Strain Fitness in Shewanella amazonensis SB2B around Sama_1252

Experiment: L-Serine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Serine
1,536,946	+		Sama_1251	0.54	-0.6
1,536,946	+		Sama_1251	0.54	+0.2
1,536,948	+		Sama_1251	0.54	+0.9
1,536,948	+		Sama_1251	0.54	-1.0
1,536,948	+		Sama_1251	0.54	-1.6
1,536,948	+		Sama_1251	0.54	+0.6
1,536,948	+		Sama_1251	0.54	+1.3
1,536,948	+		Sama_1251	0.54	-1.6
1,536,952	+		Sama_1251	0.55	+0.6
1,536,952	+		Sama_1251	0.55	+0.0
1,536,952	+		Sama_1251	0.55	+1.6
1,536,952	+		Sama_1251	0.55	-0.5
1,536,972	+		Sama_1251	0.56	-2.4
1,536,972	+		Sama_1251	0.56	+1.0
1,537,039	+		Sama_1251	0.62	+0.5
1,537,039	+		Sama_1251	0.62	-1.4
1,537,039	+		Sama_1251	0.62	-2.3
1,537,040	-		Sama_1251	0.62	+0.3
1,537,044	+		Sama_1251	0.62	+1.2
1,537,078	+		Sama_1251	0.65	+0.9
1,537,078	+		Sama_1251	0.65	-2.0
1,537,123	+		Sama_1251	0.69	-0.1
1,537,134	+		Sama_1251	0.70	+0.0
1,537,134	+		Sama_1251	0.70	-2.0
1,537,138	+		Sama_1251	0.70	+0.7
1,537,138	+		Sama_1251	0.70	+0.2
1,537,138	+		Sama_1251	0.70	+2.0
1,537,138	+		Sama_1251	0.70	-0.3
1,537,138	+		Sama_1251	0.70	-1.2
1,537,144	+		Sama_1251	0.70	+0.2
1,537,144	+		Sama_1251	0.70	-2.4
1,537,161	+		Sama_1251	0.72	-1.1
1,537,161	+		Sama_1251	0.72	-0.6
1,537,161	+		Sama_1251	0.72	-0.4
1,537,161	+		Sama_1251	0.72	+0.6
1,537,172	+		Sama_1251	0.73	-0.2
1,537,172	+		Sama_1251	0.73	+0.3
1,537,172	+		Sama_1251	0.73	+1.9
1,537,172	+		Sama_1251	0.73	+0.2
1,537,172	+		Sama_1251	0.73	+0.3
1,537,172	+		Sama_1251	0.73	+0.9
1,537,172	+		Sama_1251	0.73	+2.0
1,537,172	+		Sama_1251	0.73	-2.8
1,537,172	+		Sama_1251	0.73	+0.0
1,537,172	+		Sama_1251	0.73	+0.0
1,537,172	+		Sama_1251	0.73	+0.6
1,537,172	+		Sama_1251	0.73	-0.4
1,537,172	+		Sama_1251	0.73	+0.0
1,537,172	+		Sama_1251	0.73	-0.4
1,537,172	+		Sama_1251	0.73	+0.3
1,537,172	+		Sama_1251	0.73	+0.0
1,537,172	+		Sama_1251	0.73	-0.2
1,537,172	+		Sama_1251	0.73	-0.5
1,537,173	-		Sama_1251	0.73	+0.0
1,537,173	-		Sama_1251	0.73	+1.0
1,537,200	+		Sama_1251	0.75	+0.1
1,537,250	+		Sama_1251	0.79	-0.1
1,537,255	+		Sama_1251	0.80	-1.2
1,537,255	+		Sama_1251	0.80	+0.7
1,537,255	+		Sama_1251	0.80	+0.0
1,537,255	+		Sama_1251	0.80	-0.8
1,537,255	+		Sama_1251	0.80	-0.1
1,537,255	+		Sama_1251	0.80	-1.3
1,537,257	+		Sama_1251	0.80	-0.4
1,537,257	+		Sama_1251	0.80	-0.7
1,537,257	+		Sama_1251	0.80	-2.0
1,537,282	+		Sama_1251	0.82	-2.1
1,537,352	+		Sama_1251	0.88	+0.5
1,537,357	+		Sama_1251	0.88	+0.6
1,537,357	+		Sama_1251	0.88	-0.3
1,537,358	-		Sama_1251	0.88	+0.6
1,537,358	-		Sama_1251	0.88	+0.9
1,537,368	+		Sama_1251	0.89	-0.8
1,537,384	+				+0.5
1,537,385	-				-1.3
1,537,398	+				+1.0
1,537,489	+				-0.2
1,537,577	-				-0.4
1,537,585	-				-0.1
1,537,594	+				+0.4
1,537,594	+				-0.6
1,537,594	+				-1.5
1,537,595	-				+0.8
1,537,610	+				+0.6
1,537,611	-				-1.3
1,537,614	+				-0.7
1,537,615	-				+0.9
1,537,615	-				-1.0
1,537,615	-				-0.2
1,537,615	-				-0.2
1,537,615	-				+0.9
1,537,615	-				+1.3
1,537,615	-				+1.0
1,537,673	+				-1.0
1,537,674	-				+2.0
1,537,674	-				+1.3
1,537,686	+				-1.2
1,537,714	+				+0.6
1,537,785	+				+1.0
1,537,786	-				+0.7
1,537,825	+				+0.3
1,537,825	+				+0.8
1,537,849	+				+1.7
1,537,860	+				+0.5
1,537,860	+				+1.3
1,537,861	-				+0.6
1,537,861	-				+1.0
1,537,898	+				+1.7
1,537,899	-				+0.8
1,537,899	-				+1.6
1,537,901	+				+1.5
1,537,901	+				+0.7
1,537,902	-				+2.2
1,537,902	-				+2.4
1,537,902	-				+1.8
1,537,902	-				+1.2
1,537,940	+				+1.3
1,537,940	+				+2.2
1,537,940	+				+1.6
1,537,940	+				+1.8
1,537,940	+				+1.9
1,537,940	+				+1.4
1,537,940	+				+1.7
1,537,940	+				+1.2
1,537,941	-				+2.2
1,537,941	-				+2.5
1,537,941	-				+1.8
1,537,941	-				+1.8
1,537,942	+				+1.9
1,537,942	+				+1.4
1,537,943	-				+0.4
1,537,943	-				+1.9
1,537,943	-				+0.7
1,537,943	-				+1.4
1,537,943	-				+0.9
1,537,982	+				+2.2
1,537,996	-				+1.5
1,538,004	+				+1.8
1,538,005	-				+1.5
1,538,005	-				+1.3
1,538,069	+				-0.7
1,538,069	+				+1.1
1,538,069	+				+1.6
1,538,069	+				+0.3
1,538,069	+				+0.3
1,538,069	+				+0.5
1,538,069	+				-0.6
1,538,070	-				+0.4
1,538,070	-				+1.1
1,538,070	-				+1.6
1,538,070	-				-0.4
1,538,073	+				+1.5
1,538,074	-				+1.6
1,538,091	-				+1.6
1,538,091	-				+0.3
1,538,091	-				+1.4
1,538,091	-				+2.8
1,538,193	+		Sama_1252	0.12	+1.0
1,538,194	-		Sama_1252	0.12	+2.0
1,538,244	+		Sama_1252	0.14	+1.6
1,538,245	-		Sama_1252	0.14	+1.0
1,538,245	-		Sama_1252	0.14	+0.8
1,538,250	+		Sama_1252	0.15	+2.0
1,538,250	+		Sama_1252	0.15	+1.7
1,538,257	+		Sama_1252	0.15	-1.0
1,538,257	+		Sama_1252	0.15	-0.3
1,538,257	+		Sama_1252	0.15	+1.9
1,538,257	+		Sama_1252	0.15	+2.4
1,538,257	+		Sama_1252	0.15	+1.0
1,538,258	-		Sama_1252	0.15	+1.4
1,538,258	-		Sama_1252	0.15	+1.9
1,538,258	-		Sama_1252	0.15	+2.2
1,538,258	-		Sama_1252	0.15	+0.4
1,538,268	+		Sama_1252	0.15	+1.1
1,538,327	+		Sama_1252	0.17	+1.9
1,538,327	+		Sama_1252	0.17	+3.4
1,538,328	-		Sama_1252	0.17	+2.2
1,538,328	-		Sama_1252	0.17	+1.7
1,538,361	+		Sama_1252	0.19	+1.7
1,538,361	+		Sama_1252	0.19	+2.2
1,538,380	+		Sama_1252	0.19	+1.0
1,538,381	-		Sama_1252	0.19	+2.5
1,538,436	+		Sama_1252	0.21	+3.2
1,538,437	-		Sama_1252	0.21	+0.4
1,538,464	-		Sama_1252	0.22	-0.4
1,538,464	-		Sama_1252	0.22	+1.7
1,538,464	-		Sama_1252	0.22	+2.1
1,538,477	-		Sama_1252	0.23	+0.9
1,538,532	-		Sama_1252	0.25	-0.8
1,538,571	+		Sama_1252	0.26	+1.8
1,538,572	-		Sama_1252	0.26	+1.6
1,538,596	+		Sama_1252	0.27	+1.4
1,538,596	+		Sama_1252	0.27	+2.2
1,538,596	+		Sama_1252	0.27	+1.0
1,538,596	+		Sama_1252	0.27	+0.3
1,538,596	+		Sama_1252	0.27	+1.4
1,538,596	+		Sama_1252	0.27	+0.9
1,538,596	+		Sama_1252	0.27	+0.8
1,538,597	-		Sama_1252	0.27	+1.2
1,538,630	+		Sama_1252	0.28	+5.1
1,538,630	+		Sama_1252	0.28	+1.1
1,538,630	+		Sama_1252	0.28	+2.0
1,538,631	-		Sama_1252	0.28	+1.8
1,538,631	-		Sama_1252	0.28	+0.2
1,538,684	-		Sama_1252	0.30	+1.6
1,538,689	+		Sama_1252	0.31	+0.6
1,538,689	+		Sama_1252	0.31	+1.8
1,538,689	+		Sama_1252	0.31	+1.3
1,538,690	-		Sama_1252	0.31	-1.1
1,538,690	-		Sama_1252	0.31	+1.1
1,538,704	+		Sama_1252	0.31	+1.6
1,538,705	-		Sama_1252	0.31	+1.9
1,538,705	-		Sama_1252	0.31	+1.6
1,538,705	-		Sama_1252	0.31	+1.0
1,538,872	+		Sama_1252	0.37	+1.9
1,538,873	-		Sama_1252	0.37	+1.6
1,538,873	-		Sama_1252	0.37	+0.5
1,538,873	-		Sama_1252	0.37	+2.6
1,538,966	+		Sama_1252	0.41	+2.5
1,538,967	-		Sama_1252	0.41	-2.0
1,538,967	-		Sama_1252	0.41	+0.6
1,538,967	-		Sama_1252	0.41	+0.1
1,538,995	+		Sama_1252	0.42	+1.6
1,538,996	-		Sama_1252	0.42	+0.8
1,538,996	-		Sama_1252	0.42	+1.7
1,538,996	-		Sama_1252	0.42	+0.0
1,538,998	+		Sama_1252	0.42	+1.9
1,539,013	+		Sama_1252	0.43	+1.0
1,539,013	+		Sama_1252	0.43	+1.6
1,539,013	+		Sama_1252	0.43	+1.8
1,539,013	+		Sama_1252	0.43	+1.1
1,539,014	-		Sama_1252	0.43	+1.4
1,539,014	-		Sama_1252	0.43	+1.1
1,539,028	+		Sama_1252	0.43	+2.5
1,539,028	+		Sama_1252	0.43	-0.7
1,539,028	+		Sama_1252	0.43	+1.9
1,539,029	-		Sama_1252	0.43	+1.9
1,539,029	-		Sama_1252	0.43	+0.0
1,539,029	-		Sama_1252	0.43	+0.6
1,539,029	-		Sama_1252	0.43	+1.6
1,539,029	-		Sama_1252	0.43	-1.2
1,539,106	-		Sama_1252	0.46	+0.0
1,539,126	+		Sama_1252	0.47	+1.6
1,539,150	+		Sama_1252	0.48	+0.8
1,539,175	+		Sama_1252	0.48	+1.1
1,539,185	+		Sama_1252	0.49	+0.6
1,539,185	+		Sama_1252	0.49	+1.4
1,539,186	-		Sama_1252	0.49	+2.0
1,539,186	-		Sama_1252	0.49	-0.4
1,539,186	-		Sama_1252	0.49	+1.0
1,539,189	+		Sama_1252	0.49	+1.7
1,539,190	-		Sama_1252	0.49	+1.8
1,539,231	+		Sama_1252	0.51	+0.4
1,539,231	+		Sama_1252	0.51	+0.6
1,539,232	-		Sama_1252	0.51	+2.4
1,539,317	-		Sama_1252	0.54	+1.8
1,539,326	+		Sama_1252	0.54	+1.4
1,539,327	-		Sama_1252	0.54	+1.3
1,539,327	-		Sama_1252	0.54	+1.1
1,539,358	+		Sama_1252	0.55	+0.2
1,539,358	+		Sama_1252	0.55	+0.9
1,539,359	-		Sama_1252	0.55	+2.2
1,539,365	+		Sama_1252	0.55	+2.1
1,539,365	+		Sama_1252	0.55	+1.4
1,539,365	+		Sama_1252	0.55	+2.6
1,539,365	+		Sama_1252	0.55	+1.9
1,539,366	-		Sama_1252	0.55	+1.2
1,539,366	-		Sama_1252	0.55	-0.1
1,539,391	+		Sama_1252	0.56	+0.8
1,539,391	+		Sama_1252	0.56	+1.8
1,539,392	-		Sama_1252	0.56	+2.0
1,539,409	+		Sama_1252	0.57	+0.4
1,539,461	+		Sama_1252	0.59	+0.0
1,539,479	+		Sama_1252	0.60	+0.6
1,539,480	-		Sama_1252	0.60	+0.9
1,539,484	+		Sama_1252	0.60	+2.6
1,539,485	-		Sama_1252	0.60	+0.6
1,539,516	+		Sama_1252	0.61	+2.6
1,539,516	+		Sama_1252	0.61	+2.4
1,539,516	+		Sama_1252	0.61	+1.5
1,539,517	-		Sama_1252	0.61	+1.4
1,539,574	-		Sama_1252	0.63	+1.6
1,539,616	+		Sama_1252	0.65	+2.1
1,539,616	+		Sama_1252	0.65	+0.2
1,539,616	+		Sama_1252	0.65	+4.8
1,539,616	+		Sama_1252	0.65	+1.4
1,539,616	+		Sama_1252	0.65	+0.9
1,539,617	-		Sama_1252	0.65	+2.9
1,539,617	-		Sama_1252	0.65	+1.1
1,539,617	-		Sama_1252	0.65	+1.0
1,539,617	-		Sama_1252	0.65	+3.9
1,539,617	-		Sama_1252	0.65	+1.6
1,539,660	+		Sama_1252	0.66	+1.4
1,539,660	+		Sama_1252	0.66	+2.1
1,539,660	+		Sama_1252	0.66	+0.9
1,539,660	+		Sama_1252	0.66	+1.2
1,539,661	-		Sama_1252	0.66	+0.8
1,539,661	-		Sama_1252	0.66	+2.1
1,539,661	-		Sama_1252	0.66	+2.8
1,539,667	+		Sama_1252	0.67	+1.1
1,539,667	+		Sama_1252	0.67	+1.2
1,539,667	+		Sama_1252	0.67	-0.7
1,539,667	+		Sama_1252	0.67	+2.2
1,539,667	+		Sama_1252	0.67	+2.2
1,539,668	-		Sama_1252	0.67	+0.9
1,539,668	-		Sama_1252	0.67	+2.9
1,539,697	-		Sama_1252	0.68	+3.0
1,539,759	+		Sama_1252	0.70	+1.1
1,539,759	+		Sama_1252	0.70	+1.0
1,539,759	+		Sama_1252	0.70	+2.9
1,539,759	+		Sama_1252	0.70	+1.2
1,539,759	+		Sama_1252	0.70	+2.0
1,539,760	-		Sama_1252	0.70	-1.5
1,539,760	-		Sama_1252	0.70	+1.6
1,539,760	-		Sama_1252	0.70	+1.8
1,539,760	-		Sama_1252	0.70	+0.6
1,539,760	-		Sama_1252	0.70	+0.4
1,539,764	+		Sama_1252	0.70	+1.4
1,539,764	+		Sama_1252	0.70	+1.4
1,539,764	+		Sama_1252	0.70	+1.3
1,539,764	+		Sama_1252	0.70	+0.0
1,539,765	-		Sama_1252	0.70	+0.6
1,539,765	-		Sama_1252	0.70	+1.4
1,539,824	+		Sama_1252	0.72	+2.6
1,539,827	-		Sama_1252	0.72	+0.3
1,539,862	+		Sama_1252	0.74	+1.4
1,539,863	-		Sama_1252	0.74	+1.7
1,539,863	-		Sama_1252	0.74	+1.6
1,539,863	-		Sama_1252	0.74	+1.3
1,540,015	+		Sama_1252	0.79	+1.6
1,540,044	+		Sama_1252	0.80	+0.8
1,540,044	+		Sama_1252	0.80	+1.3
1,540,045	-		Sama_1252	0.80	+1.6
1,540,071	+		Sama_1252	0.81	+0.8
1,540,071	+		Sama_1252	0.81	+2.4
1,540,072	-		Sama_1252	0.81	+1.0
1,540,090	+		Sama_1252	0.82	+1.4
1,540,109	-		Sama_1252	0.83	+2.8
1,540,109	-		Sama_1252	0.83	+1.8
1,540,159	+		Sama_1252	0.85	+2.0
1,540,159	+		Sama_1252	0.85	+1.0
1,540,159	+		Sama_1252	0.85	+0.0
1,540,159	+		Sama_1252	0.85	+1.8
1,540,171	+		Sama_1252	0.85	+3.2
1,540,171	+		Sama_1252	0.85	-0.2
1,540,171	+		Sama_1252	0.85	+2.8
1,540,171	+		Sama_1252	0.85	-0.1
1,540,171	+		Sama_1252	0.85	+1.4
1,540,172	-		Sama_1252	0.85	+1.2
1,540,172	-		Sama_1252	0.85	+1.6
1,540,172	-		Sama_1252	0.85	+1.5
1,540,172	-		Sama_1252	0.85	+1.4
1,540,177	+		Sama_1252	0.85	+1.6
1,540,178	-		Sama_1252	0.85	+1.3
1,540,178	-		Sama_1252	0.85	+1.9
1,540,187	-		Sama_1252	0.86	+1.4
1,540,187	-		Sama_1252	0.86	+1.8
1,540,219	-		Sama_1252	0.87	+1.3
1,540,291	+		Sama_1252	0.89	+2.6
1,540,292	-		Sama_1252	0.89	+1.0
1,540,292	-		Sama_1252	0.89	+0.4
1,540,303	-		Sama_1252	0.90	+1.8
1,540,303	-		Sama_1252	0.90	+1.4
1,540,303	-		Sama_1252	0.90	+2.0
1,540,303	-		Sama_1252	0.90	+1.4
1,540,303	-		Sama_1252	0.90	+2.1
1,540,313	+				+1.6
1,540,313	+				+3.8
1,540,313	+				+0.4
1,540,314	-				+2.4
1,540,314	-				+2.7
1,540,351	+				+1.8
1,540,351	+				+1.2
1,540,351	+				+0.8
1,540,352	-				+1.3
1,540,400	-				+2.9
1,540,409	+				-0.2
1,540,409	+				+2.5
1,540,416	+				+1.3
1,540,416	+				+0.8
1,540,416	+				+1.6
1,540,420	+				+2.1
1,540,420	+				+1.1
1,540,420	+				+0.0
1,540,420	+				+1.5
1,540,420	+				+1.4
1,540,421	-				+1.0
1,540,421	-				+0.8
1,540,421	-				+1.1
1,540,421	-				+1.6
1,540,421	-				+1.0
1,540,421	-				+0.8
1,540,421	-				+0.3
1,540,421	-				+1.6
1,540,421	-				+2.3
1,540,429	-				+0.7
1,540,462	-				+1.1
1,540,462	-				+1.3
1,540,486	+				+1.5
1,540,486	+				+0.8
1,540,486	+				+1.2
1,540,486	+				+1.7
1,540,486	+				+0.5
1,540,486	+				+0.8
1,540,486	+				+1.5
1,540,486	+				+1.2
1,540,486	+				+0.8
1,540,487	-				+1.3
1,540,487	-				+2.2
1,540,487	-				+0.5
1,540,487	-				+0.8
1,540,487	-				-0.4
1,540,487	-				+2.5
1,540,487	-				+1.4
1,540,487	-				+1.6
1,540,506	+				+1.2
1,540,507	-				+0.5
1,540,507	-				+1.9
1,540,529	-				+1.2
1,540,529	-				+1.6
1,540,552	+				+1.3
1,540,553	-				+0.4
1,540,569	+				+0.4
1,540,569	+				+2.8
1,540,569	+				+1.8
1,540,570	-				+1.2
1,540,576	+				+1.6
1,540,577	-				+1.2
1,540,577	-				+0.0
1,540,592	+				+0.6
1,540,592	+				+1.1
1,540,592	+				-1.0
1,540,593	-				+1.4
1,540,593	-				+0.2
1,540,597	+				-0.6
1,540,598	-				-0.1
1,540,632	+				+0.3
1,540,632	+				-0.3
1,540,633	-				+2.6
1,540,633	-				-0.7
1,540,640	+				+0.2
1,540,640	+				+0.9
1,540,640	+				+1.1
1,540,641	-				+1.4
1,540,641	-				+0.0
1,540,641	-				-1.6
1,540,653	+				-0.4
1,540,669	-				-0.4
1,540,773	-				-0.4
1,540,773	-				-0.7
1,540,838	+		Sama_1253	0.11	+1.0
1,540,869	-		Sama_1253	0.12	-0.8
1,540,881	+		Sama_1253	0.13	+0.2
1,540,884	-		Sama_1253	0.13	-0.4
1,540,907	+		Sama_1253	0.15	+0.3
1,540,908	-		Sama_1253	0.15	-0.1
1,541,037	+		Sama_1253	0.22	+0.2
1,541,154	+		Sama_1253	0.28	+0.3
1,541,154	+		Sama_1253	0.28	-1.8
1,541,160	+		Sama_1253	0.29	+0.5
1,541,160	+		Sama_1253	0.29	-0.4
1,541,173	-		Sama_1253	0.29	-0.2
1,541,256	+		Sama_1253	0.34	-0.8
1,541,256	+		Sama_1253	0.34	-0.4
1,541,257	-		Sama_1253	0.34	+0.8
1,541,257	-		Sama_1253	0.34	+0.6
1,541,378	+		Sama_1253	0.41	-0.7
1,541,378	+		Sama_1253	0.41	-0.1
1,541,386	-		Sama_1253	0.41	-1.4
1,541,422	-		Sama_1253	0.43	+0.6
1,541,429	-		Sama_1253	0.44	-1.7
1,541,429	-		Sama_1253	0.44	+0.0
1,541,439	-		Sama_1253	0.44	-0.5
1,541,442	+		Sama_1253	0.45	-1.0
1,541,443	-		Sama_1253	0.45	+0.6
1,541,443	-		Sama_1253	0.45	+0.9
1,541,443	-		Sama_1253	0.45	+0.1
1,541,481	-		Sama_1253	0.47	+1.3
1,541,494	-		Sama_1253	0.47	-1.9
1,541,537	+		Sama_1253	0.50	+1.1
1,541,538	-		Sama_1253	0.50	+0.8