Strain Fitness in Dechlorosoma suillum PS around Dsui_0245

Experiment: Anaero. lactate (C), perchlorate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0243 and Dsui_0244 are separated by 1 nucleotidesDsui_0244 and Dsui_0245 are separated by 1 nucleotidesDsui_0245 and Dsui_0246 overlap by 4 nucleotides Dsui_0243: Dsui_0243 - cell division protein FtsI/penicillin-binding protein 2, at 243,255 to 244,988 _0243 Dsui_0244: Dsui_0244 - cell division protein FtsL, at 244,990 to 245,259 _0244 Dsui_0245: Dsui_0245 - S-adenosyl-methyltransferase MraW, at 245,261 to 246,220 _0245 Dsui_0246: Dsui_0246 - mraZ protein, at 246,217 to 246,666 _0246 Position (kb) 245 246 247Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 245.453 kb on - strand, within Dsui_0245at 245.486 kb on - strand, within Dsui_0245at 245.552 kb on - strand, within Dsui_0245at 246.386 kb on - strand, within Dsui_0246at 246.527 kb on - strand, within Dsui_0246at 246.532 kb on - strand, within Dsui_0246at 246.538 kb on - strand, within Dsui_0246at 246.625 kb on - strandat 246.690 kb on - strandat 246.728 kb on - strandat 246.753 kb on - strandat 246.984 kb on + strandat 247.026 kb on - strandat 247.072 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
remove
245,453 - Dsui_0245 0.20 -1.0
245,486 - Dsui_0245 0.23 -0.8
245,552 - Dsui_0245 0.30 +1.0
246,386 - Dsui_0246 0.38 -1.3
246,527 - Dsui_0246 0.69 -2.1
246,532 - Dsui_0246 0.70 -0.8
246,538 - Dsui_0246 0.71 -3.6
246,625 - -0.5
246,690 - -2.4
246,728 - +0.6
246,753 - -3.8
246,984 + +0.5
247,026 - +0.8
247,072 - -1.1

Or see this region's nucleotide sequence