Strain Fitness in Dechlorosoma suillum PS around Dsui_1331

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1329 and Dsui_1330 are separated by 500 nucleotidesDsui_1330 and Dsui_1331 are separated by 9 nucleotidesDsui_1331 and Dsui_1332 are separated by 182 nucleotidesDsui_1332 and Dsui_1333 are separated by 20 nucleotides Dsui_1329: Dsui_1329 - putative redox protein, regulator of disulfide bond formation, at 1,388,031 to 1,388,447 _1329 Dsui_1330: Dsui_1330 - ribosomal protein L13, bacterial type, at 1,388,948 to 1,389,376 _1330 Dsui_1331: Dsui_1331 - ribosomal protein S9, at 1,389,386 to 1,389,778 _1331 Dsui_1332: Dsui_1332 - hypothetical protein, at 1,389,961 to 1,390,722 _1332 Dsui_1333: Dsui_1333 - Integral membrane protein CcmA involved in cell shape determination, at 1,390,743 to 1,391,153 _1333 Position (kb) 1389 1390Strain fitness (log2 ratio) -3 -2 -1 0 1at 1388.388 kb on + strand, within Dsui_1329at 1388.388 kb on + strand, within Dsui_1329at 1388.391 kb on - strand, within Dsui_1329at 1388.434 kb on + strandat 1388.435 kb on - strandat 1388.442 kb on - strandat 1388.442 kb on - strandat 1388.448 kb on + strandat 1388.448 kb on + strandat 1388.455 kb on - strandat 1388.455 kb on - strandat 1388.456 kb on - strandat 1388.456 kb on - strandat 1388.480 kb on + strandat 1388.495 kb on - strandat 1388.495 kb on - strandat 1388.503 kb on + strandat 1388.505 kb on + strandat 1388.508 kb on + strandat 1388.508 kb on + strandat 1388.508 kb on + strandat 1388.508 kb on - strandat 1388.508 kb on - strandat 1388.523 kb on - strandat 1388.533 kb on + strandat 1388.541 kb on + strandat 1388.543 kb on + strandat 1388.543 kb on + strandat 1388.543 kb on + strandat 1388.543 kb on + strandat 1388.543 kb on + strandat 1388.543 kb on + strandat 1388.543 kb on + strandat 1388.549 kb on - strandat 1388.551 kb on - strandat 1388.551 kb on - strandat 1388.551 kb on - strandat 1388.551 kb on - strandat 1388.551 kb on - strandat 1388.553 kb on + strandat 1388.554 kb on + strandat 1388.554 kb on + strandat 1388.562 kb on - strandat 1388.562 kb on - strandat 1388.565 kb on + strandat 1388.565 kb on + strandat 1388.565 kb on + strandat 1388.733 kb on + strandat 1388.733 kb on + strandat 1388.733 kb on + strandat 1388.733 kb on + strandat 1388.733 kb on + strandat 1388.733 kb on + strandat 1388.733 kb on + strandat 1388.738 kb on + strandat 1388.767 kb on + strandat 1388.788 kb on + strandat 1388.788 kb on + strandat 1388.856 kb on + strandat 1388.864 kb on - strandat 1388.870 kb on + strandat 1388.878 kb on - strandat 1388.878 kb on - strandat 1388.886 kb on - strandat 1389.772 kb on + strandat 1389.787 kb on + strandat 1389.849 kb on - strandat 1389.854 kb on - strandat 1389.855 kb on - strandat 1389.871 kb on + strandat 1389.879 kb on - strandat 1389.888 kb on + strandat 1389.936 kb on + strandat 1389.936 kb on + strandat 1389.944 kb on - strandat 1389.958 kb on + strandat 1389.958 kb on + strandat 1390.013 kb on + strandat 1390.043 kb on + strand, within Dsui_1332at 1390.118 kb on + strand, within Dsui_1332at 1390.124 kb on - strand, within Dsui_1332at 1390.124 kb on - strand, within Dsui_1332at 1390.125 kb on - strand, within Dsui_1332at 1390.191 kb on - strand, within Dsui_1332at 1390.213 kb on + strand, within Dsui_1332at 1390.225 kb on - strand, within Dsui_1332at 1390.233 kb on + strand, within Dsui_1332at 1390.261 kb on - strand, within Dsui_1332at 1390.293 kb on + strand, within Dsui_1332at 1390.293 kb on + strand, within Dsui_1332at 1390.301 kb on - strand, within Dsui_1332at 1390.306 kb on - strand, within Dsui_1332at 1390.315 kb on - strand, within Dsui_1332at 1390.326 kb on - strand, within Dsui_1332at 1390.358 kb on + strand, within Dsui_1332at 1390.358 kb on + strand, within Dsui_1332at 1390.359 kb on + strand, within Dsui_1332at 1390.360 kb on - strand, within Dsui_1332at 1390.366 kb on - strand, within Dsui_1332at 1390.370 kb on + strand, within Dsui_1332at 1390.370 kb on + strand, within Dsui_1332at 1390.371 kb on + strand, within Dsui_1332at 1390.377 kb on - strand, within Dsui_1332at 1390.378 kb on - strand, within Dsui_1332at 1390.378 kb on - strand, within Dsui_1332at 1390.378 kb on - strand, within Dsui_1332at 1390.399 kb on - strand, within Dsui_1332at 1390.420 kb on - strand, within Dsui_1332at 1390.427 kb on + strand, within Dsui_1332at 1390.470 kb on + strand, within Dsui_1332at 1390.478 kb on - strand, within Dsui_1332at 1390.481 kb on + strand, within Dsui_1332at 1390.481 kb on + strand, within Dsui_1332at 1390.489 kb on - strand, within Dsui_1332at 1390.491 kb on + strand, within Dsui_1332at 1390.499 kb on - strand, within Dsui_1332at 1390.509 kb on + strand, within Dsui_1332at 1390.514 kb on + strand, within Dsui_1332at 1390.515 kb on + strand, within Dsui_1332at 1390.515 kb on + strand, within Dsui_1332at 1390.515 kb on + strand, within Dsui_1332at 1390.523 kb on - strand, within Dsui_1332at 1390.523 kb on - strand, within Dsui_1332at 1390.523 kb on - strand, within Dsui_1332at 1390.569 kb on - strand, within Dsui_1332at 1390.619 kb on - strand, within Dsui_1332at 1390.646 kb on - strandat 1390.651 kb on + strandat 1390.654 kb on - strandat 1390.659 kb on - strandat 1390.659 kb on - strandat 1390.659 kb on - strandat 1390.661 kb on + strandat 1390.661 kb on + strandat 1390.661 kb on + strandat 1390.661 kb on + strandat 1390.661 kb on - strandat 1390.668 kb on + strandat 1390.669 kb on - strandat 1390.683 kb on + strandat 1390.725 kb on + strandat 1390.737 kb on + strandat 1390.745 kb on - strandat 1390.760 kb on + strandat 1390.776 kb on + strandat 1390.776 kb on + strandat 1390.776 kb on + strandat 1390.776 kb on + strandat 1390.776 kb on + strandat 1390.777 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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1,388,388 + Dsui_1329 0.86 -1.3
1,388,388 + Dsui_1329 0.86 -1.3
1,388,391 - Dsui_1329 0.86 -1.4
1,388,434 + +0.1
1,388,435 - -1.3
1,388,442 - -1.2
1,388,442 - -0.7
1,388,448 + -1.0
1,388,448 + -0.8
1,388,455 - -1.0
1,388,455 - -1.6
1,388,456 - -0.4
1,388,456 - -0.9
1,388,480 + -1.5
1,388,495 - -0.6
1,388,495 - +1.2
1,388,503 + -1.0
1,388,505 + +0.3
1,388,508 + -0.7
1,388,508 + -0.5
1,388,508 + -0.9
1,388,508 - +0.1
1,388,508 - -0.6
1,388,523 - +0.4
1,388,533 + -0.2
1,388,541 + -1.4
1,388,543 + -0.0
1,388,543 + -0.6
1,388,543 + -1.3
1,388,543 + -0.3
1,388,543 + -0.3
1,388,543 + -0.5
1,388,543 + -0.1
1,388,549 - -2.9
1,388,551 - -0.7
1,388,551 - -0.9
1,388,551 - -1.3
1,388,551 - -0.3
1,388,551 - -1.6
1,388,553 + -0.8
1,388,554 + -1.2
1,388,554 + -0.9
1,388,562 - -1.1
1,388,562 - -0.6
1,388,565 + -0.4
1,388,565 + -0.4
1,388,565 + -0.3
1,388,733 + -1.3
1,388,733 + -1.6
1,388,733 + -2.3
1,388,733 + -2.7
1,388,733 + -1.9
1,388,733 + -0.5
1,388,733 + -1.8
1,388,738 + -2.3
1,388,767 + -1.7
1,388,788 + -2.7
1,388,788 + -3.4
1,388,856 + -0.3
1,388,864 - -0.2
1,388,870 + -0.8
1,388,878 - +0.5
1,388,878 - +0.3
1,388,886 - +0.7
1,389,772 + -0.8
1,389,787 + -0.0
1,389,849 - +0.2
1,389,854 - -0.3
1,389,855 - +0.3
1,389,871 + +0.2
1,389,879 - +0.1
1,389,888 + +0.1
1,389,936 + +0.0
1,389,936 + +0.4
1,389,944 - +0.0
1,389,958 + -0.1
1,389,958 + -0.5
1,390,013 + -0.1
1,390,043 + Dsui_1332 0.11 +0.6
1,390,118 + Dsui_1332 0.21 +0.2
1,390,124 - Dsui_1332 0.21 +0.6
1,390,124 - Dsui_1332 0.21 +0.4
1,390,125 - Dsui_1332 0.22 +0.7
1,390,191 - Dsui_1332 0.30 +0.2
1,390,213 + Dsui_1332 0.33 +0.3
1,390,225 - Dsui_1332 0.35 +0.6
1,390,233 + Dsui_1332 0.36 +0.8
1,390,261 - Dsui_1332 0.39 -0.1
1,390,293 + Dsui_1332 0.44 -0.1
1,390,293 + Dsui_1332 0.44 -0.3
1,390,301 - Dsui_1332 0.45 -0.4
1,390,306 - Dsui_1332 0.45 +0.3
1,390,315 - Dsui_1332 0.46 -1.0
1,390,326 - Dsui_1332 0.48 +0.0
1,390,358 + Dsui_1332 0.52 +0.8
1,390,358 + Dsui_1332 0.52 +0.4
1,390,359 + Dsui_1332 0.52 +0.7
1,390,360 - Dsui_1332 0.52 +0.5
1,390,366 - Dsui_1332 0.53 +0.3
1,390,370 + Dsui_1332 0.54 +0.4
1,390,370 + Dsui_1332 0.54 -0.3
1,390,371 + Dsui_1332 0.54 -0.5
1,390,377 - Dsui_1332 0.55 -0.2
1,390,378 - Dsui_1332 0.55 +0.2
1,390,378 - Dsui_1332 0.55 +0.4
1,390,378 - Dsui_1332 0.55 +0.2
1,390,399 - Dsui_1332 0.57 -0.8
1,390,420 - Dsui_1332 0.60 +1.3
1,390,427 + Dsui_1332 0.61 +0.8
1,390,470 + Dsui_1332 0.67 +0.4
1,390,478 - Dsui_1332 0.68 -0.5
1,390,481 + Dsui_1332 0.68 +1.6
1,390,481 + Dsui_1332 0.68 +0.4
1,390,489 - Dsui_1332 0.69 +0.3
1,390,491 + Dsui_1332 0.70 -0.1
1,390,499 - Dsui_1332 0.71 -0.6
1,390,509 + Dsui_1332 0.72 +0.2
1,390,514 + Dsui_1332 0.73 +0.6
1,390,515 + Dsui_1332 0.73 +0.2
1,390,515 + Dsui_1332 0.73 +0.7
1,390,515 + Dsui_1332 0.73 +0.5
1,390,523 - Dsui_1332 0.74 -0.4
1,390,523 - Dsui_1332 0.74 -0.1
1,390,523 - Dsui_1332 0.74 +0.3
1,390,569 - Dsui_1332 0.80 -0.6
1,390,619 - Dsui_1332 0.86 +0.4
1,390,646 - +0.2
1,390,651 + +0.3
1,390,654 - -0.6
1,390,659 - +0.7
1,390,659 - -1.1
1,390,659 - -0.1
1,390,661 + +0.2
1,390,661 + +0.2
1,390,661 + +0.5
1,390,661 + +0.4
1,390,661 - +0.3
1,390,668 + +0.4
1,390,669 - +0.9
1,390,683 + +0.2
1,390,725 + +0.4
1,390,737 + +0.1
1,390,745 - -0.5
1,390,760 + +0.1
1,390,776 + +0.5
1,390,776 + +0.3
1,390,776 + -0.1
1,390,776 + -0.0
1,390,776 + -0.2
1,390,777 - +0.7

Or see this region's nucleotide sequence