Strain Fitness in Dechlorosoma suillum PS around Dsui_1025

Experiment: Anaero. lactate (C), perchlorate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1024 and Dsui_1025 are separated by 170 nucleotidesDsui_1025 and Dsui_1026 are separated by 14 nucleotides Dsui_1024: Dsui_1024 - signal recognition particle-docking protein FtsY, at 1,056,323 to 1,057,327 _1024 Dsui_1025: Dsui_1025 - putative Zn-dependent peptidase, at 1,057,498 to 1,058,865 _1025 Dsui_1026: Dsui_1026 - putative Zn-dependent peptidase, at 1,058,880 to 1,060,172 _1026 Position (kb) 1057 1058 1059Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1057.377 kb on - strandat 1057.381 kb on - strandat 1057.595 kb on + strandat 1057.652 kb on + strand, within Dsui_1025at 1057.652 kb on + strand, within Dsui_1025at 1057.942 kb on + strand, within Dsui_1025at 1057.983 kb on + strand, within Dsui_1025at 1058.020 kb on + strand, within Dsui_1025at 1058.072 kb on + strand, within Dsui_1025at 1058.072 kb on - strand, within Dsui_1025at 1058.126 kb on + strand, within Dsui_1025at 1058.228 kb on - strandat 1058.291 kb on - strand, within Dsui_1025at 1058.317 kb on - strand, within Dsui_1025at 1058.343 kb on + strand, within Dsui_1025at 1058.379 kb on - strandat 1058.420 kb on - strandat 1058.426 kb on - strandat 1058.699 kb on + strand, within Dsui_1025at 1058.785 kb on + strandat 1058.800 kb on - strandat 1058.936 kb on + strandat 1058.959 kb on + strandat 1059.088 kb on + strand, within Dsui_1026at 1059.199 kb on + strand, within Dsui_1026at 1059.302 kb on - strandat 1059.479 kb on + strand, within Dsui_1026at 1059.533 kb on + strand, within Dsui_1026at 1059.534 kb on + strand, within Dsui_1026at 1059.693 kb on + strand, within Dsui_1026at 1059.780 kb on + strandat 1059.788 kb on - strandat 1059.810 kb on - strand, within Dsui_1026

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
remove
1,057,377 - -0.5
1,057,381 - -0.8
1,057,595 + -1.9
1,057,652 + Dsui_1025 0.11 -2.1
1,057,652 + Dsui_1025 0.11 -2.8
1,057,942 + Dsui_1025 0.32 -1.5
1,057,983 + Dsui_1025 0.35 -0.6
1,058,020 + Dsui_1025 0.38 -0.7
1,058,072 + Dsui_1025 0.42 -0.7
1,058,072 - Dsui_1025 0.42 -1.4
1,058,126 + Dsui_1025 0.46 -3.1
1,058,228 - -0.1
1,058,291 - Dsui_1025 0.58 -1.5
1,058,317 - Dsui_1025 0.60 +0.1
1,058,343 + Dsui_1025 0.62 -0.9
1,058,379 - +1.9
1,058,420 - +1.9
1,058,426 - -0.4
1,058,699 + Dsui_1025 0.88 -1.8
1,058,785 + -0.9
1,058,800 - +0.1
1,058,936 + -0.0
1,058,959 + +0.5
1,059,088 + Dsui_1026 0.16 -0.4
1,059,199 + Dsui_1026 0.25 -1.3
1,059,302 - +0.9
1,059,479 + Dsui_1026 0.46 -1.4
1,059,533 + Dsui_1026 0.51 -1.6
1,059,534 + Dsui_1026 0.51 -0.1
1,059,693 + Dsui_1026 0.63 +0.4
1,059,780 + +0.4
1,059,788 - +0.4
1,059,810 - Dsui_1026 0.72 -0.2

Or see this region's nucleotide sequence