Strain Fitness in Dechlorosoma suillum PS around Dsui_1053

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1051 and Dsui_1052 are separated by 60 nucleotidesDsui_1052 and Dsui_1053 overlap by 4 nucleotidesDsui_1053 and Dsui_1054 are separated by 108 nucleotides Dsui_1051: Dsui_1051 - nitrogen regulation protein NR(I), at 1,084,183 to 1,085,619 _1051 Dsui_1052: Dsui_1052 - birA, biotin-(acetyl-CoA-carboxylase) ligase, at 1,085,680 to 1,086,555 _1052 Dsui_1053: Dsui_1053 - pantothenate kinase, type III, at 1,086,552 to 1,087,310 _1053 Dsui_1054: Dsui_1054 - pyridoxal-phosphate dependent TrpB-like enzyme, at 1,087,419 to 1,088,783 _1054 Position (kb) 1086 1087 1088Strain fitness (log2 ratio) -2 -1 0 1 2at 1085.575 kb on - strandat 1085.585 kb on - strandat 1085.593 kb on - strandat 1085.664 kb on + strandat 1085.671 kb on + strandat 1085.672 kb on - strandat 1085.674 kb on - strandat 1085.737 kb on - strandat 1085.748 kb on + strandat 1085.789 kb on - strandat 1086.557 kb on - strandat 1087.280 kb on - strandat 1087.388 kb on + strandat 1087.388 kb on + strandat 1087.388 kb on + strandat 1087.396 kb on - strandat 1087.429 kb on + strandat 1087.429 kb on + strandat 1087.429 kb on + strandat 1087.429 kb on + strandat 1087.463 kb on - strandat 1087.487 kb on + strandat 1087.495 kb on - strandat 1087.495 kb on - strandat 1087.547 kb on + strandat 1087.669 kb on - strand, within Dsui_1054at 1087.891 kb on - strand, within Dsui_1054at 1087.906 kb on - strand, within Dsui_1054at 1087.943 kb on - strand, within Dsui_1054at 1087.948 kb on - strandat 1088.092 kb on + strand, within Dsui_1054at 1088.110 kb on + strand, within Dsui_1054at 1088.110 kb on + strand, within Dsui_1054at 1088.121 kb on - strand, within Dsui_1054at 1088.142 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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1,085,575 - +0.8
1,085,585 - -1.1
1,085,593 - +0.5
1,085,664 + +1.9
1,085,671 + +0.0
1,085,672 - +0.5
1,085,674 - -1.6
1,085,737 - -0.6
1,085,748 + +0.3
1,085,789 - +0.9
1,086,557 - +1.9
1,087,280 - +2.4
1,087,388 + +0.5
1,087,388 + +1.2
1,087,388 + -0.5
1,087,396 - -0.5
1,087,429 + +0.4
1,087,429 + -1.9
1,087,429 + -2.5
1,087,429 + -1.0
1,087,463 - +0.4
1,087,487 + -0.2
1,087,495 - -1.2
1,087,495 - -0.6
1,087,547 + -1.2
1,087,669 - Dsui_1054 0.18 -2.1
1,087,891 - Dsui_1054 0.35 -1.3
1,087,906 - Dsui_1054 0.36 -0.4
1,087,943 - Dsui_1054 0.38 +0.6
1,087,948 - +0.9
1,088,092 + Dsui_1054 0.49 -0.9
1,088,110 + Dsui_1054 0.51 -0.7
1,088,110 + Dsui_1054 0.51 -0.6
1,088,121 - Dsui_1054 0.51 -0.4
1,088,142 - -0.1

Or see this region's nucleotide sequence