Strain Fitness in Dechlorosoma suillum PS around Dsui_1202

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1200 and Dsui_1201 are separated by 22 nucleotidesDsui_1201 and Dsui_1202 are separated by 4 nucleotidesDsui_1202 and Dsui_1203 overlap by 23 nucleotidesDsui_1203 and Dsui_1204 are separated by 23 nucleotides Dsui_1200: Dsui_1200 - glycyl-tRNA synthetase, tetrameric type, beta subunit, at 1,252,378 to 1,254,621 _1200 Dsui_1201: Dsui_1201 - histidinol-phosphate phosphatase family protein, at 1,254,644 to 1,255,192 _1201 Dsui_1202: Dsui_1202 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 1,255,197 to 1,255,940 _1202 Dsui_1203: Dsui_1203 - putative metal-dependent hydrolase, at 1,255,918 to 1,256,694 _1203 Dsui_1204: Dsui_1204 - lactoylglutathione lyase, at 1,256,718 to 1,257,104 _1204 Position (kb) 1255 1256Strain fitness (log2 ratio) -1 0 1at 1256.077 kb on - strand, within Dsui_1203at 1256.089 kb on - strand, within Dsui_1203at 1256.121 kb on - strand, within Dsui_1203at 1256.166 kb on - strand, within Dsui_1203at 1256.171 kb on - strand, within Dsui_1203at 1256.181 kb on + strand, within Dsui_1203at 1256.384 kb on + strand, within Dsui_1203at 1256.392 kb on - strand, within Dsui_1203at 1256.430 kb on - strand, within Dsui_1203at 1256.430 kb on - strand, within Dsui_1203at 1256.646 kb on + strandat 1256.670 kb on + strandat 1256.759 kb on - strand, within Dsui_1204at 1256.769 kb on + strand, within Dsui_1204at 1256.769 kb on - strand, within Dsui_1204at 1256.892 kb on - strand, within Dsui_1204at 1256.911 kb on + strand, within Dsui_1204at 1256.929 kb on + strand, within Dsui_1204

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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1,256,077 - Dsui_1203 0.20 +0.3
1,256,089 - Dsui_1203 0.22 -0.7
1,256,121 - Dsui_1203 0.26 -1.0
1,256,166 - Dsui_1203 0.32 -1.1
1,256,171 - Dsui_1203 0.33 -0.4
1,256,181 + Dsui_1203 0.34 -0.2
1,256,384 + Dsui_1203 0.60 +0.2
1,256,392 - Dsui_1203 0.61 -1.2
1,256,430 - Dsui_1203 0.66 +1.4
1,256,430 - Dsui_1203 0.66 -0.8
1,256,646 + +1.0
1,256,670 + -0.5
1,256,759 - Dsui_1204 0.11 -1.0
1,256,769 + Dsui_1204 0.13 -1.1
1,256,769 - Dsui_1204 0.13 -0.9
1,256,892 - Dsui_1204 0.45 -0.1
1,256,911 + Dsui_1204 0.50 +0.0
1,256,929 + Dsui_1204 0.55 +0.1

Or see this region's nucleotide sequence