Strain Fitness in Dechlorosoma suillum PS around Dsui_1229

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1228 and Dsui_1229 are separated by 94 nucleotidesDsui_1229 and Dsui_1230 are separated by 15 nucleotides Dsui_1228: Dsui_1228 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 1,285,374 to 1,286,645 _1228 Dsui_1229: Dsui_1229 - Zn-dependent oxidoreductase, NADPH:quinone reductase, at 1,286,740 to 1,287,714 _1229 Dsui_1230: Dsui_1230 - TRAP-type uncharacterized transport system, periplasmic component, at 1,287,730 to 1,289,085 _1230 Position (kb) 1286 1287 1288Strain fitness (log2 ratio) -1 0 1 2at 1286.095 kb on + strand, within Dsui_1228at 1286.246 kb on + strand, within Dsui_1228at 1286.264 kb on - strand, within Dsui_1228at 1286.269 kb on - strand, within Dsui_1228at 1286.307 kb on - strand, within Dsui_1228at 1286.376 kb on - strand, within Dsui_1228at 1286.489 kb on - strand, within Dsui_1228at 1286.524 kb on - strandat 1286.563 kb on - strandat 1286.604 kb on - strandat 1286.624 kb on - strandat 1286.662 kb on - strandat 1286.697 kb on + strandat 1286.721 kb on + strandat 1286.790 kb on - strandat 1286.792 kb on + strandat 1286.889 kb on + strand, within Dsui_1229at 1286.949 kb on - strand, within Dsui_1229at 1287.266 kb on + strand, within Dsui_1229at 1287.269 kb on - strand, within Dsui_1229at 1287.354 kb on + strand, within Dsui_1229at 1287.417 kb on - strand, within Dsui_1229at 1287.419 kb on + strand, within Dsui_1229at 1287.466 kb on - strand, within Dsui_1229at 1287.477 kb on + strand, within Dsui_1229at 1287.546 kb on - strand, within Dsui_1229at 1287.583 kb on - strandat 1287.645 kb on - strandat 1287.692 kb on + strandat 1287.827 kb on + strandat 1287.941 kb on + strand, within Dsui_1230at 1287.955 kb on - strand, within Dsui_1230at 1287.955 kb on - strand, within Dsui_1230at 1288.029 kb on + strand, within Dsui_1230at 1288.029 kb on + strand, within Dsui_1230at 1288.037 kb on - strandat 1288.038 kb on - strand, within Dsui_1230at 1288.289 kb on + strand, within Dsui_1230at 1288.289 kb on + strand, within Dsui_1230at 1288.312 kb on + strand, within Dsui_1230at 1288.422 kb on + strand, within Dsui_1230at 1288.430 kb on - strandat 1288.430 kb on - strand, within Dsui_1230at 1288.472 kb on - strand, within Dsui_1230at 1288.516 kb on - strand, within Dsui_1230at 1288.600 kb on + strand, within Dsui_1230at 1288.608 kb on - strand, within Dsui_1230at 1288.656 kb on - strand, within Dsui_1230at 1288.684 kb on - strand, within Dsui_1230at 1288.697 kb on + strand, within Dsui_1230at 1288.705 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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1,286,095 + Dsui_1228 0.57 -0.8
1,286,246 + Dsui_1228 0.69 -0.9
1,286,264 - Dsui_1228 0.70 +0.1
1,286,269 - Dsui_1228 0.70 -0.0
1,286,307 - Dsui_1228 0.73 +0.1
1,286,376 - Dsui_1228 0.79 -0.1
1,286,489 - Dsui_1228 0.88 +0.7
1,286,524 - +0.5
1,286,563 - +0.2
1,286,604 - +0.4
1,286,624 - -0.4
1,286,662 - +2.0
1,286,697 + -1.1
1,286,721 + +0.5
1,286,790 - -0.1
1,286,792 + -0.1
1,286,889 + Dsui_1229 0.15 -0.6
1,286,949 - Dsui_1229 0.21 +0.1
1,287,266 + Dsui_1229 0.54 -0.1
1,287,269 - Dsui_1229 0.54 +0.7
1,287,354 + Dsui_1229 0.63 -0.3
1,287,417 - Dsui_1229 0.69 -0.1
1,287,419 + Dsui_1229 0.70 +0.9
1,287,466 - Dsui_1229 0.74 -0.8
1,287,477 + Dsui_1229 0.76 +0.7
1,287,546 - Dsui_1229 0.83 +0.6
1,287,583 - +0.1
1,287,645 - -0.6
1,287,692 + +0.2
1,287,827 + -1.6
1,287,941 + Dsui_1230 0.16 +0.7
1,287,955 - Dsui_1230 0.17 +0.8
1,287,955 - Dsui_1230 0.17 +1.1
1,288,029 + Dsui_1230 0.22 -0.5
1,288,029 + Dsui_1230 0.22 -0.1
1,288,037 - +0.4
1,288,038 - Dsui_1230 0.23 +0.1
1,288,289 + Dsui_1230 0.41 -0.1
1,288,289 + Dsui_1230 0.41 -1.3
1,288,312 + Dsui_1230 0.43 -0.3
1,288,422 + Dsui_1230 0.51 -0.3
1,288,430 - -0.6
1,288,430 - Dsui_1230 0.52 -1.4
1,288,472 - Dsui_1230 0.55 +0.7
1,288,516 - Dsui_1230 0.58 -0.6
1,288,600 + Dsui_1230 0.64 +0.2
1,288,608 - Dsui_1230 0.65 +0.2
1,288,656 - Dsui_1230 0.68 -1.2
1,288,684 - Dsui_1230 0.70 -0.4
1,288,697 + Dsui_1230 0.71 +0.9
1,288,705 - +0.9

Or see this region's nucleotide sequence