Experiment: Fusidic 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0535 and SO0536 are separated by 9 nucleotides SO0536 and gapA-1 are separated by 190 nucleotides gapA-1 and SO0539 are separated by 9 nucleotides
SO0535: SO0535 - conserved hypothetical protein (NCBI ptt file), at 555,873 to 556,868
SO0535
SO0536: SO0536 - redox-active disulfide protein 2 (NCBI ptt file), at 556,878 to 557,114
SO0536
SO0538: gapA-1 - glyceraldehyde 3-phosphate dehydrogenase (NCBI ptt file), at 557,305 to 558,318
gapA-1
SO0539: SO0539 - transporter, putative (NCBI ptt file), at 558,328 to 559,590
SO0539
Position (kb) 557
558
559 Strain fitness (log2 ratio) -1
0
1
2 at 556.308 kb on - strand, within SO0535 at 556.308 kb on - strand, within SO0535 at 556.308 kb on - strand, within SO0535 at 556.364 kb on + strand, within SO0535 at 556.374 kb on + strand, within SO0535 at 556.413 kb on + strand, within SO0535 at 556.421 kb on + strand, within SO0535 at 556.436 kb on + strand, within SO0535 at 556.444 kb on - strand, within SO0535 at 556.522 kb on + strand, within SO0535 at 556.522 kb on + strand, within SO0535 at 556.527 kb on + strand, within SO0535 at 556.534 kb on + strand, within SO0535 at 556.547 kb on - strand, within SO0535 at 556.552 kb on - strand, within SO0535 at 556.584 kb on + strand, within SO0535 at 556.584 kb on + strand, within SO0535 at 556.586 kb on - strand, within SO0535 at 556.590 kb on + strand, within SO0535 at 556.590 kb on + strand, within SO0535 at 556.635 kb on - strand, within SO0535 at 556.729 kb on + strand, within SO0535 at 556.796 kb on + strand at 556.804 kb on - strand at 556.804 kb on - strand at 557.054 kb on + strand, within SO0536 at 557.054 kb on + strand, within SO0536 at 557.068 kb on + strand, within SO0536 at 557.068 kb on + strand, within SO0536 at 557.068 kb on + strand, within SO0536 at 557.068 kb on + strand, within SO0536 at 557.076 kb on - strand, within SO0536 at 557.076 kb on - strand, within SO0536 at 557.076 kb on - strand, within SO0536 at 557.145 kb on + strand at 557.153 kb on - strand at 557.153 kb on - strand at 557.348 kb on + strand at 557.348 kb on + strand at 557.348 kb on + strand at 557.348 kb on + strand at 557.348 kb on + strand at 557.356 kb on - strand at 557.356 kb on - strand at 557.356 kb on - strand at 557.356 kb on - strand at 557.356 kb on - strand at 557.356 kb on - strand at 557.358 kb on + strand at 557.477 kb on - strand, within gapA-1 at 557.477 kb on - strand, within gapA-1 at 557.543 kb on - strand, within gapA-1 at 557.574 kb on - strand, within gapA-1 at 557.695 kb on + strand, within gapA-1 at 557.884 kb on + strand, within gapA-1 at 557.884 kb on + strand, within gapA-1 at 557.884 kb on + strand, within gapA-1 at 557.884 kb on + strand, within gapA-1 at 557.884 kb on + strand, within gapA-1 at 557.892 kb on - strand, within gapA-1 at 557.892 kb on - strand, within gapA-1 at 557.892 kb on - strand, within gapA-1 at 557.915 kb on + strand, within gapA-1 at 557.923 kb on - strand, within gapA-1 at 557.971 kb on - strand, within gapA-1 at 557.982 kb on + strand, within gapA-1 at 557.990 kb on - strand, within gapA-1 at 558.012 kb on + strand, within gapA-1 at 558.110 kb on - strand, within gapA-1 at 558.215 kb on - strand, within gapA-1 at 558.352 kb on - strand at 558.436 kb on + strand at 558.601 kb on - strand, within SO0539 at 558.650 kb on - strand, within SO0539 at 558.675 kb on + strand, within SO0539 at 558.756 kb on + strand, within SO0539 at 558.784 kb on - strand, within SO0539 at 558.798 kb on + strand, within SO0539 at 558.826 kb on - strand, within SO0539 at 558.921 kb on + strand, within SO0539 at 558.934 kb on - strand, within SO0539 at 558.934 kb on - strand, within SO0539 at 558.934 kb on - strand, within SO0539 at 559.115 kb on - strand, within SO0539 at 559.159 kb on + strand, within SO0539 at 559.167 kb on - strand, within SO0539 at 559.167 kb on - strand, within SO0539 at 559.230 kb on - strand, within SO0539
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml remove 556,308 - SO0535 0.44 +0.3 556,308 - SO0535 0.44 +0.0 556,308 - SO0535 0.44 -0.2 556,364 + SO0535 0.49 +2.2 556,374 + SO0535 0.50 -0.9 556,413 + SO0535 0.54 +0.5 556,421 + SO0535 0.55 -0.4 556,436 + SO0535 0.57 +0.3 556,444 - SO0535 0.57 -0.5 556,522 + SO0535 0.65 +0.3 556,522 + SO0535 0.65 +0.8 556,527 + SO0535 0.66 +0.3 556,534 + SO0535 0.66 -0.0 556,547 - SO0535 0.68 -0.1 556,552 - SO0535 0.68 +0.4 556,584 + SO0535 0.71 -0.3 556,584 + SO0535 0.71 +0.2 556,586 - SO0535 0.72 +0.2 556,590 + SO0535 0.72 -0.1 556,590 + SO0535 0.72 +0.9 556,635 - SO0535 0.77 +0.2 556,729 + SO0535 0.86 +0.2 556,796 + -0.2 556,804 - -0.4 556,804 - -0.0 557,054 + SO0536 0.74 -1.5 557,054 + SO0536 0.74 +0.2 557,068 + SO0536 0.80 -0.2 557,068 + SO0536 0.80 -0.4 557,068 + SO0536 0.80 +0.8 557,068 + SO0536 0.80 +0.3 557,076 - SO0536 0.84 -0.2 557,076 - SO0536 0.84 +0.2 557,076 - SO0536 0.84 -0.9 557,145 + +0.4 557,153 - +0.1 557,153 - +0.0 557,348 + +0.4 557,348 + -0.2 557,348 + +0.5 557,348 + -0.1 557,348 + -0.1 557,356 - +0.1 557,356 - +1.2 557,356 - -0.0 557,356 - +0.8 557,356 - -0.4 557,356 - -0.0 557,358 + +0.1 557,477 - gapA-1 SO0538 0.17 +1.0 557,477 - gapA-1 SO0538 0.17 -0.2 557,543 - gapA-1 SO0538 0.23 -0.4 557,574 - gapA-1 SO0538 0.27 +0.4 557,695 + gapA-1 SO0538 0.38 -0.2 557,884 + gapA-1 SO0538 0.57 -0.4 557,884 + gapA-1 SO0538 0.57 -0.5 557,884 + gapA-1 SO0538 0.57 -0.6 557,884 + gapA-1 SO0538 0.57 -0.4 557,884 + gapA-1 SO0538 0.57 -0.4 557,892 - gapA-1 SO0538 0.58 +0.5 557,892 - gapA-1 SO0538 0.58 +0.5 557,892 - gapA-1 SO0538 0.58 -1.2 557,915 + gapA-1 SO0538 0.60 -0.4 557,923 - gapA-1 SO0538 0.61 -0.5 557,971 - gapA-1 SO0538 0.66 -0.8 557,982 + gapA-1 SO0538 0.67 -0.8 557,990 - gapA-1 SO0538 0.68 -0.6 558,012 + gapA-1 SO0538 0.70 -0.5 558,110 - gapA-1 SO0538 0.79 -0.1 558,215 - gapA-1 SO0538 0.90 -0.6 558,352 - +1.2 558,436 + -0.3 558,601 - SO0539 0.22 +0.4 558,650 - SO0539 0.25 -0.8 558,675 + SO0539 0.27 -0.1 558,756 + SO0539 0.34 -0.1 558,784 - SO0539 0.36 -0.8 558,798 + SO0539 0.37 -0.2 558,826 - SO0539 0.39 +0.5 558,921 + SO0539 0.47 -0.5 558,934 - SO0539 0.48 +0.3 558,934 - SO0539 0.48 +1.1 558,934 - SO0539 0.48 -0.6 559,115 - SO0539 0.62 -0.1 559,159 + SO0539 0.66 -0.3 559,167 - SO0539 0.66 -0.3 559,167 - SO0539 0.66 -0.6 559,230 - SO0539 0.71 +0.1
Or see this region's nucleotide sequence