Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1229 and Dsui_1230 are separated by 15 nucleotides Dsui_1230 and Dsui_1231 are separated by 0 nucleotides Dsui_1231 and Dsui_1232 are separated by 76 nucleotides
Dsui_1229: Dsui_1229 - Zn-dependent oxidoreductase, NADPH:quinone reductase, at 1,286,740 to 1,287,714
_1229
Dsui_1230: Dsui_1230 - TRAP-type uncharacterized transport system, periplasmic component, at 1,287,730 to 1,289,085
_1230
Dsui_1231: Dsui_1231 - ATPase involved in chromosome partitioning, at 1,289,086 to 1,289,709
_1231
Dsui_1232: Dsui_1232 - TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component, at 1,289,786 to 1,290,874
_1232
Position (kb)
1287
1288
1289
1290 Strain fitness (log2 ratio)
-2
-1
0
1 at 1286.790 kb on - strand at 1286.792 kb on + strand at 1286.889 kb on + strand, within Dsui_1229 at 1286.949 kb on - strand, within Dsui_1229 at 1287.266 kb on + strand, within Dsui_1229 at 1287.269 kb on - strand, within Dsui_1229 at 1287.354 kb on + strand, within Dsui_1229 at 1287.417 kb on - strand, within Dsui_1229 at 1287.419 kb on + strand, within Dsui_1229 at 1287.466 kb on - strand, within Dsui_1229 at 1287.477 kb on + strand, within Dsui_1229 at 1287.546 kb on - strand, within Dsui_1229 at 1287.583 kb on - strand at 1287.645 kb on - strand at 1287.692 kb on + strand at 1287.827 kb on + strand at 1287.941 kb on + strand, within Dsui_1230 at 1287.955 kb on - strand, within Dsui_1230 at 1287.955 kb on - strand, within Dsui_1230 at 1288.029 kb on + strand, within Dsui_1230 at 1288.029 kb on + strand, within Dsui_1230 at 1288.037 kb on - strand at 1288.038 kb on - strand, within Dsui_1230 at 1288.289 kb on + strand, within Dsui_1230 at 1288.289 kb on + strand, within Dsui_1230 at 1288.312 kb on + strand, within Dsui_1230 at 1288.422 kb on + strand, within Dsui_1230 at 1288.430 kb on - strand at 1288.430 kb on - strand, within Dsui_1230 at 1288.472 kb on - strand, within Dsui_1230 at 1288.516 kb on - strand, within Dsui_1230 at 1288.600 kb on + strand, within Dsui_1230 at 1288.608 kb on - strand, within Dsui_1230 at 1288.656 kb on - strand, within Dsui_1230 at 1288.684 kb on - strand, within Dsui_1230 at 1288.697 kb on + strand, within Dsui_1230 at 1288.705 kb on - strand at 1288.901 kb on + strand, within Dsui_1230 at 1288.954 kb on + strand at 1288.986 kb on - strand at 1288.988 kb on + strand at 1288.998 kb on + strand at 1288.998 kb on + strand at 1288.998 kb on + strand at 1288.998 kb on + strand at 1288.998 kb on + strand at 1288.998 kb on + strand at 1288.998 kb on + strand at 1288.998 kb on + strand at 1289.000 kb on + strand at 1289.006 kb on - strand at 1289.006 kb on - strand at 1289.006 kb on - strand at 1289.006 kb on - strand at 1289.047 kb on - strand at 1289.129 kb on + strand at 1289.134 kb on + strand at 1289.195 kb on + strand, within Dsui_1231 at 1289.277 kb on - strand, within Dsui_1231 at 1289.353 kb on + strand, within Dsui_1231 at 1289.361 kb on - strand, within Dsui_1231 at 1289.361 kb on - strand, within Dsui_1231 at 1289.366 kb on + strand, within Dsui_1231 at 1289.381 kb on + strand, within Dsui_1231 at 1289.384 kb on - strand, within Dsui_1231 at 1289.474 kb on + strand, within Dsui_1231 at 1289.477 kb on - strand, within Dsui_1231 at 1289.507 kb on - strand, within Dsui_1231 at 1289.632 kb on - strand, within Dsui_1231 at 1289.679 kb on + strand at 1289.679 kb on + strand at 1289.874 kb on + strand at 1289.882 kb on - strand at 1289.985 kb on - strand, within Dsui_1232 at 1289.993 kb on - strand, within Dsui_1232
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 1,286,790 - -0.1 1,286,792 + -0.1 1,286,889 + Dsui_1229 0.15 -0.6 1,286,949 - Dsui_1229 0.21 +0.1 1,287,266 + Dsui_1229 0.54 -0.1 1,287,269 - Dsui_1229 0.54 +0.7 1,287,354 + Dsui_1229 0.63 -0.3 1,287,417 - Dsui_1229 0.69 -0.1 1,287,419 + Dsui_1229 0.70 +0.9 1,287,466 - Dsui_1229 0.74 -0.8 1,287,477 + Dsui_1229 0.76 +0.7 1,287,546 - Dsui_1229 0.83 +0.6 1,287,583 - +0.1 1,287,645 - -0.6 1,287,692 + +0.2 1,287,827 + -1.6 1,287,941 + Dsui_1230 0.16 +0.7 1,287,955 - Dsui_1230 0.17 +0.8 1,287,955 - Dsui_1230 0.17 +1.1 1,288,029 + Dsui_1230 0.22 -0.5 1,288,029 + Dsui_1230 0.22 -0.1 1,288,037 - +0.4 1,288,038 - Dsui_1230 0.23 +0.1 1,288,289 + Dsui_1230 0.41 -0.1 1,288,289 + Dsui_1230 0.41 -1.3 1,288,312 + Dsui_1230 0.43 -0.3 1,288,422 + Dsui_1230 0.51 -0.3 1,288,430 - -0.6 1,288,430 - Dsui_1230 0.52 -1.4 1,288,472 - Dsui_1230 0.55 +0.7 1,288,516 - Dsui_1230 0.58 -0.6 1,288,600 + Dsui_1230 0.64 +0.2 1,288,608 - Dsui_1230 0.65 +0.2 1,288,656 - Dsui_1230 0.68 -1.2 1,288,684 - Dsui_1230 0.70 -0.4 1,288,697 + Dsui_1230 0.71 +0.9 1,288,705 - +0.9 1,288,901 + Dsui_1230 0.86 +0.2 1,288,954 + +0.5 1,288,986 - +0.8 1,288,988 + +0.6 1,288,998 + -0.5 1,288,998 + +0.1 1,288,998 + +0.0 1,288,998 + +0.3 1,288,998 + -0.1 1,288,998 + -0.3 1,288,998 + +0.5 1,288,998 + +0.4 1,289,000 + +0.5 1,289,006 - +0.5 1,289,006 - +0.1 1,289,006 - -0.2 1,289,006 - -0.3 1,289,047 - -0.9 1,289,129 + +0.5 1,289,134 + +0.0 1,289,195 + Dsui_1231 0.17 +0.3 1,289,277 - Dsui_1231 0.31 -0.4 1,289,353 + Dsui_1231 0.43 -0.4 1,289,361 - Dsui_1231 0.44 -0.3 1,289,361 - Dsui_1231 0.44 -1.9 1,289,366 + Dsui_1231 0.45 -0.2 1,289,381 + Dsui_1231 0.47 +0.3 1,289,384 - Dsui_1231 0.48 -0.8 1,289,474 + Dsui_1231 0.62 +0.1 1,289,477 - Dsui_1231 0.63 +0.1 1,289,507 - Dsui_1231 0.67 -0.6 1,289,632 - Dsui_1231 0.88 -0.7 1,289,679 + +0.7 1,289,679 + +0.5 1,289,874 + -0.3 1,289,882 - +0.4 1,289,985 - Dsui_1232 0.18 +0.6 1,289,993 - Dsui_1232 0.19 +0.0
Or see this region's nucleotide sequence