Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1329 and Dsui_1330 are separated by 500 nucleotides Dsui_1330 and Dsui_1331 are separated by 9 nucleotides Dsui_1331 and Dsui_1332 are separated by 182 nucleotides Dsui_1332 and Dsui_1333 are separated by 20 nucleotides
Dsui_1329: Dsui_1329 - putative redox protein, regulator of disulfide bond formation, at 1,388,031 to 1,388,447
_1329
Dsui_1330: Dsui_1330 - ribosomal protein L13, bacterial type, at 1,388,948 to 1,389,376
_1330
Dsui_1331: Dsui_1331 - ribosomal protein S9, at 1,389,386 to 1,389,778
_1331
Dsui_1332: Dsui_1332 - hypothetical protein, at 1,389,961 to 1,390,722
_1332
Dsui_1333: Dsui_1333 - Integral membrane protein CcmA involved in cell shape determination, at 1,390,743 to 1,391,153
_1333
Position (kb)
1389
1390 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1388.388 kb on + strand, within Dsui_1329 at 1388.388 kb on + strand, within Dsui_1329 at 1388.391 kb on - strand, within Dsui_1329 at 1388.434 kb on + strand at 1388.435 kb on - strand at 1388.442 kb on - strand at 1388.442 kb on - strand at 1388.448 kb on + strand at 1388.448 kb on + strand at 1388.455 kb on - strand at 1388.455 kb on - strand at 1388.456 kb on - strand at 1388.456 kb on - strand at 1388.480 kb on + strand at 1388.495 kb on - strand at 1388.495 kb on - strand at 1388.503 kb on + strand at 1388.505 kb on + strand at 1388.508 kb on + strand at 1388.508 kb on + strand at 1388.508 kb on + strand at 1388.508 kb on - strand at 1388.508 kb on - strand at 1388.523 kb on - strand at 1388.533 kb on + strand at 1388.541 kb on + strand at 1388.543 kb on + strand at 1388.543 kb on + strand at 1388.543 kb on + strand at 1388.543 kb on + strand at 1388.543 kb on + strand at 1388.543 kb on + strand at 1388.543 kb on + strand at 1388.549 kb on - strand at 1388.551 kb on - strand at 1388.551 kb on - strand at 1388.551 kb on - strand at 1388.551 kb on - strand at 1388.551 kb on - strand at 1388.553 kb on + strand at 1388.554 kb on + strand at 1388.554 kb on + strand at 1388.562 kb on - strand at 1388.562 kb on - strand at 1388.565 kb on + strand at 1388.565 kb on + strand at 1388.565 kb on + strand at 1388.733 kb on + strand at 1388.733 kb on + strand at 1388.733 kb on + strand at 1388.733 kb on + strand at 1388.733 kb on + strand at 1388.733 kb on + strand at 1388.733 kb on + strand at 1388.738 kb on + strand at 1388.767 kb on + strand at 1388.788 kb on + strand at 1388.788 kb on + strand at 1388.856 kb on + strand at 1388.864 kb on - strand at 1388.870 kb on + strand at 1388.878 kb on - strand at 1388.878 kb on - strand at 1388.886 kb on - strand at 1389.772 kb on + strand at 1389.787 kb on + strand at 1389.849 kb on - strand at 1389.854 kb on - strand at 1389.855 kb on - strand at 1389.871 kb on + strand at 1389.879 kb on - strand at 1389.888 kb on + strand at 1389.936 kb on + strand at 1389.936 kb on + strand at 1389.944 kb on - strand at 1389.958 kb on + strand at 1389.958 kb on + strand at 1390.013 kb on + strand at 1390.043 kb on + strand, within Dsui_1332 at 1390.118 kb on + strand, within Dsui_1332 at 1390.124 kb on - strand, within Dsui_1332 at 1390.124 kb on - strand, within Dsui_1332 at 1390.125 kb on - strand, within Dsui_1332 at 1390.191 kb on - strand, within Dsui_1332 at 1390.213 kb on + strand, within Dsui_1332 at 1390.225 kb on - strand, within Dsui_1332 at 1390.233 kb on + strand, within Dsui_1332 at 1390.261 kb on - strand, within Dsui_1332 at 1390.293 kb on + strand, within Dsui_1332 at 1390.293 kb on + strand, within Dsui_1332 at 1390.301 kb on - strand, within Dsui_1332 at 1390.306 kb on - strand, within Dsui_1332 at 1390.315 kb on - strand, within Dsui_1332 at 1390.326 kb on - strand, within Dsui_1332 at 1390.358 kb on + strand, within Dsui_1332 at 1390.358 kb on + strand, within Dsui_1332 at 1390.359 kb on + strand, within Dsui_1332 at 1390.360 kb on - strand, within Dsui_1332 at 1390.366 kb on - strand, within Dsui_1332 at 1390.370 kb on + strand, within Dsui_1332 at 1390.370 kb on + strand, within Dsui_1332 at 1390.371 kb on + strand, within Dsui_1332 at 1390.377 kb on - strand, within Dsui_1332 at 1390.378 kb on - strand, within Dsui_1332 at 1390.378 kb on - strand, within Dsui_1332 at 1390.378 kb on - strand, within Dsui_1332 at 1390.399 kb on - strand, within Dsui_1332 at 1390.420 kb on - strand, within Dsui_1332 at 1390.427 kb on + strand, within Dsui_1332 at 1390.470 kb on + strand, within Dsui_1332 at 1390.478 kb on - strand, within Dsui_1332 at 1390.481 kb on + strand, within Dsui_1332 at 1390.481 kb on + strand, within Dsui_1332 at 1390.489 kb on - strand, within Dsui_1332 at 1390.491 kb on + strand, within Dsui_1332 at 1390.499 kb on - strand, within Dsui_1332 at 1390.509 kb on + strand, within Dsui_1332 at 1390.514 kb on + strand, within Dsui_1332 at 1390.515 kb on + strand, within Dsui_1332 at 1390.515 kb on + strand, within Dsui_1332 at 1390.515 kb on + strand, within Dsui_1332 at 1390.523 kb on - strand, within Dsui_1332 at 1390.523 kb on - strand, within Dsui_1332 at 1390.523 kb on - strand, within Dsui_1332 at 1390.569 kb on - strand, within Dsui_1332 at 1390.619 kb on - strand, within Dsui_1332 at 1390.646 kb on - strand at 1390.651 kb on + strand at 1390.654 kb on - strand at 1390.659 kb on - strand at 1390.659 kb on - strand at 1390.659 kb on - strand at 1390.661 kb on + strand at 1390.661 kb on + strand at 1390.661 kb on + strand at 1390.661 kb on + strand at 1390.661 kb on - strand at 1390.668 kb on + strand at 1390.669 kb on - strand at 1390.683 kb on + strand at 1390.725 kb on + strand at 1390.737 kb on + strand at 1390.745 kb on - strand at 1390.760 kb on + strand at 1390.776 kb on + strand at 1390.776 kb on + strand at 1390.776 kb on + strand at 1390.776 kb on + strand at 1390.776 kb on + strand at 1390.777 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 1,388,388 + Dsui_1329 0.86 -1.3 1,388,388 + Dsui_1329 0.86 -1.3 1,388,391 - Dsui_1329 0.86 -1.4 1,388,434 + +0.1 1,388,435 - -1.3 1,388,442 - -1.2 1,388,442 - -0.7 1,388,448 + -1.0 1,388,448 + -0.8 1,388,455 - -1.0 1,388,455 - -1.6 1,388,456 - -0.4 1,388,456 - -0.9 1,388,480 + -1.5 1,388,495 - -0.6 1,388,495 - +1.2 1,388,503 + -1.0 1,388,505 + +0.3 1,388,508 + -0.7 1,388,508 + -0.5 1,388,508 + -0.9 1,388,508 - +0.1 1,388,508 - -0.6 1,388,523 - +0.4 1,388,533 + -0.2 1,388,541 + -1.4 1,388,543 + -0.0 1,388,543 + -0.6 1,388,543 + -1.3 1,388,543 + -0.3 1,388,543 + -0.3 1,388,543 + -0.5 1,388,543 + -0.1 1,388,549 - -2.9 1,388,551 - -0.7 1,388,551 - -0.9 1,388,551 - -1.3 1,388,551 - -0.3 1,388,551 - -1.6 1,388,553 + -0.8 1,388,554 + -1.2 1,388,554 + -0.9 1,388,562 - -1.1 1,388,562 - -0.6 1,388,565 + -0.4 1,388,565 + -0.4 1,388,565 + -0.3 1,388,733 + -1.3 1,388,733 + -1.6 1,388,733 + -2.3 1,388,733 + -2.7 1,388,733 + -1.9 1,388,733 + -0.5 1,388,733 + -1.8 1,388,738 + -2.3 1,388,767 + -1.7 1,388,788 + -2.7 1,388,788 + -3.4 1,388,856 + -0.3 1,388,864 - -0.2 1,388,870 + -0.8 1,388,878 - +0.5 1,388,878 - +0.3 1,388,886 - +0.7 1,389,772 + -0.8 1,389,787 + -0.0 1,389,849 - +0.2 1,389,854 - -0.3 1,389,855 - +0.3 1,389,871 + +0.2 1,389,879 - +0.1 1,389,888 + +0.1 1,389,936 + +0.0 1,389,936 + +0.4 1,389,944 - +0.0 1,389,958 + -0.1 1,389,958 + -0.5 1,390,013 + -0.1 1,390,043 + Dsui_1332 0.11 +0.6 1,390,118 + Dsui_1332 0.21 +0.2 1,390,124 - Dsui_1332 0.21 +0.6 1,390,124 - Dsui_1332 0.21 +0.4 1,390,125 - Dsui_1332 0.22 +0.7 1,390,191 - Dsui_1332 0.30 +0.2 1,390,213 + Dsui_1332 0.33 +0.3 1,390,225 - Dsui_1332 0.35 +0.6 1,390,233 + Dsui_1332 0.36 +0.8 1,390,261 - Dsui_1332 0.39 -0.1 1,390,293 + Dsui_1332 0.44 -0.1 1,390,293 + Dsui_1332 0.44 -0.3 1,390,301 - Dsui_1332 0.45 -0.4 1,390,306 - Dsui_1332 0.45 +0.3 1,390,315 - Dsui_1332 0.46 -1.0 1,390,326 - Dsui_1332 0.48 +0.0 1,390,358 + Dsui_1332 0.52 +0.8 1,390,358 + Dsui_1332 0.52 +0.4 1,390,359 + Dsui_1332 0.52 +0.7 1,390,360 - Dsui_1332 0.52 +0.5 1,390,366 - Dsui_1332 0.53 +0.3 1,390,370 + Dsui_1332 0.54 +0.4 1,390,370 + Dsui_1332 0.54 -0.3 1,390,371 + Dsui_1332 0.54 -0.5 1,390,377 - Dsui_1332 0.55 -0.2 1,390,378 - Dsui_1332 0.55 +0.2 1,390,378 - Dsui_1332 0.55 +0.4 1,390,378 - Dsui_1332 0.55 +0.2 1,390,399 - Dsui_1332 0.57 -0.8 1,390,420 - Dsui_1332 0.60 +1.3 1,390,427 + Dsui_1332 0.61 +0.8 1,390,470 + Dsui_1332 0.67 +0.4 1,390,478 - Dsui_1332 0.68 -0.5 1,390,481 + Dsui_1332 0.68 +1.6 1,390,481 + Dsui_1332 0.68 +0.4 1,390,489 - Dsui_1332 0.69 +0.3 1,390,491 + Dsui_1332 0.70 -0.1 1,390,499 - Dsui_1332 0.71 -0.6 1,390,509 + Dsui_1332 0.72 +0.2 1,390,514 + Dsui_1332 0.73 +0.6 1,390,515 + Dsui_1332 0.73 +0.2 1,390,515 + Dsui_1332 0.73 +0.7 1,390,515 + Dsui_1332 0.73 +0.5 1,390,523 - Dsui_1332 0.74 -0.4 1,390,523 - Dsui_1332 0.74 -0.1 1,390,523 - Dsui_1332 0.74 +0.3 1,390,569 - Dsui_1332 0.80 -0.6 1,390,619 - Dsui_1332 0.86 +0.4 1,390,646 - +0.2 1,390,651 + +0.3 1,390,654 - -0.6 1,390,659 - +0.7 1,390,659 - -1.1 1,390,659 - -0.1 1,390,661 + +0.2 1,390,661 + +0.2 1,390,661 + +0.5 1,390,661 + +0.4 1,390,661 - +0.3 1,390,668 + +0.4 1,390,669 - +0.9 1,390,683 + +0.2 1,390,725 + +0.4 1,390,737 + +0.1 1,390,745 - -0.5 1,390,760 + +0.1 1,390,776 + +0.5 1,390,776 + +0.3 1,390,776 + -0.1 1,390,776 + -0.0 1,390,776 + -0.2 1,390,777 - +0.7
Or see this region's nucleotide sequence