Strain Fitness in Dechlorosoma suillum PS around Dsui_1230

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1229 and Dsui_1230 are separated by 15 nucleotidesDsui_1230 and Dsui_1231 are separated by 0 nucleotidesDsui_1231 and Dsui_1232 are separated by 76 nucleotides Dsui_1229: Dsui_1229 - Zn-dependent oxidoreductase, NADPH:quinone reductase, at 1,286,740 to 1,287,714 _1229 Dsui_1230: Dsui_1230 - TRAP-type uncharacterized transport system, periplasmic component, at 1,287,730 to 1,289,085 _1230 Dsui_1231: Dsui_1231 - ATPase involved in chromosome partitioning, at 1,289,086 to 1,289,709 _1231 Dsui_1232: Dsui_1232 - TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component, at 1,289,786 to 1,290,874 _1232 Position (kb) 1287 1288 1289 1290Strain fitness (log2 ratio) -2 -1 0 1at 1286.790 kb on - strandat 1286.792 kb on + strandat 1286.889 kb on + strand, within Dsui_1229at 1286.949 kb on - strand, within Dsui_1229at 1287.266 kb on + strand, within Dsui_1229at 1287.269 kb on - strand, within Dsui_1229at 1287.354 kb on + strand, within Dsui_1229at 1287.417 kb on - strand, within Dsui_1229at 1287.419 kb on + strand, within Dsui_1229at 1287.466 kb on - strand, within Dsui_1229at 1287.477 kb on + strand, within Dsui_1229at 1287.546 kb on - strand, within Dsui_1229at 1287.583 kb on - strandat 1287.645 kb on - strandat 1287.692 kb on + strandat 1287.827 kb on + strandat 1287.941 kb on + strand, within Dsui_1230at 1287.955 kb on - strand, within Dsui_1230at 1287.955 kb on - strand, within Dsui_1230at 1288.029 kb on + strand, within Dsui_1230at 1288.029 kb on + strand, within Dsui_1230at 1288.037 kb on - strandat 1288.038 kb on - strand, within Dsui_1230at 1288.289 kb on + strand, within Dsui_1230at 1288.289 kb on + strand, within Dsui_1230at 1288.312 kb on + strand, within Dsui_1230at 1288.422 kb on + strand, within Dsui_1230at 1288.430 kb on - strandat 1288.430 kb on - strand, within Dsui_1230at 1288.472 kb on - strand, within Dsui_1230at 1288.516 kb on - strand, within Dsui_1230at 1288.600 kb on + strand, within Dsui_1230at 1288.608 kb on - strand, within Dsui_1230at 1288.656 kb on - strand, within Dsui_1230at 1288.684 kb on - strand, within Dsui_1230at 1288.697 kb on + strand, within Dsui_1230at 1288.705 kb on - strandat 1288.901 kb on + strand, within Dsui_1230at 1288.954 kb on + strandat 1288.986 kb on - strandat 1288.988 kb on + strandat 1288.998 kb on + strandat 1288.998 kb on + strandat 1288.998 kb on + strandat 1288.998 kb on + strandat 1288.998 kb on + strandat 1288.998 kb on + strandat 1288.998 kb on + strandat 1288.998 kb on + strandat 1289.000 kb on + strandat 1289.006 kb on - strandat 1289.006 kb on - strandat 1289.006 kb on - strandat 1289.006 kb on - strandat 1289.047 kb on - strandat 1289.129 kb on + strandat 1289.134 kb on + strandat 1289.195 kb on + strand, within Dsui_1231at 1289.277 kb on - strand, within Dsui_1231at 1289.353 kb on + strand, within Dsui_1231at 1289.361 kb on - strand, within Dsui_1231at 1289.361 kb on - strand, within Dsui_1231at 1289.366 kb on + strand, within Dsui_1231at 1289.381 kb on + strand, within Dsui_1231at 1289.384 kb on - strand, within Dsui_1231at 1289.474 kb on + strand, within Dsui_1231at 1289.477 kb on - strand, within Dsui_1231at 1289.507 kb on - strand, within Dsui_1231at 1289.632 kb on - strand, within Dsui_1231at 1289.679 kb on + strandat 1289.679 kb on + strandat 1289.874 kb on + strandat 1289.882 kb on - strandat 1289.985 kb on - strand, within Dsui_1232at 1289.993 kb on - strand, within Dsui_1232

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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1,286,790 - -0.1
1,286,792 + -0.1
1,286,889 + Dsui_1229 0.15 -0.6
1,286,949 - Dsui_1229 0.21 +0.1
1,287,266 + Dsui_1229 0.54 -0.1
1,287,269 - Dsui_1229 0.54 +0.7
1,287,354 + Dsui_1229 0.63 -0.3
1,287,417 - Dsui_1229 0.69 -0.1
1,287,419 + Dsui_1229 0.70 +0.9
1,287,466 - Dsui_1229 0.74 -0.8
1,287,477 + Dsui_1229 0.76 +0.7
1,287,546 - Dsui_1229 0.83 +0.6
1,287,583 - +0.1
1,287,645 - -0.6
1,287,692 + +0.2
1,287,827 + -1.6
1,287,941 + Dsui_1230 0.16 +0.7
1,287,955 - Dsui_1230 0.17 +0.8
1,287,955 - Dsui_1230 0.17 +1.1
1,288,029 + Dsui_1230 0.22 -0.5
1,288,029 + Dsui_1230 0.22 -0.1
1,288,037 - +0.4
1,288,038 - Dsui_1230 0.23 +0.1
1,288,289 + Dsui_1230 0.41 -0.1
1,288,289 + Dsui_1230 0.41 -1.3
1,288,312 + Dsui_1230 0.43 -0.3
1,288,422 + Dsui_1230 0.51 -0.3
1,288,430 - -0.6
1,288,430 - Dsui_1230 0.52 -1.4
1,288,472 - Dsui_1230 0.55 +0.7
1,288,516 - Dsui_1230 0.58 -0.6
1,288,600 + Dsui_1230 0.64 +0.2
1,288,608 - Dsui_1230 0.65 +0.2
1,288,656 - Dsui_1230 0.68 -1.2
1,288,684 - Dsui_1230 0.70 -0.4
1,288,697 + Dsui_1230 0.71 +0.9
1,288,705 - +0.9
1,288,901 + Dsui_1230 0.86 +0.2
1,288,954 + +0.5
1,288,986 - +0.8
1,288,988 + +0.6
1,288,998 + -0.5
1,288,998 + +0.1
1,288,998 + +0.0
1,288,998 + +0.3
1,288,998 + -0.1
1,288,998 + -0.3
1,288,998 + +0.5
1,288,998 + +0.4
1,289,000 + +0.5
1,289,006 - +0.5
1,289,006 - +0.1
1,289,006 - -0.2
1,289,006 - -0.3
1,289,047 - -0.9
1,289,129 + +0.5
1,289,134 + +0.0
1,289,195 + Dsui_1231 0.17 +0.3
1,289,277 - Dsui_1231 0.31 -0.4
1,289,353 + Dsui_1231 0.43 -0.4
1,289,361 - Dsui_1231 0.44 -0.3
1,289,361 - Dsui_1231 0.44 -1.9
1,289,366 + Dsui_1231 0.45 -0.2
1,289,381 + Dsui_1231 0.47 +0.3
1,289,384 - Dsui_1231 0.48 -0.8
1,289,474 + Dsui_1231 0.62 +0.1
1,289,477 - Dsui_1231 0.63 +0.1
1,289,507 - Dsui_1231 0.67 -0.6
1,289,632 - Dsui_1231 0.88 -0.7
1,289,679 + +0.7
1,289,679 + +0.5
1,289,874 + -0.3
1,289,882 - +0.4
1,289,985 - Dsui_1232 0.18 +0.6
1,289,993 - Dsui_1232 0.19 +0.0

Or see this region's nucleotide sequence