Strain Fitness in Shewanella oneidensis MR-1 around SO2477

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO2476 and SO2477 are separated by 19 nucleotidesSO2477 and kdsB are separated by 82 nucleotideskdsB and SO2479 are separated by 28 nucleotides SO2476: SO2476 - polysaccharide biosynthesis protein (NCBI ptt file), at 2,596,996 to 2,598,183 SO2476 SO2477: SO2477 - alcohol dehydrogenase, iron-containing (NCBI ptt file), at 2,598,203 to 2,599,273 SO2477 SO2478: kdsB - 3-deoxy-D-manno-octulosonate cytidylyltransferase (NCBI ptt file), at 2,599,356 to 2,600,093 kdsB SO2479: SO2479 - hypothetical protein (NCBI ptt file), at 2,600,122 to 2,600,358 SO2479 Position (kb) 2598 2599 2600Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2597.335 kb on + strand, within SO2476at 2597.358 kb on - strand, within SO2476at 2597.374 kb on + strand, within SO2476at 2597.650 kb on + strand, within SO2476at 2597.719 kb on + strand, within SO2476at 2597.871 kb on - strand, within SO2476at 2597.905 kb on - strand, within SO2476at 2598.000 kb on + strand, within SO2476at 2598.000 kb on + strand, within SO2476at 2598.120 kb on + strandat 2598.120 kb on + strandat 2598.159 kb on + strandat 2598.282 kb on - strandat 2598.289 kb on + strandat 2598.289 kb on + strandat 2598.297 kb on - strandat 2598.297 kb on - strandat 2598.457 kb on - strand, within SO2477at 2598.603 kb on + strand, within SO2477at 2598.794 kb on - strand, within SO2477at 2598.849 kb on - strand, within SO2477at 2598.857 kb on + strand, within SO2477at 2598.982 kb on + strand, within SO2477at 2598.996 kb on + strand, within SO2477at 2599.002 kb on - strand, within SO2477at 2600.170 kb on + strand, within SO2479at 2600.250 kb on + strand, within SO2479

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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2,597,335 + SO2476 0.29 -6.1
2,597,358 - SO2476 0.30 -3.0
2,597,374 + SO2476 0.32 -2.3
2,597,650 + SO2476 0.55 -4.0
2,597,719 + SO2476 0.61 -4.4
2,597,871 - SO2476 0.74 -2.8
2,597,905 - SO2476 0.77 -3.5
2,598,000 + SO2476 0.85 -3.3
2,598,000 + SO2476 0.85 -3.4
2,598,120 + -3.7
2,598,120 + -4.1
2,598,159 + -2.4
2,598,282 - -3.5
2,598,289 + -4.4
2,598,289 + -2.3
2,598,297 - -4.9
2,598,297 - -3.4
2,598,457 - SO2477 0.24 -5.5
2,598,603 + SO2477 0.37 -2.3
2,598,794 - SO2477 0.55 -2.7
2,598,849 - SO2477 0.60 -3.7
2,598,857 + SO2477 0.61 -5.8
2,598,982 + SO2477 0.73 -2.8
2,598,996 + SO2477 0.74 -2.5
2,599,002 - SO2477 0.75 -3.1
2,600,170 + SO2479 0.20 +0.3
2,600,250 + SO2479 0.54 -1.1

Or see this region's nucleotide sequence