Strain Fitness in Shewanella oneidensis MR-1 around SO1945

Experiment: Fusidic 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.125 mg/ml
2,046,855	+				+0.4
2,046,871	-				-0.8
2,047,103	-				+0.7
2,047,184	+		SO1944	0.16	+0.8
2,047,191	-		SO1944	0.17	-0.3
2,047,246	-		SO1944	0.25	-0.4
2,047,365	-		SO1944	0.42	+0.1
2,047,366	-		SO1944	0.42	-0.4
2,047,366	-		SO1944	0.42	+0.9
2,047,370	+		SO1944	0.42	+0.3
2,047,370	+		SO1944	0.42	+0.1
2,047,378	-		SO1944	0.44	+0.1
2,047,378	-		SO1944	0.44	-0.5
2,047,378	-		SO1944	0.44	+0.3
2,047,378	-		SO1944	0.44	+0.2
2,047,404	+		SO1944	0.47	+0.1
2,047,404	+		SO1944	0.47	-0.6
2,047,404	+		SO1944	0.47	+0.2
2,047,404	+		SO1944	0.47	+0.1
2,047,404	+		SO1944	0.47	-0.0
2,047,412	-		SO1944	0.48	-0.2
2,047,412	-		SO1944	0.48	+0.4
2,047,412	-		SO1944	0.48	+0.0
2,047,534	+		SO1944	0.66	-0.0
2,047,534	+		SO1944	0.66	+0.2
2,047,542	-		SO1944	0.67	+0.0
2,047,542	-		SO1944	0.67	+0.0
2,047,542	-		SO1944	0.67	+0.4
2,047,669	-		SO1944	0.85	+0.4
2,047,757	-				-0.5
2,047,871	+				-2.1
2,048,213	+	phoQ	SO1945	0.32	-2.0
2,048,215	-	phoQ	SO1945	0.33	-0.8
2,048,379	-	phoQ	SO1945	0.45	-1.8
2,048,424	-	phoQ	SO1945	0.48	-0.2
2,048,446	-	phoQ	SO1945	0.50	-1.3
2,048,452	-	phoQ	SO1945	0.50	-1.5
2,048,459	-	phoQ	SO1945	0.51	-0.2
2,048,574	-	phoQ	SO1945	0.59	-1.3
2,048,619	+	phoQ	SO1945	0.62	-0.6
2,049,336	-	phoP	SO1946	0.33	-1.9
2,049,427	+	phoP	SO1946	0.46	-2.2
2,049,437	+	phoP	SO1946	0.48	-1.5
2,049,514	+	phoP	SO1946	0.59	-1.1
2,049,559	+	phoP	SO1946	0.66	-1.2
2,049,601	+	phoP	SO1946	0.72	-2.3
2,049,709	+	phoP	SO1946	0.88	-2.4
2,049,824	-				+0.5
2,049,908	-				-0.7
2,050,057	+		SO1947	0.25	-0.6
2,050,057	+		SO1947	0.25	+1.7
2,050,067	+		SO1947	0.28	+0.7