Strain Fitness in Shewanella amazonensis SB2B around Sama_2343

Experiment: L-Serine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Serine
2,808,529	+		Sama_2342	0.11	-0.1
2,808,529	+		Sama_2342	0.11	-1.8
2,808,712	+		Sama_2342	0.27	+0.3
2,808,712	+		Sama_2342	0.27	+0.8
2,808,717	-		Sama_2342	0.28	+0.8
2,808,785	+		Sama_2342	0.34	-1.2
2,808,785	+		Sama_2342	0.34	-1.2
2,808,822	+		Sama_2342	0.37	-1.6
2,808,822	+		Sama_2342	0.37	+0.6
2,808,822	+		Sama_2342	0.37	-0.2
2,808,823	-		Sama_2342	0.37	-1.4
2,808,823	-		Sama_2342	0.37	+1.2
2,808,823	-		Sama_2342	0.37	-1.8
2,808,823	-		Sama_2342	0.37	-0.6
2,808,823	-		Sama_2342	0.37	+0.6
2,808,823	-		Sama_2342	0.37	+2.0
2,808,871	+		Sama_2342	0.42	-1.2
2,808,872	-		Sama_2342	0.42	+0.6
2,808,872	-		Sama_2342	0.42	-2.1
2,808,872	-		Sama_2342	0.42	+1.6
2,808,894	-		Sama_2342	0.44	-0.4
2,809,021	+		Sama_2342	0.55	+1.0
2,809,021	+		Sama_2342	0.55	-0.6
2,809,022	-		Sama_2342	0.55	-0.0
2,809,022	-		Sama_2342	0.55	-0.8
2,809,022	-		Sama_2342	0.55	+0.4
2,809,022	-		Sama_2342	0.55	+0.6
2,809,108	+		Sama_2342	0.63	-1.2
2,809,108	+		Sama_2342	0.63	-1.3
2,809,108	+		Sama_2342	0.63	-1.6
2,809,108	+		Sama_2342	0.63	-0.4
2,809,109	-		Sama_2342	0.63	-0.2
2,809,109	-		Sama_2342	0.63	-0.0
2,809,109	-		Sama_2342	0.63	-2.2
2,809,109	-		Sama_2342	0.63	-0.0
2,809,109	-		Sama_2342	0.63	-0.4
2,809,109	-		Sama_2342	0.63	-0.4
2,809,109	-		Sama_2342	0.63	+1.6
2,809,109	-		Sama_2342	0.63	+1.0
2,809,109	-		Sama_2342	0.63	-0.4
2,809,172	+		Sama_2342	0.69	-1.8
2,809,172	+		Sama_2342	0.69	-1.8
2,809,173	-		Sama_2342	0.69	-0.7
2,809,173	-		Sama_2342	0.69	-0.9
2,809,240	-		Sama_2342	0.75	+0.6
2,809,261	+		Sama_2342	0.77	-0.9
2,809,262	-		Sama_2342	0.77	-1.8
2,809,262	-		Sama_2342	0.77	-1.2
2,809,266	-		Sama_2342	0.77	-0.4
2,809,329	+		Sama_2342	0.83	+1.6
2,809,329	+		Sama_2342	0.83	-0.4
2,809,329	+		Sama_2342	0.83	-0.6
2,809,329	+		Sama_2342	0.83	+1.7
2,809,330	-		Sama_2342	0.83	+1.1
2,809,394	+		Sama_2342	0.89	-0.8
2,809,414	-				-0.6
2,809,414	-				-1.2
2,809,414	-				-0.8
2,809,466	+				-0.5
2,809,467	-				-1.4
2,809,467	-				+0.6
2,809,467	-				-1.9
2,809,529	+				-2.2
2,809,529	+				+0.1
2,809,635	-				-1.3
2,809,635	-				-2.0
2,809,635	-				+0.4
2,809,647	+				-0.1
2,809,747	+				-2.7
2,809,755	-				+0.3
2,809,781	-				-0.6
2,809,811	+				-0.4
2,809,812	-				+0.3
2,809,852	+		Sama_2343	0.11	-0.6
2,809,852	+		Sama_2343	0.11	+1.6
2,809,852	+		Sama_2343	0.11	-2.4
2,809,853	-		Sama_2343	0.11	+1.1
2,809,940	-		Sama_2343	0.14	+1.6
2,810,052	+		Sama_2343	0.17	-0.8
2,810,052	+		Sama_2343	0.17	+1.3
2,810,052	+		Sama_2343	0.17	-0.2
2,810,052	+		Sama_2343	0.17	-0.6
2,810,074	+		Sama_2343	0.18	+0.2
2,810,075	-		Sama_2343	0.18	-1.1
2,810,159	+		Sama_2343	0.21	-0.8
2,810,159	+		Sama_2343	0.21	-1.8
2,810,159	+		Sama_2343	0.21	-0.8
2,810,159	+		Sama_2343	0.21	+1.9
2,810,263	+		Sama_2343	0.24	-1.4
2,810,263	+		Sama_2343	0.24	+0.2
2,810,263	+		Sama_2343	0.24	-0.2
2,810,263	+		Sama_2343	0.24	-0.7
2,810,264	-		Sama_2343	0.24	+0.6
2,810,264	-		Sama_2343	0.24	+0.2
2,810,264	-		Sama_2343	0.24	-1.4
2,810,264	-		Sama_2343	0.24	+1.6
2,810,281	+		Sama_2343	0.25	-1.4
2,810,281	+		Sama_2343	0.25	-0.5
2,810,284	+		Sama_2343	0.25	-0.3
2,810,284	+		Sama_2343	0.25	+0.1
2,810,284	+		Sama_2343	0.25	-1.7
2,810,284	+		Sama_2343	0.25	-0.8
2,810,284	+		Sama_2343	0.25	-0.1
2,810,285	-		Sama_2343	0.25	-0.4
2,810,285	-		Sama_2343	0.25	-0.8
2,810,319	+		Sama_2343	0.26	-0.9
2,810,319	+		Sama_2343	0.26	-0.2
2,810,321	+		Sama_2343	0.26	-0.7
2,810,321	+		Sama_2343	0.26	-1.0
2,810,321	+		Sama_2343	0.26	-1.5
2,810,321	+		Sama_2343	0.26	+0.8
2,810,321	+		Sama_2343	0.26	-1.8
2,810,321	+		Sama_2343	0.26	+1.0
2,810,321	+		Sama_2343	0.26	+0.2
2,810,321	+		Sama_2343	0.26	+1.0
2,810,322	-		Sama_2343	0.26	-0.4
2,810,322	-		Sama_2343	0.26	-0.8
2,810,322	-		Sama_2343	0.26	-0.6
2,810,322	-		Sama_2343	0.26	-0.4
2,810,322	-		Sama_2343	0.26	-0.5
2,810,384	+		Sama_2343	0.28	-0.8
2,810,385	-		Sama_2343	0.28	+0.4
2,810,385	-		Sama_2343	0.28	-0.0
2,810,394	-		Sama_2343	0.28	-0.8
2,810,405	-		Sama_2343	0.29	-0.8
2,810,502	+		Sama_2343	0.32	-1.0
2,810,502	+		Sama_2343	0.32	-0.9
2,810,502	+		Sama_2343	0.32	-0.4
2,810,503	-		Sama_2343	0.32	-0.8
2,810,503	-		Sama_2343	0.32	-0.2
2,810,503	-		Sama_2343	0.32	+0.6
2,810,553	-		Sama_2343	0.34	+0.2
2,810,580	-		Sama_2343	0.34	-0.9
2,810,605	+		Sama_2343	0.35	-1.1
2,810,605	+		Sama_2343	0.35	-0.2
2,810,606	-		Sama_2343	0.35	-0.0
2,810,606	-		Sama_2343	0.35	+1.9
2,810,606	-		Sama_2343	0.35	-0.6
2,810,606	-		Sama_2343	0.35	-1.4
2,810,843	+		Sama_2343	0.43	+0.2
2,810,843	+		Sama_2343	0.43	+0.2
2,810,870	-		Sama_2343	0.44	+0.2
2,810,946	+		Sama_2343	0.46	-1.0
2,810,947	-		Sama_2343	0.46	+0.1
2,810,947	-		Sama_2343	0.46	-0.0
2,810,947	-		Sama_2343	0.46	-0.0
2,810,951	+		Sama_2343	0.46	-0.1
2,810,951	+		Sama_2343	0.46	+0.9
2,810,951	+		Sama_2343	0.46	+0.6
2,810,951	+		Sama_2343	0.46	-0.5
2,810,951	+		Sama_2343	0.46	-0.6
2,810,951	+		Sama_2343	0.46	-0.8
2,810,952	-		Sama_2343	0.47	-0.8
2,810,952	-		Sama_2343	0.47	-1.5
2,810,960	+		Sama_2343	0.47	-0.6
2,810,977	+		Sama_2343	0.47	+0.4
2,811,058	-		Sama_2343	0.50	-1.5
2,811,079	+		Sama_2343	0.51	+2.6
2,811,079	+		Sama_2343	0.51	-0.0
2,811,082	+		Sama_2343	0.51	+0.1
2,811,083	-		Sama_2343	0.51	+0.8
2,811,083	-		Sama_2343	0.51	+0.0
2,811,083	-		Sama_2343	0.51	-1.0
2,811,112	+		Sama_2343	0.52	-1.2
2,811,112	+		Sama_2343	0.52	-0.8
2,811,113	-		Sama_2343	0.52	-0.8
2,811,153	-		Sama_2343	0.53	-0.8
2,811,189	-		Sama_2343	0.54	-1.1
2,811,207	+		Sama_2343	0.55	+0.2
2,811,207	+		Sama_2343	0.55	+0.2
2,811,207	+		Sama_2343	0.55	-2.0
2,811,208	-		Sama_2343	0.55	-0.4
2,811,289	+		Sama_2343	0.58	-1.4
2,811,289	+		Sama_2343	0.58	-0.7
2,811,290	-		Sama_2343	0.58	+0.4
2,811,290	-		Sama_2343	0.58	+1.4
2,811,334	-		Sama_2343	0.59	+0.3
2,811,334	-		Sama_2343	0.59	-1.9
2,811,337	-		Sama_2343	0.59	-1.2
2,811,372	+		Sama_2343	0.60	+1.1
2,811,440	+		Sama_2343	0.62	-1.0
2,811,441	-		Sama_2343	0.62	-0.0
2,811,441	-		Sama_2343	0.62	-0.7
2,811,482	+		Sama_2343	0.64	-0.7
2,811,531	+		Sama_2343	0.65	+0.8
2,811,531	+		Sama_2343	0.65	+1.2
2,811,531	+		Sama_2343	0.65	-0.6
2,811,531	+		Sama_2343	0.65	-0.0
2,811,659	-		Sama_2343	0.70	-0.0
2,811,860	+		Sama_2343	0.76	+0.3
2,811,861	-		Sama_2343	0.76	-0.6
2,811,954	+		Sama_2343	0.79	-2.3
2,811,954	+		Sama_2343	0.79	-0.8
2,811,954	+		Sama_2343	0.79	+1.6
2,811,955	-		Sama_2343	0.79	-0.7
2,811,955	-		Sama_2343	0.79	-1.4
2,811,955	-		Sama_2343	0.79	-0.6
2,811,955	-		Sama_2343	0.79	-0.8
2,811,955	-		Sama_2343	0.79	-0.6
2,811,955	-		Sama_2343	0.79	-0.9
2,811,955	-		Sama_2343	0.79	-1.8
2,811,955	-		Sama_2343	0.79	-0.8
2,811,955	-		Sama_2343	0.79	+0.2
2,811,956	+		Sama_2343	0.79	-1.7
2,811,957	-		Sama_2343	0.79	+0.1
2,811,957	-		Sama_2343	0.79	-2.1
2,812,139	-		Sama_2343	0.85	-2.0
2,812,174	+		Sama_2343	0.86	-0.2
2,812,174	+		Sama_2343	0.86	-0.4
2,812,222	-		Sama_2343	0.88	-1.2
2,812,286	+				-1.2
2,812,287	-				+0.1
2,812,287	-				+0.6
2,812,289	+				+0.1
2,812,289	+				-0.8
2,812,289	+				-0.8
2,812,289	+				+0.1
2,812,289	+				-2.7
2,812,290	-				-1.2
2,812,290	-				-0.0
2,812,440	-				-1.3
2,812,440	-				-0.0
2,812,536	+				-0.4
2,812,537	-				+0.7
2,812,537	-				-0.9
2,812,608	+		Sama_2344	0.11	+0.8
2,812,702	+		Sama_2344	0.50	-1.2
2,812,703	-		Sama_2344	0.50	-0.6
2,812,703	-		Sama_2344	0.50	+2.6
2,812,703	-		Sama_2344	0.50	-0.4
2,812,720	-		Sama_2344	0.57	+2.2
2,812,760	-		Sama_2344	0.73	-0.0
2,812,782	+		Sama_2344	0.82	+0.1
2,812,837	+				+0.2
2,812,838	-				+1.0
2,812,838	-				-0.8
2,812,865	-				-2.7
2,812,865	-				-1.1
2,812,906	-				+0.4
2,812,930	-				-1.3
2,812,938	+				+0.1
2,812,938	+				+1.3
2,812,975	-				+0.3
2,812,975	-				-0.0
2,813,001	+				+0.3
2,813,052	+				+2.3
2,813,052	+				-0.1
2,813,052	+				+0.4
2,813,052	+				+0.5
2,813,052	+				+0.1
2,813,052	+				-0.2
2,813,053	-				-0.3
2,813,053	-				+0.6
2,813,053	-				-0.1
2,813,053	-				-0.3
2,813,064	+				+1.1
2,813,064	+				-0.8
2,813,065	-				-0.4
2,813,084	+				-0.8
2,813,084	+				-1.8
2,813,084	+				-0.1
2,813,084	+				-1.8
2,813,084	+				+0.2
2,813,085	-				-0.2
2,813,085	-				-0.3
2,813,085	-				-0.2
2,813,085	-				-0.9
2,813,105	-				-0.4
2,813,105	-				-0.4
2,813,105	-				-0.4
2,813,111	+				-1.4
2,813,111	+				-0.9
2,813,111	+				-0.4
2,813,112	-				-0.9
2,813,149	+				-1.3
2,813,149	+				-0.4
2,813,149	+				-0.2
2,813,149	+				-0.8
2,813,150	-				-0.4
2,813,150	-				+0.6
2,813,150	-				-0.5
2,813,150	-				-2.0
2,813,150	-				-1.8
2,813,237	+				-1.3
2,813,238	-				-1.0
2,813,242	-				-0.0
2,813,242	-				-1.2
2,813,242	-				+0.2
2,813,245	+				-0.0
2,813,246	-				-1.4
2,813,314	+				-0.1
2,813,314	+				-1.3
2,813,315	-				-1.4
2,813,317	+				-1.6
2,813,318	-				-0.6
2,813,338	+				-0.0
2,813,338	+				+0.6
2,813,338	+				+0.2
2,813,338	+				-2.0
2,813,338	+				+0.8
2,813,339	-				-0.8
2,813,339	-				-0.6
2,813,397	-				+0.1
2,813,397	-				-0.0
2,813,407	-				+0.2
2,813,454	+				-0.4
2,813,454	+				-2.1
2,813,455	-				-1.4
2,813,455	-				-0.3
2,813,455	-				-0.1
2,813,455	-				-1.0
2,813,459	+				-1.8
2,813,460	-				-2.3
2,813,481	-				+0.8
2,813,498	+				-1.0
2,813,498	+				-1.0
2,813,498	+				-0.2
2,813,499	-				-0.5
2,813,499	-				-0.0
2,813,499	-				-0.0
2,813,499	-				+0.9
2,813,535	+				-0.2
2,813,536	-				-1.0
2,813,580	+				-0.4
2,813,585	+				+0.8
2,813,585	+				+0.6
2,813,585	+				-0.5
2,813,585	+				-0.2
2,813,585	+				+0.6
2,813,585	+				+0.2
2,813,585	+				+0.4
2,813,586	-				-0.2
2,813,586	-				-0.4
2,813,586	-				+0.2
2,813,586	-				-0.0