Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0978 and Dsui_0979 are separated by 116 nucleotides Dsui_0979 and Dsui_0980 are separated by 132 nucleotides Dsui_0980 and Dsui_0981 are separated by 20 nucleotides Dsui_0981 and Dsui_0982 are separated by 63 nucleotides
Dsui_0978: Dsui_0978 - 2-hydroxychromene-2-carboxylate isomerase, at 1,004,864 to 1,005,466
_0978
Dsui_0979: Dsui_0979 - TIGR00730 family protein, at 1,005,583 to 1,006,167
_0979
Dsui_0980: Dsui_0980 - acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta), at 1,006,300 to 1,007,907
_0980
Dsui_0981: Dsui_0981 - enoyl-CoA hydratase/carnithine racemase, at 1,007,928 to 1,008,719
_0981
Dsui_0982: Dsui_0982 - acetyl/propionyl-CoA carboxylase, alpha subunit, at 1,008,783 to 1,010,786
_0982
Position (kb)
1006
1007
1008 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1005.414 kb on - strand at 1005.540 kb on + strand at 1005.670 kb on + strand, within Dsui_0979 at 1005.848 kb on + strand, within Dsui_0979 at 1005.939 kb on - strand, within Dsui_0979 at 1006.064 kb on + strand, within Dsui_0979 at 1006.068 kb on + strand, within Dsui_0979 at 1006.106 kb on - strand, within Dsui_0979 at 1006.416 kb on - strand at 1006.488 kb on + strand, within Dsui_0980 at 1006.613 kb on - strand, within Dsui_0980 at 1006.646 kb on - strand, within Dsui_0980 at 1006.653 kb on + strand, within Dsui_0980 at 1006.715 kb on + strand, within Dsui_0980 at 1006.721 kb on + strand, within Dsui_0980 at 1006.723 kb on - strand at 1006.799 kb on + strand, within Dsui_0980 at 1006.799 kb on + strand, within Dsui_0980 at 1006.822 kb on + strand, within Dsui_0980 at 1006.830 kb on - strand at 1006.900 kb on - strand, within Dsui_0980 at 1007.432 kb on + strand, within Dsui_0980 at 1007.530 kb on - strand, within Dsui_0980 at 1007.654 kb on - strand, within Dsui_0980 at 1007.751 kb on + strand at 1007.790 kb on + strand at 1008.053 kb on + strand, within Dsui_0981 at 1008.084 kb on - strand, within Dsui_0981 at 1008.613 kb on + strand, within Dsui_0981 at 1008.637 kb on - strand, within Dsui_0981
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 1,005,414 - -0.4 1,005,540 + +2.1 1,005,670 + Dsui_0979 0.15 +0.7 1,005,848 + Dsui_0979 0.45 +0.1 1,005,939 - Dsui_0979 0.61 +0.3 1,006,064 + Dsui_0979 0.82 -0.0 1,006,068 + Dsui_0979 0.83 +0.3 1,006,106 - Dsui_0979 0.89 +0.8 1,006,416 - -0.6 1,006,488 + Dsui_0980 0.12 -0.4 1,006,613 - Dsui_0980 0.19 -0.9 1,006,646 - Dsui_0980 0.22 -2.0 1,006,653 + Dsui_0980 0.22 -0.2 1,006,715 + Dsui_0980 0.26 -0.2 1,006,721 + Dsui_0980 0.26 +0.7 1,006,723 - +0.9 1,006,799 + Dsui_0980 0.31 -0.3 1,006,799 + Dsui_0980 0.31 -0.2 1,006,822 + Dsui_0980 0.32 -0.9 1,006,830 - -0.4 1,006,900 - Dsui_0980 0.37 -0.8 1,007,432 + Dsui_0980 0.70 -0.4 1,007,530 - Dsui_0980 0.76 -2.7 1,007,654 - Dsui_0980 0.84 +0.8 1,007,751 + -1.1 1,007,790 + -0.1 1,008,053 + Dsui_0981 0.16 +1.2 1,008,084 - Dsui_0981 0.20 -0.3 1,008,613 + Dsui_0981 0.86 -0.4 1,008,637 - Dsui_0981 0.90 -0.3
Or see this region's nucleotide sequence