Strain Fitness in Shewanella oneidensis MR-1 around SO1070

Experiment: Fusidic 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.125 mg/ml
1,109,005	+		SO1068	0.39	-1.3
1,109,025	+		SO1068	0.43	-0.4
1,109,210	+		SO1068	0.85	-0.6
1,109,218	+		SO1068	0.87	+0.6
1,109,231	-				+0.4
1,109,285	-				-0.1
1,109,324	+				-0.9
1,109,324	+				+0.4
1,109,324	+				-0.1
1,109,473	+		SO1069	0.59	-0.2
1,109,744	+				+0.7
1,109,770	+				+0.4
1,109,780	+				-0.2
1,109,788	-				+0.3
1,109,908	-				-0.8
1,109,922	-				-1.3
1,109,977	+				-1.6
1,109,985	-				-1.5
1,109,985	-				-1.2
1,109,985	-				-2.0
1,109,985	-				-1.0
1,109,985	-				-0.6
1,110,000	-				-1.1
1,110,126	-				-1.2
1,110,132	+	katB	SO1070	0.10	-0.2
1,110,142	+	katB	SO1070	0.11	-1.1
1,110,186	-	katB	SO1070	0.14	-0.7
1,110,199	+	katB	SO1070	0.15	-0.9
1,110,214	+	katB	SO1070	0.16	-0.7
1,110,214	+	katB	SO1070	0.16	-0.7
1,110,222	-	katB	SO1070	0.16	-0.8
1,110,222	-	katB	SO1070	0.16	-2.1
1,110,222	-	katB	SO1070	0.16	-1.3
1,110,222	-	katB	SO1070	0.16	-1.2
1,110,330	-	katB	SO1070	0.24	-1.1
1,110,442	+	katB	SO1070	0.32	-0.2
1,110,551	-	katB	SO1070	0.39	-0.3
1,110,558	+	katB	SO1070	0.39	+1.7
1,110,566	-	katB	SO1070	0.40	-1.2
1,110,566	-	katB	SO1070	0.40	-1.0
1,110,647	+	katB	SO1070	0.46	-1.2
1,110,681	-	katB	SO1070	0.48	-0.6
1,110,687	+	katB	SO1070	0.48	-0.6
1,110,728	+	katB	SO1070	0.51	-1.0
1,110,763	+	katB	SO1070	0.54	-1.9
1,110,828	-	katB	SO1070	0.58	-2.1
1,110,860	+	katB	SO1070	0.60	-2.3
1,110,915	+	katB	SO1070	0.64	-0.1
1,110,930	+	katB	SO1070	0.65	-0.8
1,110,930	+	katB	SO1070	0.65	-0.9
1,110,930	+	katB	SO1070	0.65	-1.1
1,110,938	-	katB	SO1070	0.66	-2.3
1,110,941	+	katB	SO1070	0.66	-0.7
1,110,949	-	katB	SO1070	0.66	-0.5
1,111,045	-	katB	SO1070	0.73	-0.7
1,111,107	+	katB	SO1070	0.77	-0.7
1,111,243	-	katB	SO1070	0.86	-1.7
1,111,285	-	katB	SO1070	0.89	-2.9
1,111,434	+				+0.4
1,111,456	-				-0.2
1,111,540	+				-0.1
1,111,540	+				+0.7
1,111,548	-				+0.3
1,111,559	+				+0.0
1,111,569	+				+0.1
1,111,577	-				+0.5
1,111,577	-				+1.2
1,111,611	-		SO1071	0.15	+0.5
1,111,671	+		SO1071	0.25	-0.3
1,111,752	-		SO1071	0.39	+0.2
1,111,754	+		SO1071	0.39	+0.9
1,111,762	-		SO1071	0.41	+1.0
1,111,837	-		SO1071	0.53	-1.4
1,111,877	+		SO1071	0.60	+1.6
1,111,877	+		SO1071	0.60	+1.3
1,111,882	+		SO1071	0.61	+0.5
1,111,885	-		SO1071	0.61	+0.9
1,111,885	-		SO1071	0.61	+0.7
1,112,093	-				-0.2
1,112,310	-				+0.3
1,112,318	+				-1.0