Strain Fitness in Shewanella amazonensis SB2B around Sama_R0050

Experiment: L-Serine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1535 and Sama_R0050 are separated by 394 nucleotidesSama_R0050 and Sama_R0051 are separated by 70 nucleotidesSama_R0051 and Sama_R0052 are separated by 120 nucleotidesSama_R0052 and Sama_R0053 are separated by 276 nucleotides Sama_1535: Sama_1535 - D,D-heptose 1,7-bisphosphate phosphatase (RefSeq), at 1,866,598 to 1,867,152 _1535 Sama_R0050: Sama_R0050 - 16S ribosomal RNA (RefSeq), at 1,867,547 to 1,869,083 _R0050 Sama_R0051: Sama_R0051 - tRNA-Ile (RefSeq), at 1,869,154 to 1,869,230 _R0051 Sama_R0052: Sama_R0052 - tRNA-Ala (RefSeq), at 1,869,351 to 1,869,426 _R0052 Sama_R0053: Sama_R0053 - 23S ribosomal RNA (RefSeq), at 1,869,703 to 1,872,616 _R0053 Position (kb) 1867 1868 1869 1870Strain fitness (log2 ratio) -1 0 1at 1866.564 kb on + strandat 1866.564 kb on + strandat 1866.567 kb on + strandat 1867.150 kb on + strandat 1867.151 kb on - strandat 1867.151 kb on - strandat 1867.219 kb on - strandat 1867.231 kb on - strandat 1867.233 kb on - strandat 1867.233 kb on - strandat 1867.278 kb on + strandat 1867.279 kb on - strandat 1867.279 kb on - strandat 1867.310 kb on + strandat 1867.313 kb on - strandat 1867.336 kb on + strandat 1867.367 kb on + strandat 1867.367 kb on + strandat 1867.368 kb on - strandat 1867.368 kb on - strandat 1867.369 kb on + strandat 1867.369 kb on + strandat 1867.404 kb on + strandat 1869.311 kb on + strandat 1869.311 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine
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1,866,564 + -0.2
1,866,564 + -1.3
1,866,567 + +0.4
1,867,150 + +0.3
1,867,151 - +1.5
1,867,151 - +0.1
1,867,219 - -0.5
1,867,231 - -0.9
1,867,233 - -0.1
1,867,233 - +0.7
1,867,278 + +0.7
1,867,279 - -0.2
1,867,279 - +1.0
1,867,310 + +1.1
1,867,313 - -0.1
1,867,336 + +0.4
1,867,367 + +1.0
1,867,367 + -1.3
1,867,368 - +0.6
1,867,368 - +0.1
1,867,369 + -0.5
1,867,369 + +0.3
1,867,404 + +0.1
1,869,311 + -0.5
1,869,311 + -0.9

Or see this region's nucleotide sequence