Strain Fitness in Dechlorosoma suillum PS around Dsui_1263

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1262 and Dsui_1263 are separated by 2 nucleotidesDsui_1263 and Dsui_1264 are separated by 320 nucleotides Dsui_1262: Dsui_1262 - TRAP transporter, DctM subunit, at 1,325,493 to 1,326,959 _1262 Dsui_1263: Dsui_1263 - TRAP-type mannitol/chloroaromatic compound transport system, small permease component, at 1,326,962 to 1,327,549 _1263 Dsui_1264: Dsui_1264 - fructose-2,6-bisphosphatase, at 1,327,870 to 1,328,520 _1264 Position (kb) 1326 1327 1328Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1326.071 kb on + strandat 1326.071 kb on - strand, within Dsui_1262at 1326.152 kb on + strand, within Dsui_1262at 1326.161 kb on - strand, within Dsui_1262at 1326.206 kb on - strand, within Dsui_1262at 1326.254 kb on + strandat 1326.262 kb on - strand, within Dsui_1262at 1326.325 kb on - strand, within Dsui_1262at 1326.368 kb on + strand, within Dsui_1262at 1326.376 kb on - strand, within Dsui_1262at 1326.378 kb on + strandat 1326.569 kb on - strand, within Dsui_1262at 1326.569 kb on - strand, within Dsui_1262at 1326.574 kb on - strand, within Dsui_1262at 1326.642 kb on + strand, within Dsui_1262at 1326.645 kb on - strand, within Dsui_1262at 1326.650 kb on - strand, within Dsui_1262at 1326.650 kb on - strand, within Dsui_1262at 1326.690 kb on - strand, within Dsui_1262at 1326.714 kb on + strandat 1326.722 kb on - strand, within Dsui_1262at 1326.722 kb on - strand, within Dsui_1262at 1326.804 kb on + strand, within Dsui_1262at 1326.807 kb on - strand, within Dsui_1262at 1326.814 kb on + strandat 1326.822 kb on - strandat 1326.822 kb on - strandat 1326.833 kb on - strandat 1326.910 kb on - strandat 1327.094 kb on - strand, within Dsui_1263at 1327.108 kb on + strand, within Dsui_1263at 1327.206 kb on + strandat 1327.206 kb on + strand, within Dsui_1263at 1327.206 kb on + strandat 1327.214 kb on - strand, within Dsui_1263at 1327.216 kb on + strand, within Dsui_1263at 1327.233 kb on + strand, within Dsui_1263at 1327.241 kb on - strand, within Dsui_1263at 1327.265 kb on - strand, within Dsui_1263at 1327.342 kb on + strand, within Dsui_1263at 1327.347 kb on - strand, within Dsui_1263at 1327.350 kb on - strand, within Dsui_1263at 1327.389 kb on - strand, within Dsui_1263at 1327.438 kb on - strand, within Dsui_1263at 1327.471 kb on + strand, within Dsui_1263at 1327.489 kb on - strand, within Dsui_1263at 1327.537 kb on + strandat 1327.552 kb on - strandat 1327.566 kb on - strandat 1327.617 kb on + strandat 1327.663 kb on + strandat 1327.671 kb on - strandat 1327.729 kb on + strandat 1327.841 kb on + strandat 1327.852 kb on + strandat 1327.860 kb on - strandat 1328.038 kb on + strand, within Dsui_1264at 1328.122 kb on + strand, within Dsui_1264at 1328.184 kb on + strand, within Dsui_1264at 1328.219 kb on + strand, within Dsui_1264at 1328.229 kb on + strandat 1328.328 kb on + strand, within Dsui_1264at 1328.339 kb on + strand, within Dsui_1264at 1328.379 kb on + strand, within Dsui_1264at 1328.533 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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1,326,071 + +1.9
1,326,071 - Dsui_1262 0.39 +1.1
1,326,152 + Dsui_1262 0.45 +0.5
1,326,161 - Dsui_1262 0.46 +1.4
1,326,206 - Dsui_1262 0.49 +2.0
1,326,254 + -0.4
1,326,262 - Dsui_1262 0.52 +0.8
1,326,325 - Dsui_1262 0.57 +0.4
1,326,368 + Dsui_1262 0.60 +1.0
1,326,376 - Dsui_1262 0.60 +0.5
1,326,378 + +1.5
1,326,569 - Dsui_1262 0.73 +0.4
1,326,569 - Dsui_1262 0.73 +0.7
1,326,574 - Dsui_1262 0.74 +1.4
1,326,642 + Dsui_1262 0.78 +1.1
1,326,645 - Dsui_1262 0.79 +0.9
1,326,650 - Dsui_1262 0.79 +1.1
1,326,650 - Dsui_1262 0.79 +1.1
1,326,690 - Dsui_1262 0.82 +0.1
1,326,714 + +1.9
1,326,722 - Dsui_1262 0.84 +0.8
1,326,722 - Dsui_1262 0.84 +1.4
1,326,804 + Dsui_1262 0.89 +1.4
1,326,807 - Dsui_1262 0.90 +1.6
1,326,814 + +2.4
1,326,822 - +1.2
1,326,822 - +1.6
1,326,833 - +1.1
1,326,910 - +0.8
1,327,094 - Dsui_1263 0.22 +0.1
1,327,108 + Dsui_1263 0.25 +0.5
1,327,206 + -0.1
1,327,206 + Dsui_1263 0.41 +1.9
1,327,206 + +2.9
1,327,214 - Dsui_1263 0.43 +1.8
1,327,216 + Dsui_1263 0.43 +1.1
1,327,233 + Dsui_1263 0.46 -0.2
1,327,241 - Dsui_1263 0.47 +0.9
1,327,265 - Dsui_1263 0.52 +1.3
1,327,342 + Dsui_1263 0.65 +1.2
1,327,347 - Dsui_1263 0.65 +2.7
1,327,350 - Dsui_1263 0.66 +1.3
1,327,389 - Dsui_1263 0.73 +2.0
1,327,438 - Dsui_1263 0.81 +1.2
1,327,471 + Dsui_1263 0.87 +2.2
1,327,489 - Dsui_1263 0.90 +1.0
1,327,537 + -1.8
1,327,552 - -0.7
1,327,566 - +0.7
1,327,617 + +0.4
1,327,663 + +0.7
1,327,671 - -0.1
1,327,729 + +1.6
1,327,841 + +0.1
1,327,852 + +1.4
1,327,860 - -0.1
1,328,038 + Dsui_1264 0.26 +0.9
1,328,122 + Dsui_1264 0.39 -0.6
1,328,184 + Dsui_1264 0.48 -0.1
1,328,219 + Dsui_1264 0.54 +0.3
1,328,229 + -0.6
1,328,328 + Dsui_1264 0.70 +0.7
1,328,339 + Dsui_1264 0.72 +1.9
1,328,379 + Dsui_1264 0.78 -0.6
1,328,533 - +1.5

Or see this region's nucleotide sequence