Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08880

Experiment: m.b. Gentamicin 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c08870 and PGA1_c08880 are separated by 44 nucleotidesPGA1_c08880 and PGA1_c08890 are separated by 4 nucleotides PGA1_c08870: PGA1_c08870 - riboflavin biosynthesis protein RibD, at 915,163 to 916,239 _c08870 PGA1_c08880: PGA1_c08880 - capsule polysaccharide export protein KpsC, at 916,284 to 918,314 _c08880 PGA1_c08890: PGA1_c08890 - putative capsule polysaccharide export outer membrane protein, at 918,319 to 919,455 _c08890 Position (kb) 916 917 918 919Strain fitness (log2 ratio) -2 -1 0 1 2 3at 916.265 kb on - strandat 916.267 kb on + strandat 916.295 kb on + strandat 916.298 kb on + strandat 916.300 kb on + strandat 916.325 kb on - strandat 916.368 kb on + strandat 916.369 kb on + strandat 916.424 kb on + strandat 916.424 kb on + strandat 916.427 kb on - strandat 916.428 kb on + strandat 916.432 kb on - strandat 916.492 kb on + strand, within PGA1_c08880at 916.520 kb on - strand, within PGA1_c08880at 916.540 kb on + strand, within PGA1_c08880at 916.548 kb on - strand, within PGA1_c08880at 916.561 kb on + strand, within PGA1_c08880at 916.567 kb on + strand, within PGA1_c08880at 916.568 kb on + strand, within PGA1_c08880at 916.568 kb on + strand, within PGA1_c08880at 916.568 kb on + strand, within PGA1_c08880at 916.576 kb on - strand, within PGA1_c08880at 916.583 kb on + strand, within PGA1_c08880at 916.728 kb on + strand, within PGA1_c08880at 916.743 kb on + strand, within PGA1_c08880at 916.845 kb on - strand, within PGA1_c08880at 916.881 kb on + strand, within PGA1_c08880at 916.881 kb on + strand, within PGA1_c08880at 916.881 kb on + strand, within PGA1_c08880at 916.881 kb on + strand, within PGA1_c08880at 916.889 kb on - strand, within PGA1_c08880at 916.889 kb on - strand, within PGA1_c08880at 916.899 kb on - strand, within PGA1_c08880at 916.928 kb on - strand, within PGA1_c08880at 917.053 kb on + strand, within PGA1_c08880at 917.143 kb on + strand, within PGA1_c08880at 917.146 kb on - strand, within PGA1_c08880at 917.148 kb on + strand, within PGA1_c08880at 917.158 kb on + strand, within PGA1_c08880at 917.166 kb on - strand, within PGA1_c08880at 917.195 kb on + strand, within PGA1_c08880at 917.203 kb on - strand, within PGA1_c08880at 917.387 kb on - strand, within PGA1_c08880at 917.415 kb on - strand, within PGA1_c08880at 917.475 kb on + strand, within PGA1_c08880at 917.483 kb on - strand, within PGA1_c08880at 917.496 kb on - strand, within PGA1_c08880at 917.531 kb on - strand, within PGA1_c08880at 917.563 kb on - strand, within PGA1_c08880at 917.580 kb on + strand, within PGA1_c08880at 917.598 kb on - strand, within PGA1_c08880at 917.631 kb on - strand, within PGA1_c08880at 917.692 kb on - strand, within PGA1_c08880at 917.776 kb on - strand, within PGA1_c08880at 917.798 kb on - strand, within PGA1_c08880at 917.840 kb on - strand, within PGA1_c08880at 917.882 kb on + strand, within PGA1_c08880at 917.885 kb on - strand, within PGA1_c08880at 917.898 kb on - strand, within PGA1_c08880at 917.974 kb on - strand, within PGA1_c08880at 917.981 kb on + strand, within PGA1_c08880at 917.989 kb on - strand, within PGA1_c08880at 918.002 kb on + strand, within PGA1_c08880at 918.094 kb on + strand, within PGA1_c08880at 918.099 kb on + strand, within PGA1_c08880at 918.100 kb on - strand, within PGA1_c08880at 918.131 kb on - strandat 918.142 kb on + strandat 918.147 kb on + strandat 918.147 kb on + strandat 918.155 kb on - strandat 918.186 kb on - strandat 918.194 kb on + strandat 918.194 kb on + strandat 918.196 kb on - strandat 918.202 kb on - strandat 918.202 kb on - strandat 918.202 kb on - strandat 918.202 kb on - strandat 918.280 kb on + strandat 918.288 kb on - strandat 918.315 kb on - strandat 918.331 kb on + strandat 918.396 kb on + strandat 918.458 kb on + strand, within PGA1_c08890at 918.466 kb on - strand, within PGA1_c08890at 918.502 kb on - strand, within PGA1_c08890at 918.525 kb on - strand, within PGA1_c08890at 918.607 kb on + strand, within PGA1_c08890at 918.610 kb on - strand, within PGA1_c08890at 918.699 kb on + strand, within PGA1_c08890at 918.712 kb on + strand, within PGA1_c08890at 918.765 kb on - strand, within PGA1_c08890at 919.092 kb on + strand, within PGA1_c08890at 919.095 kb on - strand, within PGA1_c08890at 919.100 kb on - strand, within PGA1_c08890at 919.194 kb on - strand, within PGA1_c08890at 919.220 kb on - strand, within PGA1_c08890

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.002 mg/ml
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916,265 - +0.4
916,267 + +0.7
916,295 + -0.4
916,298 + -0.8
916,300 + +2.4
916,325 - -1.4
916,368 + -0.5
916,369 + -2.4
916,424 + +1.8
916,424 + +0.1
916,427 - +0.1
916,428 + -1.4
916,432 - +0.3
916,492 + PGA1_c08880 0.10 -1.1
916,520 - PGA1_c08880 0.12 -1.2
916,540 + PGA1_c08880 0.13 -1.2
916,548 - PGA1_c08880 0.13 -0.8
916,561 + PGA1_c08880 0.14 -2.1
916,567 + PGA1_c08880 0.14 +0.1
916,568 + PGA1_c08880 0.14 -1.2
916,568 + PGA1_c08880 0.14 -1.2
916,568 + PGA1_c08880 0.14 -0.9
916,576 - PGA1_c08880 0.14 +2.3
916,583 + PGA1_c08880 0.15 -1.9
916,728 + PGA1_c08880 0.22 -0.8
916,743 + PGA1_c08880 0.23 -0.4
916,845 - PGA1_c08880 0.28 -1.1
916,881 + PGA1_c08880 0.29 +0.5
916,881 + PGA1_c08880 0.29 -0.2
916,881 + PGA1_c08880 0.29 -0.2
916,881 + PGA1_c08880 0.29 -2.6
916,889 - PGA1_c08880 0.30 -2.5
916,889 - PGA1_c08880 0.30 +0.0
916,899 - PGA1_c08880 0.30 -1.3
916,928 - PGA1_c08880 0.32 -2.4
917,053 + PGA1_c08880 0.38 -0.3
917,143 + PGA1_c08880 0.42 -0.6
917,146 - PGA1_c08880 0.42 -2.0
917,148 + PGA1_c08880 0.43 -1.2
917,158 + PGA1_c08880 0.43 -1.4
917,166 - PGA1_c08880 0.43 -0.2
917,195 + PGA1_c08880 0.45 -2.6
917,203 - PGA1_c08880 0.45 +0.4
917,387 - PGA1_c08880 0.54 -0.7
917,415 - PGA1_c08880 0.56 +1.2
917,475 + PGA1_c08880 0.59 -0.9
917,483 - PGA1_c08880 0.59 -1.5
917,496 - PGA1_c08880 0.60 -0.7
917,531 - PGA1_c08880 0.61 -0.0
917,563 - PGA1_c08880 0.63 -0.2
917,580 + PGA1_c08880 0.64 +1.6
917,598 - PGA1_c08880 0.65 +1.6
917,631 - PGA1_c08880 0.66 -0.5
917,692 - PGA1_c08880 0.69 -1.3
917,776 - PGA1_c08880 0.73 -1.1
917,798 - PGA1_c08880 0.75 -1.1
917,840 - PGA1_c08880 0.77 -1.3
917,882 + PGA1_c08880 0.79 +0.1
917,885 - PGA1_c08880 0.79 -1.3
917,898 - PGA1_c08880 0.79 -1.5
917,974 - PGA1_c08880 0.83 -0.2
917,981 + PGA1_c08880 0.84 +0.8
917,989 - PGA1_c08880 0.84 -0.6
918,002 + PGA1_c08880 0.85 -1.4
918,094 + PGA1_c08880 0.89 -0.5
918,099 + PGA1_c08880 0.89 +0.0
918,100 - PGA1_c08880 0.89 -0.0
918,131 - -0.4
918,142 + -0.8
918,147 + -1.2
918,147 + -0.2
918,155 - -0.2
918,186 - -0.7
918,194 + -0.9
918,194 + -0.2
918,196 - -0.2
918,202 - +0.3
918,202 - +0.6
918,202 - -1.7
918,202 - -1.1
918,280 + -1.8
918,288 - +0.9
918,315 - -0.6
918,331 + +2.0
918,396 + +0.7
918,458 + PGA1_c08890 0.12 -1.1
918,466 - PGA1_c08890 0.13 -0.2
918,502 - PGA1_c08890 0.16 +3.5
918,525 - PGA1_c08890 0.18 -2.2
918,607 + PGA1_c08890 0.25 -0.9
918,610 - PGA1_c08890 0.26 +1.2
918,699 + PGA1_c08890 0.33 +1.1
918,712 + PGA1_c08890 0.35 -0.9
918,765 - PGA1_c08890 0.39 +0.1
919,092 + PGA1_c08890 0.68 -0.4
919,095 - PGA1_c08890 0.68 -0.8
919,100 - PGA1_c08890 0.69 +0.1
919,194 - PGA1_c08890 0.77 -1.6
919,220 - PGA1_c08890 0.79 -1.5

Or see this region's nucleotide sequence