Strain Fitness in Shewanella amazonensis SB2B around Sama_1481

Experiment: L-Serine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Serine
1,790,087	+		Sama_1478	0.75	+0.9
1,790,087	+		Sama_1478	0.75	-1.0
1,790,088	-		Sama_1478	0.75	+0.9
1,790,117	+		Sama_1478	0.78	-0.5
1,790,118	-		Sama_1478	0.78	-0.5
1,790,119	+		Sama_1478	0.78	-0.3
1,790,119	+		Sama_1478	0.78	-1.1
1,790,120	-		Sama_1478	0.78	-0.7
1,790,126	-		Sama_1478	0.79	-0.6
1,790,149	+		Sama_1478	0.81	-0.2
1,790,171	-		Sama_1478	0.83	+0.2
1,790,200	+		Sama_1478	0.86	-0.9
1,790,200	+		Sama_1478	0.86	-0.1
1,790,201	-		Sama_1478	0.86	-0.3
1,790,202	+		Sama_1478	0.86	+0.2
1,790,259	+				+0.5
1,790,259	+				-1.3
1,790,327	+				-1.1
1,790,340	+				-0.5
1,790,340	+				-0.1
1,790,340	+				+1.5
1,790,358	+				+0.9
1,790,361	-				+0.0
1,790,405	+				-1.1
1,790,405	+				+0.5
1,790,405	+				-0.7
1,790,405	+				+0.6
1,790,407	+				-1.0
1,790,407	+				-0.3
1,790,407	+				+0.2
1,790,407	+				+0.0
1,790,407	+				+0.1
1,790,407	+				+0.2
1,790,407	+				+0.0
1,790,408	-				-1.5
1,790,412	+				-1.2
1,790,412	+				-0.7
1,790,466	-				-0.7
1,790,466	-				+0.5
1,790,466	-				-1.2
1,790,466	-				+0.6
1,790,484	-				+0.0
1,790,518	-		Sama_1479	0.11	-0.7
1,790,786	-				-0.5
1,790,899	-		Sama_1480	0.46	-0.1
1,790,902	-		Sama_1480	0.48	-1.0
1,790,902	-		Sama_1480	0.48	-1.7
1,790,954	-		Sama_1480	0.75	-0.8
1,790,954	-		Sama_1480	0.75	-0.3
1,790,960	-		Sama_1480	0.78	-1.1
1,790,993	-				+0.5
1,791,081	+				-1.0
1,791,100	+				+0.2
1,791,111	+				+1.5
1,791,111	+				-0.7
1,791,111	+				+1.3
1,791,113	+				+0.0
1,791,138	-				+0.5
1,791,138	-				-1.7
1,791,145	-				+0.2
1,791,145	-				-1.9
1,791,234	+				-0.1
1,791,235	-				+2.2
1,791,375	+		Sama_1481	0.11	-0.3
1,791,375	+		Sama_1481	0.11	-0.3
1,791,376	-		Sama_1481	0.11	+0.5
1,791,376	-		Sama_1481	0.11	+0.6
1,791,405	-		Sama_1481	0.12	-2.2
1,791,412	-		Sama_1481	0.12	+0.1
1,791,463	+		Sama_1481	0.14	-0.8
1,791,463	+		Sama_1481	0.14	+0.2
1,791,463	+		Sama_1481	0.14	-2.4
1,791,464	-		Sama_1481	0.14	-1.0
1,791,464	-		Sama_1481	0.14	-1.0
1,791,551	+		Sama_1481	0.16	-0.8
1,791,565	-		Sama_1481	0.17	-0.1
1,791,612	-		Sama_1481	0.18	-0.8
1,791,781	-		Sama_1481	0.23	-0.2
1,791,781	-		Sama_1481	0.23	-0.5
1,791,781	-		Sama_1481	0.23	+1.1
1,791,831	+		Sama_1481	0.25	+0.5
1,791,948	-		Sama_1481	0.28	+0.2
1,791,948	-		Sama_1481	0.28	+0.5
1,791,973	-		Sama_1481	0.29	-0.8
1,791,973	-		Sama_1481	0.29	-1.0
1,791,996	+		Sama_1481	0.30	-1.2
1,792,078	-		Sama_1481	0.32	+0.7
1,792,078	-		Sama_1481	0.32	+0.4
1,792,078	-		Sama_1481	0.32	+0.7
1,792,121	+		Sama_1481	0.34	-0.1
1,792,166	+		Sama_1481	0.35	+0.2
1,792,245	+		Sama_1481	0.37	+1.2
1,792,245	+		Sama_1481	0.37	+0.8
1,792,245	+		Sama_1481	0.37	-1.2
1,792,246	-		Sama_1481	0.37	-0.6
1,792,246	-		Sama_1481	0.37	+0.2
1,792,275	+		Sama_1481	0.38	-0.5
1,792,275	+		Sama_1481	0.38	-0.8
1,792,287	+		Sama_1481	0.39	+0.6
1,792,287	+		Sama_1481	0.39	+1.2
1,792,429	-		Sama_1481	0.43	-0.5
1,792,429	-		Sama_1481	0.43	-0.4
1,792,481	-		Sama_1481	0.44	-1.1
1,792,511	+		Sama_1481	0.45	-0.3
1,792,512	-		Sama_1481	0.45	+1.5
1,792,550	-		Sama_1481	0.47	-1.3
1,792,550	-		Sama_1481	0.47	-0.3
1,792,854	+		Sama_1481	0.56	+0.1
1,792,855	-		Sama_1481	0.56	-1.5
1,792,866	+		Sama_1481	0.56	-0.6
1,792,878	+		Sama_1481	0.56	+0.8
1,792,878	+		Sama_1481	0.56	-0.4
1,793,019	+		Sama_1481	0.61	-2.4
1,793,019	+		Sama_1481	0.61	-0.5
1,793,036	+		Sama_1481	0.61	-0.9
1,793,036	+		Sama_1481	0.61	-1.0
1,793,036	+		Sama_1481	0.61	+0.5
1,793,037	-		Sama_1481	0.61	-0.7
1,793,037	-		Sama_1481	0.61	-0.5
1,793,037	-		Sama_1481	0.61	+1.0
1,793,037	-		Sama_1481	0.61	+1.0
1,793,037	-		Sama_1481	0.61	+1.5
1,793,414	+		Sama_1481	0.73	-1.4
1,793,414	+		Sama_1481	0.73	-1.3
1,793,414	+		Sama_1481	0.73	-0.9
1,793,415	-		Sama_1481	0.73	+0.7
1,793,427	+		Sama_1481	0.73	+0.5
1,793,427	+		Sama_1481	0.73	-1.3
1,793,428	-		Sama_1481	0.73	-0.1
1,793,428	-		Sama_1481	0.73	+0.5
1,793,449	+		Sama_1481	0.74	-0.5
1,793,450	-		Sama_1481	0.74	+0.2
1,793,450	-		Sama_1481	0.74	-0.6
1,793,501	+		Sama_1481	0.75	+1.3
1,793,501	+		Sama_1481	0.75	+1.3
1,793,502	-		Sama_1481	0.75	-0.1
1,793,571	+		Sama_1481	0.77	+0.5
1,793,592	+		Sama_1481	0.78	-1.3
1,793,592	+		Sama_1481	0.78	+0.7
1,793,592	+		Sama_1481	0.78	-1.1
1,793,592	+		Sama_1481	0.78	+0.5
1,793,807	-		Sama_1481	0.85	+0.1
1,793,837	+		Sama_1481	0.86	+0.5
1,793,837	+		Sama_1481	0.86	+1.1
1,793,837	+		Sama_1481	0.86	+1.5
1,793,841	+		Sama_1481	0.86	+0.2
1,793,841	+		Sama_1481	0.86	-0.6
1,793,841	+		Sama_1481	0.86	-1.4
1,793,841	+		Sama_1481	0.86	-1.2
1,793,841	+		Sama_1481	0.86	+1.5
1,793,841	+		Sama_1481	0.86	+1.5
1,793,841	+		Sama_1481	0.86	+0.8
1,793,842	-		Sama_1481	0.86	+1.2
1,793,842	-		Sama_1481	0.86	-2.2
1,793,842	-		Sama_1481	0.86	-0.2
1,793,864	+		Sama_1481	0.86	+0.3
1,793,922	-		Sama_1481	0.88	-1.0
1,793,959	+		Sama_1481	0.89	+0.8
1,793,959	+		Sama_1481	0.89	-0.2
1,793,959	+		Sama_1481	0.89	+0.7
1,793,959	+		Sama_1481	0.89	-0.1
1,793,959	+		Sama_1481	0.89	-0.3
1,793,959	+		Sama_1481	0.89	-0.5
1,793,959	+		Sama_1481	0.89	+0.6
1,793,959	+		Sama_1481	0.89	-1.7
1,793,959	+		Sama_1481	0.89	+0.5
1,793,960	-		Sama_1481	0.89	-0.2
1,793,960	-		Sama_1481	0.89	+0.1
1,793,960	-		Sama_1481	0.89	-1.8
1,793,960	-		Sama_1481	0.89	+0.1
1,793,960	-		Sama_1481	0.89	+0.8
1,793,960	-		Sama_1481	0.89	-1.3
1,793,978	+		Sama_1481	0.90	-2.4
1,793,978	+		Sama_1481	0.90	-1.1
1,793,979	-		Sama_1481	0.90	+0.5
1,794,016	+				-1.5
1,794,170	+				-0.4
1,794,328	+				-0.1
1,794,328	+				-0.3
1,794,352	-				+2.1
1,794,370	+				-0.2
1,794,374	+				-1.2
1,794,374	+				+0.3
1,794,375	-				+0.2
1,794,415	+				-1.5
1,794,415	+				-0.0
1,794,415	+				-1.5
1,794,415	+				+1.5
1,794,453	+				-1.6
1,794,454	-				-1.7
1,794,454	-				+0.1
1,794,454	-				-0.6
1,794,595	+		Sama_1482	0.10	-0.7
1,794,595	+		Sama_1482	0.10	+0.7
1,794,595	+		Sama_1482	0.10	-0.1
1,794,596	-		Sama_1482	0.10	-1.7
1,794,601	-		Sama_1482	0.11	-0.8
1,794,601	-		Sama_1482	0.11	-0.5
1,794,601	-		Sama_1482	0.11	-0.4
1,794,733	+		Sama_1482	0.20	-0.1
1,794,784	+		Sama_1482	0.24	-0.3
1,794,784	+		Sama_1482	0.24	-0.8
1,794,784	+		Sama_1482	0.24	-1.0
1,794,785	-		Sama_1482	0.24	-0.8
1,794,785	-		Sama_1482	0.24	-0.7
1,794,785	-		Sama_1482	0.24	-0.2
1,794,793	-		Sama_1482	0.24	-0.4
1,794,832	+		Sama_1482	0.27	-0.2
1,795,046	+		Sama_1482	0.43	+0.5
1,795,046	+		Sama_1482	0.43	+0.5
1,795,046	+		Sama_1482	0.43	+0.9
1,795,047	-		Sama_1482	0.43	+0.1
1,795,047	-		Sama_1482	0.43	-0.7
1,795,047	-		Sama_1482	0.43	-2.4
1,795,047	-		Sama_1482	0.43	+0.6
1,795,047	-		Sama_1482	0.43	+1.0
1,795,155	-		Sama_1482	0.51	-0.7
1,795,155	-		Sama_1482	0.51	-0.4
1,795,155	-		Sama_1482	0.51	+0.2
1,795,155	-		Sama_1482	0.51	-1.8
1,795,155	-		Sama_1482	0.51	+0.1
1,795,155	-		Sama_1482	0.51	+0.5
1,795,262	+		Sama_1482	0.58	+0.0
1,795,269	+		Sama_1482	0.59	-1.3
1,795,269	+		Sama_1482	0.59	-0.5
1,795,269	+		Sama_1482	0.59	-1.2
1,795,269	+		Sama_1482	0.59	+0.9
1,795,269	+		Sama_1482	0.59	+0.6
1,795,269	+		Sama_1482	0.59	-0.3
1,795,270	-		Sama_1482	0.59	+0.1
1,795,271	+		Sama_1482	0.59	-0.3
1,795,271	+		Sama_1482	0.59	-1.8
1,795,271	+		Sama_1482	0.59	-0.0
1,795,272	-		Sama_1482	0.59	-2.0
1,795,272	-		Sama_1482	0.59	-1.4
1,795,272	-		Sama_1482	0.59	+0.5
1,795,272	-		Sama_1482	0.59	-0.1
1,795,272	-		Sama_1482	0.59	-2.3