Strain Fitness in Dechlorosoma suillum PS around Dsui_0087

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0085 and Dsui_0086 are separated by 14 nucleotidesDsui_0086 and Dsui_0087 overlap by 4 nucleotidesDsui_0087 and Dsui_0088 are separated by 178 nucleotidesDsui_0088 and Dsui_0089 are separated by 55 nucleotides Dsui_0085: Dsui_0085 - GDP-mannose 4,6-dehydratase, at 83,344 to 84,435 _0085 Dsui_0086: Dsui_0086 - nucleoside-diphosphate-sugar epimerase, at 84,450 to 85,421 _0086 Dsui_0087: Dsui_0087 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase, at 85,418 to 86,854 _0087 Dsui_0088: Dsui_0088 - tRNA-Ala, at 87,033 to 87,108 _0088 Dsui_0089: Dsui_0089 - methyl-accepting chemotaxis protein, at 87,164 to 88,798 _0089 Position (kb) 85 86 87Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 84.425 kb on + strandat 84.439 kb on + strandat 84.439 kb on + strandat 84.447 kb on - strandat 84.447 kb on - strandat 84.483 kb on + strandat 84.483 kb on + strandat 84.491 kb on - strandat 84.491 kb on - strandat 84.491 kb on - strandat 84.501 kb on + strandat 84.545 kb on + strandat 84.545 kb on + strandat 84.581 kb on - strand, within Dsui_0086at 84.690 kb on + strand, within Dsui_0086at 84.765 kb on - strand, within Dsui_0086at 84.773 kb on + strand, within Dsui_0086at 84.804 kb on + strand, within Dsui_0086at 84.804 kb on + strand, within Dsui_0086at 84.843 kb on - strand, within Dsui_0086at 84.858 kb on + strand, within Dsui_0086at 84.858 kb on + strand, within Dsui_0086at 84.907 kb on + strand, within Dsui_0086at 84.959 kb on - strand, within Dsui_0086at 84.977 kb on + strand, within Dsui_0086at 84.985 kb on - strand, within Dsui_0086at 84.985 kb on - strand, within Dsui_0086at 85.022 kb on + strand, within Dsui_0086at 85.022 kb on + strand, within Dsui_0086at 85.030 kb on - strand, within Dsui_0086at 85.030 kb on - strand, within Dsui_0086at 85.030 kb on - strand, within Dsui_0086at 85.030 kb on - strand, within Dsui_0086at 85.030 kb on - strand, within Dsui_0086at 85.030 kb on - strand, within Dsui_0086at 85.040 kb on + strandat 85.048 kb on - strand, within Dsui_0086at 85.073 kb on + strand, within Dsui_0086at 85.073 kb on + strand, within Dsui_0086at 85.164 kb on - strand, within Dsui_0086at 85.187 kb on + strand, within Dsui_0086at 85.218 kb on - strand, within Dsui_0086at 85.231 kb on + strand, within Dsui_0086at 85.326 kb on - strandat 85.422 kb on - strandat 85.442 kb on - strandat 85.488 kb on - strandat 85.538 kb on + strandat 85.566 kb on - strand, within Dsui_0087at 85.566 kb on - strand, within Dsui_0087at 85.631 kb on - strand, within Dsui_0087at 85.734 kb on - strand, within Dsui_0087at 85.743 kb on - strand, within Dsui_0087at 85.788 kb on + strand, within Dsui_0087at 85.796 kb on - strand, within Dsui_0087at 85.826 kb on - strand, within Dsui_0087at 85.826 kb on - strand, within Dsui_0087at 85.833 kb on + strand, within Dsui_0087at 85.833 kb on + strand, within Dsui_0087at 85.836 kb on - strand, within Dsui_0087at 85.841 kb on - strand, within Dsui_0087at 85.861 kb on + strand, within Dsui_0087at 85.903 kb on - strand, within Dsui_0087at 86.184 kb on + strand, within Dsui_0087at 86.218 kb on + strand, within Dsui_0087at 86.284 kb on + strand, within Dsui_0087at 86.292 kb on - strand, within Dsui_0087at 86.394 kb on - strand, within Dsui_0087at 86.433 kb on - strand, within Dsui_0087at 86.455 kb on - strand, within Dsui_0087at 86.544 kb on - strand, within Dsui_0087at 86.554 kb on - strand, within Dsui_0087at 86.564 kb on - strand, within Dsui_0087at 86.584 kb on + strand, within Dsui_0087at 86.698 kb on + strandat 86.698 kb on + strand, within Dsui_0087at 86.801 kb on - strandat 86.825 kb on - strandat 86.833 kb on + strandat 86.879 kb on + strandat 86.919 kb on + strandat 86.929 kb on + strandat 86.929 kb on + strandat 86.937 kb on - strandat 86.973 kb on + strandat 87.016 kb on + strandat 87.017 kb on - strandat 87.021 kb on + strandat 87.040 kb on - strandat 87.040 kb on - strandat 87.056 kb on + strand, within Dsui_0088at 87.064 kb on - strand, within Dsui_0088at 87.087 kb on + strand, within Dsui_0088at 87.094 kb on - strand, within Dsui_0088at 87.136 kb on + strandat 87.136 kb on + strandat 87.136 kb on + strandat 87.136 kb on + strandat 87.136 kb on + strandat 87.136 kb on + strandat 87.144 kb on - strandat 87.144 kb on - strandat 87.180 kb on - strandat 87.237 kb on + strandat 87.250 kb on - strandat 87.278 kb on - strandat 87.284 kb on - strandat 87.323 kb on - strandat 87.330 kb on + strand, within Dsui_0089at 87.340 kb on + strand, within Dsui_0089at 87.343 kb on - strand, within Dsui_0089at 87.402 kb on + strand, within Dsui_0089at 87.490 kb on + strand, within Dsui_0089at 87.549 kb on - strand, within Dsui_0089at 87.564 kb on - strand, within Dsui_0089at 87.587 kb on - strand, within Dsui_0089at 87.768 kb on + strand, within Dsui_0089at 87.783 kb on + strand, within Dsui_0089at 87.818 kb on + strand, within Dsui_0089

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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84,425 + -2.4
84,439 + -1.5
84,439 + -0.7
84,447 - -0.6
84,447 - +0.1
84,483 + -3.2
84,483 + +0.6
84,491 - -2.5
84,491 - -2.5
84,491 - -2.4
84,501 + -1.6
84,545 + -2.2
84,545 + -0.6
84,581 - Dsui_0086 0.13 -3.6
84,690 + Dsui_0086 0.25 -2.1
84,765 - Dsui_0086 0.32 -1.9
84,773 + Dsui_0086 0.33 -2.4
84,804 + Dsui_0086 0.36 -1.5
84,804 + Dsui_0086 0.36 -1.9
84,843 - Dsui_0086 0.40 -2.7
84,858 + Dsui_0086 0.42 -1.3
84,858 + Dsui_0086 0.42 -2.5
84,907 + Dsui_0086 0.47 -1.3
84,959 - Dsui_0086 0.52 -2.5
84,977 + Dsui_0086 0.54 -2.4
84,985 - Dsui_0086 0.55 -2.3
84,985 - Dsui_0086 0.55 -2.0
85,022 + Dsui_0086 0.59 -3.3
85,022 + Dsui_0086 0.59 -1.9
85,030 - Dsui_0086 0.60 -0.7
85,030 - Dsui_0086 0.60 -2.1
85,030 - Dsui_0086 0.60 -0.2
85,030 - Dsui_0086 0.60 -2.5
85,030 - Dsui_0086 0.60 -3.2
85,030 - Dsui_0086 0.60 -1.9
85,040 + +0.4
85,048 - Dsui_0086 0.62 -3.1
85,073 + Dsui_0086 0.64 -3.1
85,073 + Dsui_0086 0.64 -2.7
85,164 - Dsui_0086 0.73 -3.0
85,187 + Dsui_0086 0.76 -0.9
85,218 - Dsui_0086 0.79 -3.9
85,231 + Dsui_0086 0.80 -3.2
85,326 - -3.2
85,422 - -0.2
85,442 - +0.2
85,488 - -1.3
85,538 + -0.6
85,566 - Dsui_0087 0.10 -2.5
85,566 - Dsui_0087 0.10 -2.6
85,631 - Dsui_0087 0.15 -2.9
85,734 - Dsui_0087 0.22 -2.6
85,743 - Dsui_0087 0.23 -1.5
85,788 + Dsui_0087 0.26 -1.0
85,796 - Dsui_0087 0.26 -2.1
85,826 - Dsui_0087 0.28 -3.3
85,826 - Dsui_0087 0.28 -3.3
85,833 + Dsui_0087 0.29 -3.0
85,833 + Dsui_0087 0.29 -2.5
85,836 - Dsui_0087 0.29 -2.0
85,841 - Dsui_0087 0.29 -2.7
85,861 + Dsui_0087 0.31 -0.3
85,903 - Dsui_0087 0.34 -2.2
86,184 + Dsui_0087 0.53 -1.5
86,218 + Dsui_0087 0.56 -3.2
86,284 + Dsui_0087 0.60 -2.2
86,292 - Dsui_0087 0.61 -4.0
86,394 - Dsui_0087 0.68 -2.5
86,433 - Dsui_0087 0.71 -2.8
86,455 - Dsui_0087 0.72 -3.0
86,544 - Dsui_0087 0.78 -2.1
86,554 - Dsui_0087 0.79 -1.4
86,564 - Dsui_0087 0.80 -1.8
86,584 + Dsui_0087 0.81 -1.8
86,698 + -1.2
86,698 + Dsui_0087 0.89 -0.8
86,801 - -3.0
86,825 - -2.3
86,833 + -1.5
86,879 + +0.2
86,919 + +0.7
86,929 + +0.8
86,929 + -0.4
86,937 - +0.2
86,973 + -0.4
87,016 + -0.3
87,017 - -0.0
87,021 + -1.2
87,040 - +0.2
87,040 - +0.1
87,056 + Dsui_0088 0.30 +0.2
87,064 - Dsui_0088 0.41 +0.3
87,087 + Dsui_0088 0.71 -0.6
87,094 - Dsui_0088 0.80 +0.3
87,136 + -0.7
87,136 + +0.1
87,136 + -1.3
87,136 + -0.7
87,136 + +0.7
87,136 + +0.3
87,144 - -1.4
87,144 - +0.1
87,180 - +0.1
87,237 + -0.6
87,250 - -0.4
87,278 - +0.4
87,284 - +0.1
87,323 - +0.9
87,330 + Dsui_0089 0.10 +0.4
87,340 + Dsui_0089 0.11 -0.9
87,343 - Dsui_0089 0.11 +0.7
87,402 + Dsui_0089 0.15 -1.2
87,490 + Dsui_0089 0.20 -0.1
87,549 - Dsui_0089 0.24 +0.1
87,564 - Dsui_0089 0.24 -0.8
87,587 - Dsui_0089 0.26 -0.7
87,768 + Dsui_0089 0.37 -0.0
87,783 + Dsui_0089 0.38 +0.4
87,818 + Dsui_0089 0.40 -0.5

Or see this region's nucleotide sequence