Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0085 and Dsui_0086 are separated by 14 nucleotides Dsui_0086 and Dsui_0087 overlap by 4 nucleotides Dsui_0087 and Dsui_0088 are separated by 178 nucleotides Dsui_0088 and Dsui_0089 are separated by 55 nucleotides
Dsui_0085: Dsui_0085 - GDP-mannose 4,6-dehydratase, at 83,344 to 84,435
_0085
Dsui_0086: Dsui_0086 - nucleoside-diphosphate-sugar epimerase, at 84,450 to 85,421
_0086
Dsui_0087: Dsui_0087 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase, at 85,418 to 86,854
_0087
Dsui_0088: Dsui_0088 - tRNA-Ala, at 87,033 to 87,108
_0088
Dsui_0089: Dsui_0089 - methyl-accepting chemotaxis protein, at 87,164 to 88,798
_0089
Position (kb)
85
86
87 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 84.425 kb on + strand at 84.439 kb on + strand at 84.439 kb on + strand at 84.447 kb on - strand at 84.447 kb on - strand at 84.483 kb on + strand at 84.483 kb on + strand at 84.491 kb on - strand at 84.491 kb on - strand at 84.491 kb on - strand at 84.501 kb on + strand at 84.545 kb on + strand at 84.545 kb on + strand at 84.581 kb on - strand, within Dsui_0086 at 84.690 kb on + strand, within Dsui_0086 at 84.765 kb on - strand, within Dsui_0086 at 84.773 kb on + strand, within Dsui_0086 at 84.804 kb on + strand, within Dsui_0086 at 84.804 kb on + strand, within Dsui_0086 at 84.843 kb on - strand, within Dsui_0086 at 84.858 kb on + strand, within Dsui_0086 at 84.858 kb on + strand, within Dsui_0086 at 84.907 kb on + strand, within Dsui_0086 at 84.959 kb on - strand, within Dsui_0086 at 84.977 kb on + strand, within Dsui_0086 at 84.985 kb on - strand, within Dsui_0086 at 84.985 kb on - strand, within Dsui_0086 at 85.022 kb on + strand, within Dsui_0086 at 85.022 kb on + strand, within Dsui_0086 at 85.030 kb on - strand, within Dsui_0086 at 85.030 kb on - strand, within Dsui_0086 at 85.030 kb on - strand, within Dsui_0086 at 85.030 kb on - strand, within Dsui_0086 at 85.030 kb on - strand, within Dsui_0086 at 85.030 kb on - strand, within Dsui_0086 at 85.040 kb on + strand at 85.048 kb on - strand, within Dsui_0086 at 85.073 kb on + strand, within Dsui_0086 at 85.073 kb on + strand, within Dsui_0086 at 85.164 kb on - strand, within Dsui_0086 at 85.187 kb on + strand, within Dsui_0086 at 85.218 kb on - strand, within Dsui_0086 at 85.231 kb on + strand, within Dsui_0086 at 85.326 kb on - strand at 85.422 kb on - strand at 85.442 kb on - strand at 85.488 kb on - strand at 85.538 kb on + strand at 85.566 kb on - strand, within Dsui_0087 at 85.566 kb on - strand, within Dsui_0087 at 85.631 kb on - strand, within Dsui_0087 at 85.734 kb on - strand, within Dsui_0087 at 85.743 kb on - strand, within Dsui_0087 at 85.788 kb on + strand, within Dsui_0087 at 85.796 kb on - strand, within Dsui_0087 at 85.826 kb on - strand, within Dsui_0087 at 85.826 kb on - strand, within Dsui_0087 at 85.833 kb on + strand, within Dsui_0087 at 85.833 kb on + strand, within Dsui_0087 at 85.836 kb on - strand, within Dsui_0087 at 85.841 kb on - strand, within Dsui_0087 at 85.861 kb on + strand, within Dsui_0087 at 85.903 kb on - strand, within Dsui_0087 at 86.184 kb on + strand, within Dsui_0087 at 86.218 kb on + strand, within Dsui_0087 at 86.284 kb on + strand, within Dsui_0087 at 86.292 kb on - strand, within Dsui_0087 at 86.394 kb on - strand, within Dsui_0087 at 86.433 kb on - strand, within Dsui_0087 at 86.455 kb on - strand, within Dsui_0087 at 86.544 kb on - strand, within Dsui_0087 at 86.554 kb on - strand, within Dsui_0087 at 86.564 kb on - strand, within Dsui_0087 at 86.584 kb on + strand, within Dsui_0087 at 86.698 kb on + strand at 86.698 kb on + strand, within Dsui_0087 at 86.801 kb on - strand at 86.825 kb on - strand at 86.833 kb on + strand at 86.879 kb on + strand at 86.919 kb on + strand at 86.929 kb on + strand at 86.929 kb on + strand at 86.937 kb on - strand at 86.973 kb on + strand at 87.016 kb on + strand at 87.017 kb on - strand at 87.021 kb on + strand at 87.040 kb on - strand at 87.040 kb on - strand at 87.056 kb on + strand, within Dsui_0088 at 87.064 kb on - strand, within Dsui_0088 at 87.087 kb on + strand, within Dsui_0088 at 87.094 kb on - strand, within Dsui_0088 at 87.136 kb on + strand at 87.136 kb on + strand at 87.136 kb on + strand at 87.136 kb on + strand at 87.136 kb on + strand at 87.136 kb on + strand at 87.144 kb on - strand at 87.144 kb on - strand at 87.180 kb on - strand at 87.237 kb on + strand at 87.250 kb on - strand at 87.278 kb on - strand at 87.284 kb on - strand at 87.323 kb on - strand at 87.330 kb on + strand, within Dsui_0089 at 87.340 kb on + strand, within Dsui_0089 at 87.343 kb on - strand, within Dsui_0089 at 87.402 kb on + strand, within Dsui_0089 at 87.490 kb on + strand, within Dsui_0089 at 87.549 kb on - strand, within Dsui_0089 at 87.564 kb on - strand, within Dsui_0089 at 87.587 kb on - strand, within Dsui_0089 at 87.768 kb on + strand, within Dsui_0089 at 87.783 kb on + strand, within Dsui_0089 at 87.818 kb on + strand, within Dsui_0089
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 84,425 + -2.4 84,439 + -1.5 84,439 + -0.7 84,447 - -0.6 84,447 - +0.1 84,483 + -3.2 84,483 + +0.6 84,491 - -2.5 84,491 - -2.5 84,491 - -2.4 84,501 + -1.6 84,545 + -2.2 84,545 + -0.6 84,581 - Dsui_0086 0.13 -3.6 84,690 + Dsui_0086 0.25 -2.1 84,765 - Dsui_0086 0.32 -1.9 84,773 + Dsui_0086 0.33 -2.4 84,804 + Dsui_0086 0.36 -1.5 84,804 + Dsui_0086 0.36 -1.9 84,843 - Dsui_0086 0.40 -2.7 84,858 + Dsui_0086 0.42 -1.3 84,858 + Dsui_0086 0.42 -2.5 84,907 + Dsui_0086 0.47 -1.3 84,959 - Dsui_0086 0.52 -2.5 84,977 + Dsui_0086 0.54 -2.4 84,985 - Dsui_0086 0.55 -2.3 84,985 - Dsui_0086 0.55 -2.0 85,022 + Dsui_0086 0.59 -3.3 85,022 + Dsui_0086 0.59 -1.9 85,030 - Dsui_0086 0.60 -0.7 85,030 - Dsui_0086 0.60 -2.1 85,030 - Dsui_0086 0.60 -0.2 85,030 - Dsui_0086 0.60 -2.5 85,030 - Dsui_0086 0.60 -3.2 85,030 - Dsui_0086 0.60 -1.9 85,040 + +0.4 85,048 - Dsui_0086 0.62 -3.1 85,073 + Dsui_0086 0.64 -3.1 85,073 + Dsui_0086 0.64 -2.7 85,164 - Dsui_0086 0.73 -3.0 85,187 + Dsui_0086 0.76 -0.9 85,218 - Dsui_0086 0.79 -3.9 85,231 + Dsui_0086 0.80 -3.2 85,326 - -3.2 85,422 - -0.2 85,442 - +0.2 85,488 - -1.3 85,538 + -0.6 85,566 - Dsui_0087 0.10 -2.5 85,566 - Dsui_0087 0.10 -2.6 85,631 - Dsui_0087 0.15 -2.9 85,734 - Dsui_0087 0.22 -2.6 85,743 - Dsui_0087 0.23 -1.5 85,788 + Dsui_0087 0.26 -1.0 85,796 - Dsui_0087 0.26 -2.1 85,826 - Dsui_0087 0.28 -3.3 85,826 - Dsui_0087 0.28 -3.3 85,833 + Dsui_0087 0.29 -3.0 85,833 + Dsui_0087 0.29 -2.5 85,836 - Dsui_0087 0.29 -2.0 85,841 - Dsui_0087 0.29 -2.7 85,861 + Dsui_0087 0.31 -0.3 85,903 - Dsui_0087 0.34 -2.2 86,184 + Dsui_0087 0.53 -1.5 86,218 + Dsui_0087 0.56 -3.2 86,284 + Dsui_0087 0.60 -2.2 86,292 - Dsui_0087 0.61 -4.0 86,394 - Dsui_0087 0.68 -2.5 86,433 - Dsui_0087 0.71 -2.8 86,455 - Dsui_0087 0.72 -3.0 86,544 - Dsui_0087 0.78 -2.1 86,554 - Dsui_0087 0.79 -1.4 86,564 - Dsui_0087 0.80 -1.8 86,584 + Dsui_0087 0.81 -1.8 86,698 + -1.2 86,698 + Dsui_0087 0.89 -0.8 86,801 - -3.0 86,825 - -2.3 86,833 + -1.5 86,879 + +0.2 86,919 + +0.7 86,929 + +0.8 86,929 + -0.4 86,937 - +0.2 86,973 + -0.4 87,016 + -0.3 87,017 - -0.0 87,021 + -1.2 87,040 - +0.2 87,040 - +0.1 87,056 + Dsui_0088 0.30 +0.2 87,064 - Dsui_0088 0.41 +0.3 87,087 + Dsui_0088 0.71 -0.6 87,094 - Dsui_0088 0.80 +0.3 87,136 + -0.7 87,136 + +0.1 87,136 + -1.3 87,136 + -0.7 87,136 + +0.7 87,136 + +0.3 87,144 - -1.4 87,144 - +0.1 87,180 - +0.1 87,237 + -0.6 87,250 - -0.4 87,278 - +0.4 87,284 - +0.1 87,323 - +0.9 87,330 + Dsui_0089 0.10 +0.4 87,340 + Dsui_0089 0.11 -0.9 87,343 - Dsui_0089 0.11 +0.7 87,402 + Dsui_0089 0.15 -1.2 87,490 + Dsui_0089 0.20 -0.1 87,549 - Dsui_0089 0.24 +0.1 87,564 - Dsui_0089 0.24 -0.8 87,587 - Dsui_0089 0.26 -0.7 87,768 + Dsui_0089 0.37 -0.0 87,783 + Dsui_0089 0.38 +0.4 87,818 + Dsui_0089 0.40 -0.5
Or see this region's nucleotide sequence