Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0218 and Dsui_0219 are separated by 197 nucleotides Dsui_0219 and Dsui_0220 are separated by 205 nucleotides
Dsui_0218: Dsui_0218 - Integrase, at 215,875 to 217,176
_0218
Dsui_0219: Dsui_0219 - anthranilate synthase component I, at 217,374 to 218,849
_0219
Dsui_0220: Dsui_0220 - 2-phosphoglycolate phosphatase, at 219,055 to 219,717
_0220
Position (kb) 217
218
219 Strain fitness (log2 ratio) -1
0
1 at 216.433 kb on - strand, within Dsui_0218 at 216.443 kb on - strand, within Dsui_0218 at 216.443 kb on - strand, within Dsui_0218 at 216.443 kb on - strand, within Dsui_0218 at 216.685 kb on - strand, within Dsui_0218 at 216.699 kb on + strand, within Dsui_0218 at 216.724 kb on - strand, within Dsui_0218 at 216.785 kb on + strand, within Dsui_0218 at 216.840 kb on + strand at 216.853 kb on - strand, within Dsui_0218 at 216.853 kb on - strand, within Dsui_0218 at 216.858 kb on - strand, within Dsui_0218 at 216.927 kb on + strand, within Dsui_0218 at 217.013 kb on - strand, within Dsui_0218 at 217.037 kb on - strand, within Dsui_0218 at 217.083 kb on + strand at 217.105 kb on + strand at 217.106 kb on + strand at 217.164 kb on + strand at 217.182 kb on + strand at 217.190 kb on - strand at 217.204 kb on + strand at 217.352 kb on + strand at 218.976 kb on - strand at 218.976 kb on - strand at 219.129 kb on - strand, within Dsui_0220 at 219.153 kb on - strand, within Dsui_0220 at 219.264 kb on - strand, within Dsui_0220 at 219.270 kb on - strand, within Dsui_0220 at 219.283 kb on - strand, within Dsui_0220 at 219.299 kb on - strand, within Dsui_0220 at 219.339 kb on - strand, within Dsui_0220 at 219.344 kb on - strand, within Dsui_0220 at 219.368 kb on - strand, within Dsui_0220 at 219.369 kb on - strand, within Dsui_0220 at 219.369 kb on - strand, within Dsui_0220 at 219.383 kb on - strand, within Dsui_0220 at 219.400 kb on - strand, within Dsui_0220 at 219.428 kb on - strand, within Dsui_0220 at 219.446 kb on - strand, within Dsui_0220 at 219.529 kb on - strand, within Dsui_0220 at 219.595 kb on + strand, within Dsui_0220 at 219.603 kb on - strand, within Dsui_0220 at 219.623 kb on + strand, within Dsui_0220 at 219.708 kb on + strand at 219.762 kb on - strand at 219.772 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 216,433 - Dsui_0218 0.43 +0.2 216,443 - Dsui_0218 0.44 +0.4 216,443 - Dsui_0218 0.44 +0.5 216,443 - Dsui_0218 0.44 -0.5 216,685 - Dsui_0218 0.62 +0.5 216,699 + Dsui_0218 0.63 +0.2 216,724 - Dsui_0218 0.65 +0.5 216,785 + Dsui_0218 0.70 -0.1 216,840 + -0.2 216,853 - Dsui_0218 0.75 +0.7 216,853 - Dsui_0218 0.75 +0.4 216,858 - Dsui_0218 0.75 +0.2 216,927 + Dsui_0218 0.81 +0.8 217,013 - Dsui_0218 0.87 +1.1 217,037 - Dsui_0218 0.89 +0.0 217,083 + +0.6 217,105 + -0.8 217,106 + +0.0 217,164 + +1.3 217,182 + +1.7 217,190 - -0.4 217,204 + +0.4 217,352 + +0.1 218,976 - -0.0 218,976 - +0.4 219,129 - Dsui_0220 0.11 -0.6 219,153 - Dsui_0220 0.15 +0.1 219,264 - Dsui_0220 0.32 +1.4 219,270 - Dsui_0220 0.32 +0.1 219,283 - Dsui_0220 0.34 +0.4 219,299 - Dsui_0220 0.37 -1.1 219,339 - Dsui_0220 0.43 +1.5 219,344 - Dsui_0220 0.44 +0.6 219,368 - Dsui_0220 0.47 +1.0 219,369 - Dsui_0220 0.47 +0.5 219,369 - Dsui_0220 0.47 +0.7 219,383 - Dsui_0220 0.49 +0.8 219,400 - Dsui_0220 0.52 +0.6 219,428 - Dsui_0220 0.56 +0.2 219,446 - Dsui_0220 0.59 +0.4 219,529 - Dsui_0220 0.71 +0.1 219,595 + Dsui_0220 0.81 +0.5 219,603 - Dsui_0220 0.83 +0.1 219,623 + Dsui_0220 0.86 +0.4 219,708 + +1.3 219,762 - -0.3 219,772 + +0.1
Or see this region's nucleotide sequence