Strain Fitness in Shewanella oneidensis MR-1 around SO2074

Experiment: Fusidic 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.125 mg/ml
2,169,960	-	hisD	SO2073	0.25	+1.0
2,170,143	-	hisD	SO2073	0.39	+0.1
2,170,148	-	hisD	SO2073	0.39	+0.5
2,170,173	+				-0.2
2,170,208	+	hisD	SO2073	0.44	+0.1
2,170,216	-	hisD	SO2073	0.44	-0.7
2,170,254	-	hisD	SO2073	0.47	-0.2
2,170,370	-	hisD	SO2073	0.56	+0.2
2,170,476	-	hisD	SO2073	0.64	-0.5
2,170,496	+	hisD	SO2073	0.66	+0.3
2,170,510	-	hisD	SO2073	0.67	+0.7
2,170,771	+	hisD	SO2073	0.86	+0.4
2,170,885	-				-0.3
2,170,984	+				+0.6
2,171,004	+				-0.3
2,171,014	+				-0.2
2,171,014	+				-0.5
2,171,046	-				-1.1
2,171,207	+	hisG	SO2074	0.26	+0.3
2,171,257	-	hisG	SO2074	0.31	+0.0
2,171,293	+	hisG	SO2074	0.35	+0.3
2,171,360	+	hisG	SO2074	0.42	+0.3
2,171,526	+	hisG	SO2074	0.59	-0.1
2,171,534	-	hisG	SO2074	0.60	-0.2
2,171,595	-	hisG	SO2074	0.66	-0.3
2,171,785	+	hisG	SO2074	0.85	-1.3
2,171,862	+				-1.2
2,172,043	+				+1.4
2,172,128	-				-0.5
2,172,163	-				-0.1
2,172,204	-				-0.0
2,172,281	-				-0.2
2,172,436	-				+0.1
2,172,461	+				-0.4
2,172,461	+				-0.8
2,172,467	+				-0.4
2,172,467	+				-0.3
2,172,467	+				+1.5
2,172,467	+				+0.2
2,172,467	+				-0.8
2,172,467	+				+0.3
2,172,469	+				-0.1
2,172,469	-				-0.1
2,172,475	-				+0.1
2,172,475	-				+0.1
2,172,510	+				-1.0
2,172,539	+				+0.2
2,172,548	-				+0.6
2,172,570	-				+0.7
2,172,577	+				-0.3
2,172,585	-				+0.6
2,172,615	+		SO2075	0.12	+0.8
2,172,618	-		SO2075	0.13	-0.4
2,172,696	-		SO2075	0.22	-0.5
2,172,711	+		SO2075	0.24	+0.4
2,172,730	+		SO2075	0.26	+0.3
2,172,736	+		SO2075	0.27	+0.3
2,172,738	-		SO2075	0.27	-0.6
2,172,749	+		SO2075	0.29	-0.8
2,172,749	+		SO2075	0.29	-0.1
2,172,749	+		SO2075	0.29	+0.2
2,172,749	+		SO2075	0.29	+0.2
2,172,749	+		SO2075	0.29	-0.3
2,172,749	+		SO2075	0.29	-0.0
2,172,749	+		SO2075	0.29	+0.0
2,172,749	+		SO2075	0.29	+0.2
2,172,749	+		SO2075	0.29	-0.4
2,172,749	+		SO2075	0.29	+0.9
2,172,749	+		SO2075	0.29	-0.3
2,172,749	+		SO2075	0.29	-2.5
2,172,749	+		SO2075	0.29	-0.2
2,172,749	+		SO2075	0.29	+0.3
2,172,749	+		SO2075	0.29	-1.3
2,172,749	+		SO2075	0.29	-0.6
2,172,749	+		SO2075	0.29	+0.2
2,172,749	+		SO2075	0.29	-0.2
2,172,749	+		SO2075	0.29	+0.4
2,172,749	+		SO2075	0.29	+0.4
2,172,749	+		SO2075	0.29	-0.7
2,172,749	+		SO2075	0.29	-0.2
2,172,749	+		SO2075	0.29	-1.3
2,172,749	+		SO2075	0.29	+0.2
2,172,749	+		SO2075	0.29	-1.3
2,172,749	+		SO2075	0.29	+0.5
2,172,749	+		SO2075	0.29	+0.0
2,172,749	+		SO2075	0.29	-0.0
2,172,749	+		SO2075	0.29	-0.5
2,172,749	+		SO2075	0.29	-0.1
2,172,749	+		SO2075	0.29	+0.4
2,172,749	+		SO2075	0.29	+0.1
2,172,749	+		SO2075	0.29	+0.2
2,172,749	+		SO2075	0.29	+0.1
2,172,752	-		SO2075	0.29	+0.3
2,172,757	-		SO2075	0.29	+0.9
2,172,757	-		SO2075	0.29	+0.2
2,172,757	-		SO2075	0.29	+0.1
2,172,757	-		SO2075	0.29	+0.4
2,172,757	-		SO2075	0.29	-0.6
2,172,757	-		SO2075	0.29	+0.5
2,172,757	-		SO2075	0.29	+0.0
2,172,757	-		SO2075	0.29	+0.1
2,172,757	-		SO2075	0.29	+0.1
2,172,757	-		SO2075	0.29	+0.3
2,172,757	-		SO2075	0.29	+0.8
2,172,757	-		SO2075	0.29	+0.5
2,172,757	-		SO2075	0.29	-0.5
2,172,757	-		SO2075	0.29	+0.2
2,172,757	-		SO2075	0.29	+1.1
2,172,757	-		SO2075	0.29	+0.3
2,172,757	-		SO2075	0.29	-0.3
2,172,757	-		SO2075	0.29	+0.2
2,172,757	-		SO2075	0.29	-0.0
2,172,757	-		SO2075	0.29	-0.2
2,172,757	-		SO2075	0.29	-0.9
2,172,757	-		SO2075	0.29	+0.4
2,172,757	-		SO2075	0.29	+0.5
2,172,757	-		SO2075	0.29	+0.4
2,172,757	-		SO2075	0.29	-0.4
2,172,757	-		SO2075	0.29	+0.0
2,172,757	-		SO2075	0.29	+0.1
2,172,757	-		SO2075	0.29	-0.3
2,172,757	-		SO2075	0.29	-0.5
2,172,757	-		SO2075	0.29	-0.7
2,172,757	-		SO2075	0.29	+0.0
2,172,757	-		SO2075	0.29	-0.3
2,172,757	-		SO2075	0.29	+0.2
2,172,757	-		SO2075	0.29	-0.6
2,172,757	-		SO2075	0.29	+0.1
2,172,757	-		SO2075	0.29	-0.9
2,172,779	+		SO2075	0.32	+1.0
2,172,779	+		SO2075	0.32	+0.2
2,172,779	+		SO2075	0.32	-0.4
2,172,779	+		SO2075	0.32	+0.0
2,172,779	+		SO2075	0.32	+0.6
2,172,787	-		SO2075	0.33	+0.1
2,172,787	-		SO2075	0.33	-0.1
2,172,787	-		SO2075	0.33	+0.1
2,172,787	-		SO2075	0.33	+1.0
2,172,787	-		SO2075	0.33	-0.5
2,172,787	-		SO2075	0.33	-0.7
2,172,787	-		SO2075	0.33	-0.0
2,172,793	+		SO2075	0.34	-0.7
2,172,810	-		SO2075	0.36	-0.1
2,172,890	-		SO2075	0.46	+0.0
2,172,896	+		SO2075	0.46	+0.1
2,172,920	-		SO2075	0.49	-0.2