Strain Fitness in Shewanella amazonensis SB2B around Sama_2603

Experiment: L-Serine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Serine
3,113,981	+		Sama_2601	0.69	-1.0
3,113,981	+		Sama_2601	0.69	-0.7
3,113,981	+		Sama_2601	0.69	-0.5
3,113,981	+		Sama_2601	0.69	-1.1
3,113,981	+		Sama_2601	0.69	+1.2
3,113,982	-		Sama_2601	0.70	-1.5
3,113,982	-		Sama_2601	0.70	+1.2
3,113,982	-		Sama_2601	0.70	-0.9
3,114,003	-		Sama_2601	0.74	+2.8
3,114,132	+				+0.8
3,114,132	+				-0.8
3,114,133	-				-1.0
3,114,133	-				-0.2
3,114,162	-				-0.2
3,114,162	-				+0.6
3,114,181	-				+1.2
3,114,181	-				-0.4
3,114,181	-				+0.5
3,114,181	-				-0.5
3,114,766	+				+0.3
3,114,779	+				-0.1
3,114,779	+				+1.1
3,114,790	+				-0.5
3,114,790	+				-0.5
3,114,790	+				+1.8
3,114,847	+				+1.4
3,114,848	-				+1.3
3,114,848	-				-0.6
3,114,848	-				-0.5
3,114,848	-				+0.2
3,114,848	-				+5.5
3,114,848	-				-2.0
3,114,931	-				-2.4
3,115,006	-				-1.4
3,115,034	-				-0.0
3,115,034	-				+0.0
3,115,034	-				-1.3
3,115,146	+				-1.2
3,115,146	+				-0.8
3,115,146	+				-1.0
3,115,147	-				+0.0
3,115,147	-				-0.2
3,115,147	-				-0.8
3,115,147	-				+0.2
3,115,230	+		Sama_2603	0.13	-0.5
3,115,231	-		Sama_2603	0.13	-2.8
3,115,268	-		Sama_2603	0.15	-0.8
3,115,296	-		Sama_2603	0.16	+0.1
3,115,335	-		Sama_2603	0.17	-1.8
3,115,457	-		Sama_2603	0.22	-0.9
3,115,510	+		Sama_2603	0.24	-1.2
3,115,568	+		Sama_2603	0.26	-0.2
3,115,568	+		Sama_2603	0.26	-1.2
3,115,569	-		Sama_2603	0.26	-0.7
3,115,569	-		Sama_2603	0.26	+0.2
3,115,569	-		Sama_2603	0.26	-2.9
3,115,569	-		Sama_2603	0.26	-0.3
3,115,622	+		Sama_2603	0.28	-2.0
3,115,622	+		Sama_2603	0.28	-0.2
3,115,623	-		Sama_2603	0.28	+0.2
3,115,623	-		Sama_2603	0.28	-0.1
3,115,960	+		Sama_2603	0.41	-1.0
3,115,960	+		Sama_2603	0.41	+0.2
3,115,961	-		Sama_2603	0.41	-0.5
3,116,018	+		Sama_2603	0.44	-1.4
3,116,042	+		Sama_2603	0.45	-1.0
3,116,042	+		Sama_2603	0.45	-2.6
3,116,042	+		Sama_2603	0.45	-2.0
3,116,042	+		Sama_2603	0.45	+0.6
3,116,043	-		Sama_2603	0.45	+1.4
3,116,045	+		Sama_2603	0.45	+1.1
3,116,045	+		Sama_2603	0.45	-1.2
3,116,046	-		Sama_2603	0.45	-1.5
3,116,046	-		Sama_2603	0.45	-0.3
3,116,115	+		Sama_2603	0.47	-2.0
3,116,115	+		Sama_2603	0.47	-0.3
3,116,115	+		Sama_2603	0.47	-0.5
3,116,116	-		Sama_2603	0.47	-0.8
3,116,210	+		Sama_2603	0.51	-0.9
3,116,329	+		Sama_2603	0.56	-0.5
3,116,329	+		Sama_2603	0.56	-0.9
3,116,329	+		Sama_2603	0.56	-1.4
3,116,329	+		Sama_2603	0.56	-0.0
3,116,330	-		Sama_2603	0.56	+0.5
3,116,330	-		Sama_2603	0.56	+1.2
3,116,424	-		Sama_2603	0.59	+0.0
3,116,503	+		Sama_2603	0.63	+0.2
3,116,503	+		Sama_2603	0.63	-1.7
3,116,503	+		Sama_2603	0.63	-0.2
3,116,504	-		Sama_2603	0.63	+1.2
3,116,504	-		Sama_2603	0.63	+1.8
3,116,513	-		Sama_2603	0.63	+2.2
3,116,525	+		Sama_2603	0.63	-0.5
3,116,526	-		Sama_2603	0.63	-1.6
3,116,576	+		Sama_2603	0.65	-1.9
3,116,577	-		Sama_2603	0.65	+0.6
3,116,577	-		Sama_2603	0.65	-1.8
3,116,577	-		Sama_2603	0.65	+0.2
3,116,579	+		Sama_2603	0.65	-2.0
3,116,580	-		Sama_2603	0.66	-0.8
3,116,580	-		Sama_2603	0.66	-0.8
3,116,580	-		Sama_2603	0.66	-0.9
3,116,580	-		Sama_2603	0.66	-1.5
3,116,580	-		Sama_2603	0.66	-0.6
3,116,580	-		Sama_2603	0.66	+0.2
3,116,639	+		Sama_2603	0.68	-1.5
3,116,745	-		Sama_2603	0.72	-0.6
3,116,853	+		Sama_2603	0.76	-0.2
3,116,853	+		Sama_2603	0.76	-0.4
3,116,853	+		Sama_2603	0.76	-2.1
3,116,853	+		Sama_2603	0.76	-0.1
3,116,854	-		Sama_2603	0.76	-1.9
3,116,854	-		Sama_2603	0.76	-0.2
3,116,889	+		Sama_2603	0.78	-1.2
3,116,890	-		Sama_2603	0.78	-0.5
3,116,890	-		Sama_2603	0.78	-0.4
3,116,977	+		Sama_2603	0.81	-0.8
3,117,000	-		Sama_2603	0.82	-0.2
3,117,113	+		Sama_2603	0.86	-1.4
3,117,114	-		Sama_2603	0.86	-0.2
3,117,114	-		Sama_2603	0.86	-0.3
3,117,154	+		Sama_2603	0.88	+0.1
3,117,154	+		Sama_2603	0.88	+0.2
3,117,154	+		Sama_2603	0.88	+0.2
3,117,155	-		Sama_2603	0.88	-2.6
3,117,155	-		Sama_2603	0.88	-0.1
3,117,155	-		Sama_2603	0.88	+0.5
3,117,155	-		Sama_2603	0.88	-0.6
3,117,155	-		Sama_2603	0.88	-2.1
3,117,155	-		Sama_2603	0.88	-0.5
3,117,155	-		Sama_2603	0.88	-0.2
3,117,165	-		Sama_2603	0.88	-2.4
3,117,206	+		Sama_2603	0.90	+1.1
3,117,279	+				+0.8
3,117,279	+				-0.5
3,117,280	-				-1.3
3,117,280	-				-0.1
3,117,294	-				+0.0
3,117,294	-				-0.5
3,117,319	-				-2.0
3,117,321	+				+1.8
3,117,321	+				+0.2
3,117,321	+				-0.3
3,117,321	+				+0.2
3,117,321	+				-2.7
3,117,322	-				-3.4
3,117,322	-				+1.6
3,117,322	-				-0.6
3,117,384	-				-0.3
3,117,452	+				-0.2
3,117,453	-				-0.6
3,117,467	+				+2.1
3,117,468	-				-1.2
3,117,468	-				-0.8
3,117,479	+				-2.3
3,117,479	+				-1.1
3,117,479	+				+1.2
3,117,480	-				+0.2
3,117,480	-				+2.1
3,117,480	-				-0.5
3,117,480	-				-2.0
3,117,483	+				-1.1
3,117,501	+				-0.5
3,117,506	-				-0.3
3,117,519	+				-1.0
3,117,520	-				+1.2
3,117,523	+				+1.8
3,117,523	+				-0.5
3,117,523	+				+0.5
3,117,523	+				+0.0
3,117,523	+				+0.4
3,117,524	-				+0.8
3,117,524	-				-1.4
3,117,524	-				+0.8
3,117,543	+				-0.5
3,117,543	+				-0.3
3,117,543	+				-1.8
3,117,543	+				+0.5
3,117,543	+				-1.5
3,117,544	-				-0.2
3,117,544	-				-1.4
3,117,544	-				+0.5
3,117,544	-				-1.1
3,117,544	-				-0.5
3,117,544	-				-0.9
3,117,547	+				-0.5
3,117,547	+				-2.9
3,117,547	+				-0.8
3,117,547	+				-1.2
3,117,548	-				-0.9
3,117,548	-				+1.0
3,117,548	-				+0.9
3,117,551	+				-1.8
3,117,551	+				+0.4
3,117,552	-				-0.8
3,117,595	-				+0.2
3,117,677	+				-2.1
3,117,677	+				-1.0
3,117,695	+		Sama_2604	0.10	-0.2
3,117,695	+		Sama_2604	0.10	+0.1
3,117,695	+		Sama_2604	0.10	-0.1
3,117,695	+		Sama_2604	0.10	-1.8
3,117,695	+		Sama_2604	0.10	+0.6
3,117,695	+		Sama_2604	0.10	+2.2
3,117,695	+		Sama_2604	0.10	+1.2
3,117,696	-		Sama_2604	0.10	-1.6
3,117,703	+		Sama_2604	0.11	+0.7
3,117,703	+		Sama_2604	0.11	-1.5
3,117,703	+		Sama_2604	0.11	-1.4
3,117,703	+		Sama_2604	0.11	+0.7
3,117,703	+		Sama_2604	0.11	+2.4
3,117,703	+		Sama_2604	0.11	+0.5
3,117,703	+		Sama_2604	0.11	+0.6
3,117,703	+		Sama_2604	0.11	+0.5
3,117,703	+		Sama_2604	0.11	-0.4
3,117,703	+		Sama_2604	0.11	+0.5
3,117,703	+		Sama_2604	0.11	-0.1
3,117,703	+		Sama_2604	0.11	-1.2
3,117,703	+		Sama_2604	0.11	-1.2
3,117,703	+		Sama_2604	0.11	-0.0
3,117,703	+		Sama_2604	0.11	-1.4
3,117,703	+		Sama_2604	0.11	+0.3
3,117,704	-		Sama_2604	0.12	+0.0
3,117,704	-		Sama_2604	0.12	+0.1
3,117,704	-		Sama_2604	0.12	+0.2
3,117,704	-		Sama_2604	0.12	-1.5
3,117,704	-		Sama_2604	0.12	+0.5
3,117,704	-		Sama_2604	0.12	-1.6
3,117,704	-		Sama_2604	0.12	+1.4
3,117,704	-		Sama_2604	0.12	+1.0
3,117,704	-		Sama_2604	0.12	-0.4
3,117,704	-		Sama_2604	0.12	-1.2
3,117,704	-		Sama_2604	0.12	-1.2
3,117,779	+		Sama_2604	0.21	-0.2
3,117,779	+		Sama_2604	0.21	-2.0
3,117,780	-		Sama_2604	0.21	+1.8
3,117,780	-		Sama_2604	0.21	-0.2
3,117,780	-		Sama_2604	0.21	-2.8
3,117,780	-		Sama_2604	0.21	-1.0
3,117,783	+		Sama_2604	0.22	-1.2
3,117,783	+		Sama_2604	0.22	-1.5
3,117,783	+		Sama_2604	0.22	+0.6
3,117,783	+		Sama_2604	0.22	-0.2
3,117,783	+		Sama_2604	0.22	+3.4
3,117,783	+		Sama_2604	0.22	-2.5
3,117,784	-		Sama_2604	0.22	-0.1
3,117,784	-		Sama_2604	0.22	+0.0
3,117,784	-		Sama_2604	0.22	-0.5
3,117,784	-		Sama_2604	0.22	+0.2
3,117,784	-		Sama_2604	0.22	+1.6
3,117,784	-		Sama_2604	0.22	+0.5
3,117,784	-		Sama_2604	0.22	+1.1
3,117,784	-		Sama_2604	0.22	+1.8
3,117,784	-		Sama_2604	0.22	-0.8
3,117,784	-		Sama_2604	0.22	+0.0
3,117,834	+		Sama_2604	0.28	+0.1
3,117,835	-		Sama_2604	0.29	-0.3
3,117,835	-		Sama_2604	0.29	-0.4
3,117,838	+		Sama_2604	0.29	-0.5
3,117,838	+		Sama_2604	0.29	-0.6
3,117,838	+		Sama_2604	0.29	-0.7
3,117,838	+		Sama_2604	0.29	-0.8
3,117,839	-		Sama_2604	0.29	-0.6
3,117,892	+		Sama_2604	0.36	-1.6
3,117,893	-		Sama_2604	0.36	-1.2
3,117,896	+		Sama_2604	0.37	-1.1
3,117,896	+		Sama_2604	0.37	+0.8
3,117,897	-		Sama_2604	0.37	+0.1
3,117,897	-		Sama_2604	0.37	-0.5
3,117,902	+		Sama_2604	0.37	-0.5
3,117,902	+		Sama_2604	0.37	-1.0
3,117,903	-		Sama_2604	0.38	+0.6
3,117,949	+		Sama_2604	0.44	-0.8
3,117,949	+		Sama_2604	0.44	-0.1
3,117,950	-		Sama_2604	0.44	+0.8
3,117,950	-		Sama_2604	0.44	-0.2
3,118,076	+		Sama_2604	0.60	-0.5
3,118,076	+		Sama_2604	0.60	-0.5
3,118,102	-		Sama_2604	0.64	+0.2
3,118,128	+		Sama_2604	0.67	+0.1
3,118,129	-		Sama_2604	0.67	+4.1
3,118,174	-		Sama_2604	0.73	+0.5
3,118,210	+		Sama_2604	0.78	+1.4
3,118,211	-		Sama_2604	0.78	-0.2
3,118,211	-		Sama_2604	0.78	-1.9
3,118,249	+		Sama_2604	0.83	+0.2
3,118,250	-		Sama_2604	0.83	-0.2
3,118,250	-		Sama_2604	0.83	-1.0
3,118,250	-		Sama_2604	0.83	-0.5
3,118,250	-		Sama_2604	0.83	-0.8
3,118,287	+		Sama_2604	0.88	+0.8
3,118,288	-		Sama_2604	0.88	+0.2
3,118,312	+				-1.2
3,118,312	+				+0.5
3,118,312	+				-1.4
3,118,312	+				-1.0
3,118,312	+				+0.0
3,118,312	+				+0.2
3,118,312	+				-0.7
3,118,312	+				-0.3
3,118,312	+				-1.5
3,118,313	-				-1.6
3,118,313	-				-1.0
3,118,313	-				+0.2
3,118,313	-				+1.7
3,118,313	-				+1.2
3,118,313	-				+0.4
3,118,313	-				-0.5
3,118,314	+				+0.4
3,118,323	+				-0.2
3,118,332	+				+0.8
3,118,357	+				+1.1
3,118,358	-				-0.8
3,118,387	+				-1.6
3,118,388	-				+0.0
3,118,388	-				+1.8
3,118,388	-				+0.8
3,118,388	-				-0.1
3,118,388	-				-0.7
3,118,401	+				-1.1
3,118,401	+				+0.8
3,118,402	-				-0.6
3,118,402	-				-1.0
3,118,402	-				+0.7
3,118,405	+				-1.2
3,118,405	+				-1.0
3,118,405	+				-0.2
3,118,405	+				+0.3
3,118,405	+				-1.0
3,118,405	+				-0.8
3,118,406	-				-0.4
3,118,406	-				+0.5
3,118,406	-				-0.8
3,118,406	-				-1.7
3,118,406	-				-1.7
3,118,406	-				-0.4
3,118,406	-				-0.5
3,118,407	-				-1.2
3,118,429	+				+0.8
3,118,430	-				-0.6
3,118,430	-				+1.0
3,118,430	-				+0.1