Experiment: m.b. Gentamicin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08740 and PGA1_c08750 are separated by 304 nucleotides PGA1_c08750 and PGA1_c08755 are separated by 81 nucleotides PGA1_c08755 and PGA1_c08760 overlap by 1 nucleotides
PGA1_c08740: PGA1_c08740 - glutamate dehydrogenase GluD, at 900,052 to 901,482
_c08740
PGA1_c08750: PGA1_c08750 - sarcosine oxidase subunit beta, at 901,787 to 903,040
_c08750
PGA1_c08755: PGA1_c08755 - sarcosine oxidase subunit delta, at 903,122 to 903,382
_c08755
PGA1_c08760: PGA1_c08760 - sarcosine oxidase subunit alpha, at 903,382 to 906,303
_c08760
Position (kb) 901
902
903
904 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 901.476 kb on + strand at 901.484 kb on - strand at 901.484 kb on - strand at 901.487 kb on + strand at 901.571 kb on - strand at 901.594 kb on + strand at 901.665 kb on + strand at 901.665 kb on + strand at 901.670 kb on + strand at 901.689 kb on + strand at 901.699 kb on + strand at 901.720 kb on + strand at 901.728 kb on - strand at 901.811 kb on - strand at 901.828 kb on - strand at 901.860 kb on + strand at 901.891 kb on + strand at 901.907 kb on + strand at 901.916 kb on - strand, within PGA1_c08750 at 901.916 kb on - strand, within PGA1_c08750 at 901.943 kb on + strand, within PGA1_c08750 at 901.998 kb on + strand, within PGA1_c08750 at 902.011 kb on + strand, within PGA1_c08750 at 902.049 kb on + strand, within PGA1_c08750 at 902.049 kb on + strand, within PGA1_c08750 at 902.049 kb on + strand, within PGA1_c08750 at 902.056 kb on + strand, within PGA1_c08750 at 902.056 kb on + strand, within PGA1_c08750 at 902.077 kb on + strand, within PGA1_c08750 at 902.078 kb on - strand, within PGA1_c08750 at 902.085 kb on - strand, within PGA1_c08750 at 902.088 kb on + strand, within PGA1_c08750 at 902.088 kb on + strand, within PGA1_c08750 at 902.096 kb on - strand, within PGA1_c08750 at 902.096 kb on - strand, within PGA1_c08750 at 902.154 kb on + strand, within PGA1_c08750 at 902.164 kb on + strand, within PGA1_c08750 at 902.170 kb on - strand, within PGA1_c08750 at 902.172 kb on - strand, within PGA1_c08750 at 902.232 kb on + strand, within PGA1_c08750 at 902.260 kb on - strand, within PGA1_c08750 at 902.308 kb on + strand, within PGA1_c08750 at 902.308 kb on - strand, within PGA1_c08750 at 902.343 kb on + strand, within PGA1_c08750 at 902.361 kb on + strand, within PGA1_c08750 at 902.361 kb on + strand, within PGA1_c08750 at 902.376 kb on + strand, within PGA1_c08750 at 902.394 kb on + strand, within PGA1_c08750 at 902.440 kb on - strand, within PGA1_c08750 at 902.456 kb on + strand, within PGA1_c08750 at 902.456 kb on + strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.508 kb on - strand, within PGA1_c08750 at 902.525 kb on + strand, within PGA1_c08750 at 902.525 kb on + strand, within PGA1_c08750 at 902.533 kb on - strand, within PGA1_c08750 at 902.540 kb on + strand, within PGA1_c08750 at 902.577 kb on + strand, within PGA1_c08750 at 902.585 kb on - strand, within PGA1_c08750 at 902.645 kb on - strand, within PGA1_c08750 at 902.670 kb on + strand, within PGA1_c08750 at 902.670 kb on + strand, within PGA1_c08750 at 902.704 kb on - strand, within PGA1_c08750 at 902.856 kb on + strand, within PGA1_c08750 at 902.859 kb on - strand, within PGA1_c08750 at 902.909 kb on - strand, within PGA1_c08750 at 902.911 kb on + strand, within PGA1_c08750 at 902.911 kb on + strand, within PGA1_c08750 at 902.943 kb on - strand at 903.010 kb on + strand at 903.025 kb on + strand at 903.039 kb on + strand at 903.039 kb on + strand at 903.039 kb on + strand at 903.073 kb on + strand at 903.104 kb on + strand at 903.104 kb on + strand at 903.112 kb on - strand at 903.120 kb on - strand at 903.127 kb on - strand at 903.141 kb on + strand at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.213 kb on + strand, within PGA1_c08755 at 903.221 kb on - strand, within PGA1_c08755 at 903.221 kb on - strand, within PGA1_c08755 at 903.221 kb on - strand, within PGA1_c08755 at 903.221 kb on - strand, within PGA1_c08755 at 903.221 kb on - strand, within PGA1_c08755 at 903.247 kb on + strand, within PGA1_c08755 at 903.301 kb on - strand, within PGA1_c08755 at 903.595 kb on - strand at 903.619 kb on - strand at 903.624 kb on + strand at 903.632 kb on - strand at 903.697 kb on - strand, within PGA1_c08760 at 903.703 kb on + strand, within PGA1_c08760 at 903.754 kb on + strand, within PGA1_c08760 at 903.762 kb on - strand, within PGA1_c08760 at 903.762 kb on - strand, within PGA1_c08760 at 903.764 kb on + strand, within PGA1_c08760 at 903.772 kb on - strand, within PGA1_c08760 at 903.873 kb on - strand, within PGA1_c08760 at 903.873 kb on - strand, within PGA1_c08760 at 903.920 kb on - strand, within PGA1_c08760 at 903.952 kb on + strand, within PGA1_c08760 at 903.957 kb on - strand, within PGA1_c08760 at 904.000 kb on + strand, within PGA1_c08760 at 904.040 kb on - strand, within PGA1_c08760
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.002 mg/ml remove 901,476 + -0.5 901,484 - -0.6 901,484 - -0.5 901,487 + +1.2 901,571 - -0.4 901,594 + +0.6 901,665 + -0.0 901,665 + +0.4 901,670 + -0.8 901,689 + +1.7 901,699 + -0.2 901,720 + -1.2 901,728 - +1.5 901,811 - +1.7 901,828 - +0.2 901,860 + +0.4 901,891 + +0.2 901,907 + -1.8 901,916 - PGA1_c08750 0.10 -2.6 901,916 - PGA1_c08750 0.10 +1.0 901,943 + PGA1_c08750 0.12 -0.0 901,998 + PGA1_c08750 0.17 +2.0 902,011 + PGA1_c08750 0.18 +0.2 902,049 + PGA1_c08750 0.21 +0.6 902,049 + PGA1_c08750 0.21 +0.8 902,049 + PGA1_c08750 0.21 -2.1 902,056 + PGA1_c08750 0.21 -0.4 902,056 + PGA1_c08750 0.21 -0.2 902,077 + PGA1_c08750 0.23 -0.3 902,078 - PGA1_c08750 0.23 +0.1 902,085 - PGA1_c08750 0.24 -0.3 902,088 + PGA1_c08750 0.24 -2.2 902,088 + PGA1_c08750 0.24 +0.1 902,096 - PGA1_c08750 0.25 +0.9 902,096 - PGA1_c08750 0.25 +0.1 902,154 + PGA1_c08750 0.29 -2.2 902,164 + PGA1_c08750 0.30 +0.0 902,170 - PGA1_c08750 0.31 -2.0 902,172 - PGA1_c08750 0.31 +0.1 902,232 + PGA1_c08750 0.35 -0.5 902,260 - PGA1_c08750 0.38 -1.1 902,308 + PGA1_c08750 0.42 -0.8 902,308 - PGA1_c08750 0.42 -2.2 902,343 + PGA1_c08750 0.44 -0.3 902,361 + PGA1_c08750 0.46 +0.5 902,361 + PGA1_c08750 0.46 +0.3 902,376 + PGA1_c08750 0.47 +0.2 902,394 + PGA1_c08750 0.48 +0.7 902,440 - PGA1_c08750 0.52 -0.2 902,456 + PGA1_c08750 0.53 +0.3 902,456 + PGA1_c08750 0.53 -1.3 902,464 - PGA1_c08750 0.54 +0.3 902,464 - PGA1_c08750 0.54 -1.1 902,464 - PGA1_c08750 0.54 -3.3 902,464 - PGA1_c08750 0.54 -1.1 902,464 - PGA1_c08750 0.54 -0.6 902,464 - PGA1_c08750 0.54 +0.4 902,508 - PGA1_c08750 0.57 -0.1 902,525 + PGA1_c08750 0.59 -1.6 902,525 + PGA1_c08750 0.59 -0.0 902,533 - PGA1_c08750 0.59 +0.3 902,540 + PGA1_c08750 0.60 +0.5 902,577 + PGA1_c08750 0.63 -0.7 902,585 - PGA1_c08750 0.64 -1.8 902,645 - PGA1_c08750 0.68 -0.9 902,670 + PGA1_c08750 0.70 -1.2 902,670 + PGA1_c08750 0.70 +1.1 902,704 - PGA1_c08750 0.73 -0.1 902,856 + PGA1_c08750 0.85 +0.6 902,859 - PGA1_c08750 0.85 +0.8 902,909 - PGA1_c08750 0.89 -1.4 902,911 + PGA1_c08750 0.90 -0.8 902,911 + PGA1_c08750 0.90 +1.5 902,943 - -1.3 903,010 + -0.1 903,025 + +1.0 903,039 + -0.8 903,039 + -0.8 903,039 + -0.2 903,073 + -0.8 903,104 + -0.8 903,104 + -0.8 903,112 - +0.1 903,120 - +3.4 903,127 - -1.5 903,141 + +0.0 903,213 + PGA1_c08755 0.35 -0.1 903,213 + PGA1_c08755 0.35 -1.1 903,213 + PGA1_c08755 0.35 -1.8 903,213 + PGA1_c08755 0.35 +0.9 903,213 + PGA1_c08755 0.35 -0.7 903,213 + PGA1_c08755 0.35 -1.7 903,213 + PGA1_c08755 0.35 +1.2 903,213 + PGA1_c08755 0.35 +2.0 903,213 + PGA1_c08755 0.35 +0.8 903,213 + PGA1_c08755 0.35 -0.1 903,221 - PGA1_c08755 0.38 +0.2 903,221 - PGA1_c08755 0.38 -1.3 903,221 - PGA1_c08755 0.38 +0.3 903,221 - PGA1_c08755 0.38 -1.1 903,221 - PGA1_c08755 0.38 -0.1 903,247 + PGA1_c08755 0.48 +1.5 903,301 - PGA1_c08755 0.69 -0.2 903,595 - +0.0 903,619 - -0.4 903,624 + -1.4 903,632 - -1.3 903,697 - PGA1_c08760 0.11 -0.1 903,703 + PGA1_c08760 0.11 -0.2 903,754 + PGA1_c08760 0.13 +0.1 903,762 - PGA1_c08760 0.13 -1.1 903,762 - PGA1_c08760 0.13 -1.5 903,764 + PGA1_c08760 0.13 +0.3 903,772 - PGA1_c08760 0.13 +0.2 903,873 - PGA1_c08760 0.17 -1.8 903,873 - PGA1_c08760 0.17 +0.2 903,920 - PGA1_c08760 0.18 +1.7 903,952 + PGA1_c08760 0.20 -0.6 903,957 - PGA1_c08760 0.20 +0.2 904,000 + PGA1_c08760 0.21 -1.5 904,040 - PGA1_c08760 0.23 +0.0
Or see this region's nucleotide sequence