Experiment: Fusidic 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0572 and SO0573 are separated by 135 nucleotides SO0573 and hepA are separated by 261 nucleotides
SO0572: SO0572 - enoyl-CoA hydratase/isomerase family protein (NCBI ptt file), at 592,180 to 592,986
SO0572
SO0573: SO0573 - hypothetical protein (NCBI ptt file), at 593,122 to 594,018
SO0573
SO0575: hepA - RNA polymerase-associated protein HepA (NCBI ptt file), at 594,280 to 597,186
hepA
Position (kb) 593
594
595 Strain fitness (log2 ratio) -1
0
1 at 592.176 kb on + strand at 592.176 kb on + strand at 592.191 kb on - strand at 592.203 kb on - strand at 592.466 kb on + strand, within SO0572 at 592.481 kb on + strand, within SO0572 at 592.506 kb on + strand, within SO0572 at 592.513 kb on + strand, within SO0572 at 592.577 kb on + strand, within SO0572 at 592.713 kb on + strand, within SO0572 at 592.713 kb on + strand, within SO0572 at 592.721 kb on - strand, within SO0572 at 592.748 kb on - strand, within SO0572 at 592.749 kb on - strand, within SO0572 at 592.796 kb on - strand, within SO0572 at 592.849 kb on + strand, within SO0572 at 592.859 kb on + strand, within SO0572 at 592.957 kb on - strand at 593.055 kb on + strand at 593.063 kb on - strand at 593.063 kb on - strand at 593.113 kb on + strand at 593.121 kb on - strand at 593.473 kb on - strand, within SO0573 at 593.483 kb on - strand, within SO0573 at 593.499 kb on + strand, within SO0573 at 593.501 kb on - strand, within SO0573 at 593.559 kb on + strand, within SO0573 at 593.694 kb on + strand, within SO0573 at 593.785 kb on + strand, within SO0573 at 593.785 kb on + strand, within SO0573 at 593.793 kb on - strand, within SO0573 at 593.816 kb on + strand, within SO0573 at 593.835 kb on - strand, within SO0573 at 593.910 kb on + strand, within SO0573 at 593.910 kb on + strand, within SO0573 at 593.918 kb on + strand, within SO0573 at 593.918 kb on - strand, within SO0573 at 593.939 kb on + strand at 593.947 kb on - strand at 593.947 kb on - strand at 593.980 kb on - strand at 593.988 kb on + strand at 593.996 kb on - strand at 594.012 kb on - strand at 594.016 kb on + strand at 594.253 kb on - strand at 594.253 kb on - strand at 594.261 kb on + strand at 594.285 kb on - strand at 594.317 kb on + strand at 594.420 kb on + strand at 594.421 kb on + strand at 594.448 kb on - strand at 594.494 kb on - strand at 594.508 kb on + strand at 594.510 kb on - strand at 594.516 kb on - strand at 594.551 kb on + strand at 594.925 kb on - strand, within hepA at 594.927 kb on + strand, within hepA
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml remove 592,176 + -0.2 592,176 + +0.8 592,191 - +0.0 592,203 - +0.0 592,466 + SO0572 0.35 -0.0 592,481 + SO0572 0.37 -0.3 592,506 + SO0572 0.40 -0.3 592,513 + SO0572 0.41 +0.1 592,577 + SO0572 0.49 -0.1 592,713 + SO0572 0.66 +0.3 592,713 + SO0572 0.66 -0.0 592,721 - SO0572 0.67 -0.1 592,748 - SO0572 0.70 +0.8 592,749 - SO0572 0.71 +0.2 592,796 - SO0572 0.76 +1.2 592,849 + SO0572 0.83 -0.2 592,859 + SO0572 0.84 -0.8 592,957 - -0.4 593,055 + +0.1 593,063 - -0.2 593,063 - +0.0 593,113 + -0.4 593,121 - +0.6 593,473 - SO0573 0.39 +0.3 593,483 - SO0573 0.40 +0.4 593,499 + SO0573 0.42 +0.6 593,501 - SO0573 0.42 -0.2 593,559 + SO0573 0.49 +0.2 593,694 + SO0573 0.64 -0.6 593,785 + SO0573 0.74 -0.0 593,785 + SO0573 0.74 -0.2 593,793 - SO0573 0.75 +0.0 593,816 + SO0573 0.77 -0.0 593,835 - SO0573 0.79 +0.8 593,910 + SO0573 0.88 +0.0 593,910 + SO0573 0.88 +0.4 593,918 + SO0573 0.89 -0.8 593,918 - SO0573 0.89 +0.9 593,939 + +0.4 593,947 - -0.4 593,947 - +0.4 593,980 - -0.0 593,988 + +0.7 593,996 - +0.2 594,012 - -0.2 594,016 + +1.1 594,253 - +0.7 594,253 - -1.6 594,261 + +1.2 594,285 - +1.1 594,317 + +0.3 594,420 + +0.1 594,421 + +0.3 594,448 - +0.8 594,494 - +0.3 594,508 + +1.0 594,510 - -0.0 594,516 - +0.3 594,551 + +0.4 594,925 - hepA SO0575 0.22 +0.4 594,927 + hepA SO0575 0.22 +0.6
Or see this region's nucleotide sequence