Experiment: L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1332 and Sama_1333 are separated by 64 nucleotides Sama_1333 and Sama_1334 overlap by 4 nucleotides Sama_1334 and Sama_1335 are separated by 197 nucleotides Sama_1335 and Sama_1336 are separated by 30 nucleotides
Sama_1332: Sama_1332 - lipoprotein releasing system transmembrane protein LolE (RefSeq), at 1,623,415 to 1,624,650
_1332
Sama_1333: Sama_1333 - lipoprotein releasing system ATP-binding protein LolD (RefSeq), at 1,624,715 to 1,625,404
_1333
Sama_1334: Sama_1334 - LolC/E family lipoprotein releasing system, transmembrane protein (RefSeq), at 1,625,401 to 1,626,663
_1334
Sama_1335: Sama_1335 - hypothetical protein (RefSeq), at 1,626,861 to 1,627,370
_1335
Sama_1336: Sama_1336 - DNA internalization-related competence protein ComEC/Rec2 (RefSeq), at 1,627,401 to 1,629,698
_1336
Position (kb)
1625
1626
1627 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1624.648 kb on + strand at 1624.663 kb on + strand at 1626.784 kb on + strand at 1626.785 kb on - strand at 1626.803 kb on - strand at 1627.371 kb on - strand at 1627.395 kb on - strand at 1627.395 kb on - strand at 1627.395 kb on - strand at 1627.570 kb on - strand at 1627.578 kb on - strand at 1627.637 kb on - strand, within Sama_1336 at 1627.637 kb on - strand, within Sama_1336 at 1627.640 kb on - strand, within Sama_1336 at 1627.640 kb on - strand, within Sama_1336 at 1627.640 kb on - strand, within Sama_1336 at 1627.640 kb on - strand, within Sama_1336
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine remove 1,624,648 + +0.9 1,624,663 + -1.3 1,626,784 + +0.1 1,626,785 - -1.2 1,626,803 - -0.0 1,627,371 - -2.1 1,627,395 - -1.0 1,627,395 - +0.8 1,627,395 - +0.1 1,627,570 - +1.0 1,627,578 - -1.7 1,627,637 - Sama_1336 0.10 -1.6 1,627,637 - Sama_1336 0.10 +1.9 1,627,640 - Sama_1336 0.10 +0.1 1,627,640 - Sama_1336 0.10 -0.0 1,627,640 - Sama_1336 0.10 +0.1 1,627,640 - Sama_1336 0.10 +1.7
Or see this region's nucleotide sequence