Strain Fitness in Shewanella amazonensis SB2B around Sama_2024

Experiment: L-Serine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Serine
2,458,405	+				+0.5
2,458,430	+				+0.8
2,458,462	+				-1.0
2,458,462	+				-1.1
2,458,462	+				+1.5
2,458,463	-				-1.3
2,458,463	-				-0.2
2,458,463	-				-0.1
2,458,483	+				+0.1
2,458,483	+				+1.2
2,458,484	-				+1.5
2,458,486	+				+1.1
2,458,486	+				+1.1
2,458,487	-				+0.7
2,458,487	-				-1.0
2,458,487	-				+0.8
2,458,492	-				-0.3
2,458,527	-		Sama_2022	0.14	+0.2
2,458,670	+		Sama_2022	0.35	-1.5
2,458,670	+		Sama_2022	0.35	+0.8
2,458,671	-		Sama_2022	0.36	-1.7
2,458,783	-		Sama_2022	0.52	+0.2
2,458,872	+		Sama_2022	0.65	+0.1
2,458,872	+		Sama_2022	0.65	+0.5
2,458,887	-		Sama_2022	0.67	+3.9
2,458,887	-		Sama_2022	0.67	+0.5
2,458,902	+		Sama_2022	0.69	+1.5
2,458,902	+		Sama_2022	0.69	+1.9
2,458,902	+		Sama_2022	0.69	+0.9
2,458,902	+		Sama_2022	0.69	+0.9
2,458,903	-		Sama_2022	0.70	-0.1
2,458,903	-		Sama_2022	0.70	+2.0
2,458,903	-		Sama_2022	0.70	-1.1
2,458,903	-		Sama_2022	0.70	+1.9
2,458,904	+		Sama_2022	0.70	-0.8
2,458,904	+		Sama_2022	0.70	+1.3
2,458,904	+		Sama_2022	0.70	+0.5
2,458,904	+		Sama_2022	0.70	-1.3
2,458,904	+		Sama_2022	0.70	+0.9
2,458,905	-		Sama_2022	0.70	+0.2
2,458,905	-		Sama_2022	0.70	-1.3
2,458,949	-		Sama_2022	0.76	+0.7
2,458,949	-		Sama_2022	0.76	-1.5
2,458,950	+		Sama_2022	0.77	+0.2
2,458,951	-		Sama_2022	0.77	-0.8
2,458,951	-		Sama_2022	0.77	+0.2
2,458,951	-		Sama_2022	0.77	-1.1
2,459,078	-				+0.2
2,459,114	+				+0.8
2,459,122	-				-1.8
2,459,138	+		Sama_2023	0.11	-0.8
2,459,180	-		Sama_2023	0.29	-1.3
2,459,180	-		Sama_2023	0.29	+0.5
2,459,218	+		Sama_2023	0.45	-1.7
2,459,218	+		Sama_2023	0.45	-0.1
2,459,218	+		Sama_2023	0.45	+2.5
2,459,219	-		Sama_2023	0.46	-1.7
2,459,219	-		Sama_2023	0.46	-0.1
2,459,219	-		Sama_2023	0.46	-0.8
2,459,244	+		Sama_2023	0.57	+0.3
2,459,245	-		Sama_2023	0.57	-0.5
2,459,383	-				-1.3
2,459,385	+				-0.0
2,459,386	-				-1.6
2,459,391	+				-0.4
2,459,391	+				-0.1
2,459,392	-				+0.3
2,459,407	+				-0.7
2,459,407	+				+0.2
2,459,408	-				+0.2
2,459,408	-				-0.8
2,459,438	+				-1.7
2,459,438	+				+0.2
2,459,438	+				-0.9
2,459,439	-				+2.5
2,459,439	-				+0.9
2,459,441	+				-0.3
2,459,442	-				+0.5
2,459,463	-		Sama_2024	0.11	-1.4
2,459,550	+		Sama_2024	0.20	+0.1
2,459,551	-		Sama_2024	0.20	-0.2
2,459,556	+		Sama_2024	0.20	+1.5
2,459,615	+		Sama_2024	0.26	-0.2
2,459,616	-		Sama_2024	0.26	-1.5
2,459,627	+		Sama_2024	0.27	+0.1
2,459,628	-		Sama_2024	0.27	-0.5
2,459,628	-		Sama_2024	0.27	-0.6
2,459,628	-		Sama_2024	0.27	-0.1
2,459,628	-		Sama_2024	0.27	-0.9
2,459,628	-		Sama_2024	0.27	+0.5
2,459,631	+		Sama_2024	0.28	-0.3
2,459,631	+		Sama_2024	0.28	-0.2
2,459,632	-		Sama_2024	0.28	-2.3
2,459,632	-		Sama_2024	0.28	+0.4
2,459,769	+		Sama_2024	0.42	-0.1
2,459,770	-		Sama_2024	0.42	-0.1
2,459,770	-		Sama_2024	0.42	+0.4
2,459,813	+		Sama_2024	0.46	+0.3
2,459,813	+		Sama_2024	0.46	+0.5
2,459,813	+		Sama_2024	0.46	+0.3
2,459,814	-		Sama_2024	0.46	-0.8
2,459,953	+		Sama_2024	0.60	+0.2
2,459,958	+		Sama_2024	0.60	+0.3
2,459,958	+		Sama_2024	0.60	+0.9
2,459,959	-		Sama_2024	0.60	+0.2
2,459,959	-		Sama_2024	0.60	+0.7
2,459,959	-		Sama_2024	0.60	-0.9
2,459,959	-		Sama_2024	0.60	-1.3
2,459,960	+		Sama_2024	0.61	-1.0
2,459,961	-		Sama_2024	0.61	-0.7
2,459,961	-		Sama_2024	0.61	-2.3
2,460,089	+		Sama_2024	0.73	+1.4
2,460,089	+		Sama_2024	0.73	-1.7
2,460,089	+		Sama_2024	0.73	+0.1
2,460,089	+		Sama_2024	0.73	+0.3
2,460,090	-		Sama_2024	0.74	+0.0
2,460,090	-		Sama_2024	0.74	+0.4
2,460,090	-		Sama_2024	0.74	-0.8
2,460,090	-		Sama_2024	0.74	+0.2
2,460,090	-		Sama_2024	0.74	-1.7
2,460,090	-		Sama_2024	0.74	+1.2
2,460,090	-		Sama_2024	0.74	-0.5
2,460,090	-		Sama_2024	0.74	-1.4
2,460,090	-		Sama_2024	0.74	-1.5
2,460,090	-		Sama_2024	0.74	-0.9
2,460,126	-		Sama_2024	0.77	-0.3
2,460,150	+		Sama_2024	0.80	-0.8
2,460,151	-		Sama_2024	0.80	-0.3
2,460,151	-		Sama_2024	0.80	-0.7
2,460,289	+				-0.2
2,460,308	+				+0.1
2,460,315	+				+0.3
2,460,315	+				-0.7
2,460,316	-				+1.2
2,460,316	-				+0.9
2,460,338	-				+1.3
2,460,382	+				+0.3
2,460,382	+				-1.2
2,460,382	+				-0.5
2,460,383	-				-0.7
2,460,383	-				-0.5
2,460,383	-				-1.1
2,460,388	+				+1.5
2,460,388	+				-1.9
2,460,388	+				-0.7
2,460,389	-				-0.4
2,460,389	-				+1.5
2,460,389	-				-0.3
2,460,389	-				-0.5
2,460,439	-				-1.3
2,460,462	+				+1.5
2,460,463	-				+1.3
2,460,469	+				+1.1
2,460,481	-				-0.7
2,460,492	-				-0.2
2,460,505	-				+0.2
2,460,513	-				+0.5
2,460,513	-				-0.5
2,460,558	-				-0.5
2,460,558	-				-0.1
2,460,558	-				-1.1
2,460,558	-				-1.9
2,460,558	-				+1.7
2,460,558	-				+0.0
2,460,558	-				-1.8
2,460,561	+				+1.5
2,460,561	+				-0.8
2,460,562	-				+0.5
2,460,562	-				-0.8
2,460,653	-		Sama_2025	0.11	+1.2
2,460,724	+		Sama_2025	0.15	-0.1
2,460,763	+		Sama_2025	0.17	+0.5
2,460,792	+		Sama_2025	0.18	+0.8
2,460,793	-		Sama_2025	0.18	-1.5
2,460,800	+		Sama_2025	0.19	-0.8
2,460,801	-		Sama_2025	0.19	-1.1
2,460,801	-		Sama_2025	0.19	-0.7
2,460,801	-		Sama_2025	0.19	+0.5
2,460,801	-		Sama_2025	0.19	+2.1
2,460,808	-		Sama_2025	0.19	+1.9
2,460,840	-		Sama_2025	0.21	-0.3
2,460,905	+		Sama_2025	0.24	+0.2
2,460,906	-		Sama_2025	0.24	+0.5
2,460,906	-		Sama_2025	0.24	-0.1
2,460,906	-		Sama_2025	0.24	-0.3
2,460,906	-		Sama_2025	0.24	-1.3
2,460,906	-		Sama_2025	0.24	+0.5
2,460,979	-		Sama_2025	0.28	+0.5
2,461,001	+		Sama_2025	0.29	+1.5
2,461,001	+		Sama_2025	0.29	+0.3
2,461,015	-		Sama_2025	0.30	-0.8
2,461,022	+		Sama_2025	0.30	-1.8
2,461,023	-		Sama_2025	0.30	-0.3
2,461,023	-		Sama_2025	0.30	-0.6
2,461,040	-		Sama_2025	0.31	-1.1
2,461,040	-		Sama_2025	0.31	-1.8
2,461,060	+		Sama_2025	0.32	+0.1
2,461,060	+		Sama_2025	0.32	-1.5
2,461,061	-		Sama_2025	0.32	-0.5
2,461,099	+		Sama_2025	0.34	-0.9
2,461,100	-		Sama_2025	0.34	+1.5
2,461,142	+		Sama_2025	0.36	+0.2
2,461,142	+		Sama_2025	0.36	+1.2
2,461,143	-		Sama_2025	0.37	+0.3
2,461,143	-		Sama_2025	0.37	-1.3
2,461,175	+		Sama_2025	0.38	-0.3
2,461,176	-		Sama_2025	0.38	-0.7
2,461,176	-		Sama_2025	0.38	-1.3
2,461,184	+		Sama_2025	0.39	+1.9
2,461,185	-		Sama_2025	0.39	-1.3
2,461,185	-		Sama_2025	0.39	-0.8
2,461,228	-		Sama_2025	0.41	-0.3
2,461,228	-		Sama_2025	0.41	-0.1
2,461,268	+		Sama_2025	0.43	-0.6
2,461,268	+		Sama_2025	0.43	-0.5
2,461,268	+		Sama_2025	0.43	-0.8
2,461,268	+		Sama_2025	0.43	+0.3
2,461,268	+		Sama_2025	0.43	+0.2
2,461,269	-		Sama_2025	0.43	+0.2
2,461,269	-		Sama_2025	0.43	-0.1
2,461,269	-		Sama_2025	0.43	+0.7
2,461,271	+		Sama_2025	0.43	-1.4
2,461,271	+		Sama_2025	0.43	+0.2
2,461,271	+		Sama_2025	0.43	+0.6
2,461,272	-		Sama_2025	0.43	-0.9
2,461,272	-		Sama_2025	0.43	-1.6
2,461,272	-		Sama_2025	0.43	+1.9
2,461,272	-		Sama_2025	0.43	+0.4
2,461,326	+		Sama_2025	0.46	-0.7
2,461,327	-		Sama_2025	0.46	+0.1
2,461,327	-		Sama_2025	0.46	-0.1
2,461,327	-		Sama_2025	0.46	-1.5
2,461,327	-		Sama_2025	0.46	-1.5
2,461,339	-		Sama_2025	0.47	-1.3