 kb on - strand, within Dsui_1579 at 1655.705 kb on + strand at 1655.722 kb on - strand, within Dsui_1579 at 1655.732 kb on - strand, within Dsui_1579 at 1655.916 kb on - strand, within Dsui_1579 at 1656.019 kb on - strand, within Dsui_1579 at 1656.058 kb on + strand, within Dsui_1579 at 1656.158 kb on + strand at 1656.204 kb on + strand, within Dsui_1579 at 1656.208 kb on + strand at 1656.279 kb on + strand at 1656.297 kb on - strand at 1656.359 kb on + strand at 1656.377 kb on + strand at 1656.442 kb on - strand at 1656.552 kb on - strand at 1656.552 kb on - strand at 1656.614 kb on - strand at 1656.625 kb on - strand at 1656.653 kb on + strand at 1656.841 kb on + strand, within Dsui_1580 at 1656.891 kb on - strand at 1656.953 kb on + strand, within Dsui_1580 at 1656.961 kb on - strand at 1656.961 kb on - strand, within Dsui_1580 at 1656.981 kb on + strand, within Dsui_1580 at 1657.049 kb on + strand, within Dsui_1580 at 1657.219 kb on - strand at 1657.320 kb on + strand, within Dsui_1580
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 1,654,248 + Dsui_1578 0.74 -0.7 1,654,389 - Dsui_1578 0.80 -2.2 1,654,408 + Dsui_1578 0.80 -2.1 1,654,781 - -3.8 1,654,837 - -2.3 1,654,985 - -0.2 1,655,023 - +0.6 1,655,073 - +0.3 1,655,073 - +0.7 1,655,083 - +0.9 1,655,091 - +0.2 1,655,155 - -0.7 1,655,198 + +1.1 1,655,203 + -0.1 1,655,264 - +0.2 1,655,342 - Dsui_1579 0.16 +0.5 1,655,400 - Dsui_1579 0.21 -1.9 1,655,405 + Dsui_1579 0.21 +1.4 1,655,478 - Dsui_1579 0.27 +0.1 1,655,523 + Dsui_1579 0.31 +0.6 1,655,536 - Dsui_1579 0.32 -1.0 1,655,705 + -0.1 1,655,722 - Dsui_1579 0.47 -0.6 1,655,732 - Dsui_1579 0.48 -0.8 1,655,916 - Dsui_1579 0.63 -0.6 1,656,019 - Dsui_1579 0.72 +0.2 1,656,058 + Dsui_1579 0.75 +0.5 1,656,158 + -0.4 1,656,204 + Dsui_1579 0.87 +0.1 1,656,208 + +1.9 1,656,279 + +0.2 1,656,297 - -0.6 1,656,359 + +2.3 1,656,377 + +0.2 1,656,442 - +0.9 1,656,552 - -0.6 1,656,552 - +0.9 1,656,614 - -0.1 1,656,625 - +0.9 1,656,653 + -0.8 1,656,841 + Dsui_1580 0.11 +0.0 1,656,891 - +0.9 1,656,953 + Dsui_1580 0.15 +0.1 1,656,961 - +1.3 1,656,961 - Dsui_1580 0.15 +0.0 1,656,981 + Dsui_1580 0.16 +1.0 1,657,049 + Dsui_1580 0.19 -0.0 1,657,219 - +0.9 1,657,320 + Dsui_1580 0.29 -0.2
Or see this region's nucleotide sequence