Strain Fitness in Dechlorosoma suillum PS around Dsui_1579

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1578 and Dsui_1579 are separated by 214 nucleotidesDsui_1579 and Dsui_1580 are separated by 186 nucleotides Dsui_1578: Dsui_1578 - pyruvate dehydrogenase E1 component, homodimeric type, at 1,652,262 to 1,654,934 _1578 Dsui_1579: Dsui_1579 - ABC-type branched-chain amino acid transport system, periplasmic component, at 1,655,149 to 1,656,357 _1579 Dsui_1580: Dsui_1580 - PAS domain S-box, at 1,656,544 to 1,659,249 _1580 Position (kb) 1655 1656 1657Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1654.248 kb on + strand, within Dsui_1578at 1654.389 kb on - strand, within Dsui_1578at 1654.408 kb on + strand, within Dsui_1578at 1654.781 kb on - strandat 1654.837 kb on - strandat 1654.985 kb on - strandat 1655.023 kb on - strandat 1655.073 kb on - strandat 1655.073 kb on - strandat 1655.083 kb on - strandat 1655.091 kb on - strandat 1655.155 kb on - strandat 1655.198 kb on + strandat 1655.203 kb on + strandat 1655.264 kb on - strandat 1655.342 kb on - strand, within Dsui_1579at 1655.400 kb on - strand, within Dsui_1579at 1655.405 kb on + strand, within Dsui_1579at 1655.478 kb on - strand, within Dsui_1579at 1655.523 kb on + strand, within Dsui_1579at 1655.536 kb on - strand, within Dsui_1579at 1655.705 kb on + strandat 1655.722 kb on - strand, within Dsui_1579at 1655.732 kb on - strand, within Dsui_1579at 1655.916 kb on - strand, within Dsui_1579at 1656.019 kb on - strand, within Dsui_1579at 1656.058 kb on + strand, within Dsui_1579at 1656.158 kb on + strandat 1656.204 kb on + strand, within Dsui_1579at 1656.208 kb on + strandat 1656.279 kb on + strandat 1656.297 kb on - strandat 1656.359 kb on + strandat 1656.377 kb on + strandat 1656.442 kb on - strandat 1656.552 kb on - strandat 1656.552 kb on - strandat 1656.614 kb on - strandat 1656.625 kb on - strandat 1656.653 kb on + strandat 1656.841 kb on + strand, within Dsui_1580at 1656.891 kb on - strandat 1656.953 kb on + strand, within Dsui_1580at 1656.961 kb on - strandat 1656.961 kb on - strand, within Dsui_1580at 1656.981 kb on + strand, within Dsui_1580at 1657.049 kb on + strand, within Dsui_1580at 1657.219 kb on - strandat 1657.320 kb on + strand, within Dsui_1580

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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1,654,248 + Dsui_1578 0.74 -0.7
1,654,389 - Dsui_1578 0.80 -2.2
1,654,408 + Dsui_1578 0.80 -2.1
1,654,781 - -3.8
1,654,837 - -2.3
1,654,985 - -0.2
1,655,023 - +0.6
1,655,073 - +0.3
1,655,073 - +0.7
1,655,083 - +0.9
1,655,091 - +0.2
1,655,155 - -0.7
1,655,198 + +1.1
1,655,203 + -0.1
1,655,264 - +0.2
1,655,342 - Dsui_1579 0.16 +0.5
1,655,400 - Dsui_1579 0.21 -1.9
1,655,405 + Dsui_1579 0.21 +1.4
1,655,478 - Dsui_1579 0.27 +0.1
1,655,523 + Dsui_1579 0.31 +0.6
1,655,536 - Dsui_1579 0.32 -1.0
1,655,705 + -0.1
1,655,722 - Dsui_1579 0.47 -0.6
1,655,732 - Dsui_1579 0.48 -0.8
1,655,916 - Dsui_1579 0.63 -0.6
1,656,019 - Dsui_1579 0.72 +0.2
1,656,058 + Dsui_1579 0.75 +0.5
1,656,158 + -0.4
1,656,204 + Dsui_1579 0.87 +0.1
1,656,208 + +1.9
1,656,279 + +0.2
1,656,297 - -0.6
1,656,359 + +2.3
1,656,377 + +0.2
1,656,442 - +0.9
1,656,552 - -0.6
1,656,552 - +0.9
1,656,614 - -0.1
1,656,625 - +0.9
1,656,653 + -0.8
1,656,841 + Dsui_1580 0.11 +0.0
1,656,891 - +0.9
1,656,953 + Dsui_1580 0.15 +0.1
1,656,961 - +1.3
1,656,961 - Dsui_1580 0.15 +0.0
1,656,981 + Dsui_1580 0.16 +1.0
1,657,049 + Dsui_1580 0.19 -0.0
1,657,219 - +0.9
1,657,320 + Dsui_1580 0.29 -0.2

Or see this region's nucleotide sequence