Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07700

Experiment: m.b. Gentamicin 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07690 and PGA1_c07700 overlap by 1 nucleotidesPGA1_c07700 and PGA1_c07710 overlap by 4 nucleotidesPGA1_c07710 and PGA1_c07720 are separated by 37 nucleotidesPGA1_c07720 and PGA1_c07730 are separated by 28 nucleotides PGA1_c07690: PGA1_c07690 - (S)-mandelate dehydrogenase MdlB, at 797,465 to 798,556 _c07690 PGA1_c07700: PGA1_c07700 - putative sulfopyruvate decarboxylase subunit beta, at 798,556 to 799,110 _c07700 PGA1_c07710: PGA1_c07710 - putative sulfopyruvate decarboxylase subunit alpha, at 799,107 to 799,613 _c07710 PGA1_c07720: PGA1_c07720 - universal stress protein, at 799,651 to 800,061 _c07720 PGA1_c07730: PGA1_c07730 - putative zinc-binding alcohol dehydrogenase, at 800,090 to 801,070 _c07730 Position (kb) 798 799 800Strain fitness (log2 ratio) -2 -1 0 1 2 3at 797.566 kb on - strandat 797.581 kb on + strand, within PGA1_c07690at 797.605 kb on - strand, within PGA1_c07690at 797.624 kb on - strand, within PGA1_c07690at 797.641 kb on - strand, within PGA1_c07690at 797.738 kb on - strand, within PGA1_c07690at 797.781 kb on + strand, within PGA1_c07690at 797.791 kb on + strand, within PGA1_c07690at 797.949 kb on + strand, within PGA1_c07690at 797.951 kb on - strand, within PGA1_c07690at 797.957 kb on - strand, within PGA1_c07690at 797.957 kb on - strand, within PGA1_c07690at 797.965 kb on + strand, within PGA1_c07690at 797.965 kb on + strand, within PGA1_c07690at 797.965 kb on + strand, within PGA1_c07690at 797.973 kb on - strand, within PGA1_c07690at 797.988 kb on - strand, within PGA1_c07690at 798.037 kb on - strand, within PGA1_c07690at 798.038 kb on + strand, within PGA1_c07690at 798.078 kb on + strand, within PGA1_c07690at 798.138 kb on - strand, within PGA1_c07690at 798.148 kb on + strand, within PGA1_c07690at 798.182 kb on + strand, within PGA1_c07690at 798.184 kb on - strand, within PGA1_c07690at 798.184 kb on - strand, within PGA1_c07690at 798.190 kb on - strand, within PGA1_c07690at 798.305 kb on + strand, within PGA1_c07690at 798.364 kb on + strand, within PGA1_c07690at 798.419 kb on + strand, within PGA1_c07690at 798.419 kb on + strand, within PGA1_c07690at 798.427 kb on - strand, within PGA1_c07690at 798.434 kb on + strand, within PGA1_c07690at 798.434 kb on + strand, within PGA1_c07690at 798.440 kb on - strand, within PGA1_c07690at 798.450 kb on - strandat 798.452 kb on - strandat 798.495 kb on - strandat 798.497 kb on - strandat 798.562 kb on + strandat 798.567 kb on - strandat 798.659 kb on - strand, within PGA1_c07700at 798.703 kb on - strand, within PGA1_c07700at 798.738 kb on - strand, within PGA1_c07700at 798.782 kb on - strand, within PGA1_c07700at 798.786 kb on - strand, within PGA1_c07700at 798.842 kb on - strand, within PGA1_c07700at 798.886 kb on + strand, within PGA1_c07700at 798.891 kb on + strand, within PGA1_c07700at 798.946 kb on + strand, within PGA1_c07700at 798.958 kb on + strand, within PGA1_c07700at 799.023 kb on + strand, within PGA1_c07700at 799.023 kb on + strand, within PGA1_c07700at 799.023 kb on + strand, within PGA1_c07700at 799.023 kb on + strand, within PGA1_c07700at 799.031 kb on - strand, within PGA1_c07700at 799.064 kb on - strandat 799.066 kb on + strandat 799.151 kb on - strandat 799.159 kb on + strand, within PGA1_c07710at 799.376 kb on + strand, within PGA1_c07710at 799.455 kb on + strand, within PGA1_c07710at 799.468 kb on + strand, within PGA1_c07710at 799.643 kb on + strandat 799.658 kb on - strandat 799.666 kb on + strandat 799.674 kb on - strandat 799.701 kb on - strand, within PGA1_c07720at 799.759 kb on + strand, within PGA1_c07720at 799.765 kb on + strand, within PGA1_c07720at 799.773 kb on - strand, within PGA1_c07720at 799.774 kb on + strand, within PGA1_c07720at 799.787 kb on - strand, within PGA1_c07720at 799.787 kb on - strand, within PGA1_c07720at 799.903 kb on + strand, within PGA1_c07720at 799.938 kb on - strand, within PGA1_c07720at 799.938 kb on - strand, within PGA1_c07720at 800.009 kb on + strand, within PGA1_c07720at 800.012 kb on - strand, within PGA1_c07720at 800.017 kb on - strand, within PGA1_c07720at 800.076 kb on + strandat 800.081 kb on + strandat 800.081 kb on + strandat 800.081 kb on + strandat 800.081 kb on + strandat 800.081 kb on + strandat 800.081 kb on + strandat 800.081 kb on + strandat 800.081 kb on + strandat 800.081 kb on + strandat 800.089 kb on - strandat 800.089 kb on - strandat 800.089 kb on - strandat 800.089 kb on - strandat 800.090 kb on - strandat 800.096 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.002 mg/ml
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797,566 - +1.8
797,581 + PGA1_c07690 0.11 -0.2
797,605 - PGA1_c07690 0.13 +0.1
797,624 - PGA1_c07690 0.15 +0.1
797,641 - PGA1_c07690 0.16 +0.4
797,738 - PGA1_c07690 0.25 -0.3
797,781 + PGA1_c07690 0.29 +0.8
797,791 + PGA1_c07690 0.30 +0.8
797,949 + PGA1_c07690 0.44 -1.2
797,951 - PGA1_c07690 0.45 -1.4
797,957 - PGA1_c07690 0.45 +0.1
797,957 - PGA1_c07690 0.45 -1.2
797,965 + PGA1_c07690 0.46 -0.8
797,965 + PGA1_c07690 0.46 +0.2
797,965 + PGA1_c07690 0.46 -0.8
797,973 - PGA1_c07690 0.47 +3.6
797,988 - PGA1_c07690 0.48 +0.8
798,037 - PGA1_c07690 0.52 -0.2
798,038 + PGA1_c07690 0.52 -0.2
798,078 + PGA1_c07690 0.56 +2.6
798,138 - PGA1_c07690 0.62 -0.2
798,148 + PGA1_c07690 0.63 -0.2
798,182 + PGA1_c07690 0.66 -1.5
798,184 - PGA1_c07690 0.66 -2.1
798,184 - PGA1_c07690 0.66 +0.3
798,190 - PGA1_c07690 0.66 -0.4
798,305 + PGA1_c07690 0.77 +0.4
798,364 + PGA1_c07690 0.82 +0.8
798,419 + PGA1_c07690 0.87 -0.2
798,419 + PGA1_c07690 0.87 -0.8
798,427 - PGA1_c07690 0.88 -0.5
798,434 + PGA1_c07690 0.89 +1.1
798,434 + PGA1_c07690 0.89 -0.4
798,440 - PGA1_c07690 0.89 -1.5
798,450 - +1.2
798,452 - +0.0
798,495 - -0.8
798,497 - +0.0
798,562 + +0.2
798,567 - +2.2
798,659 - PGA1_c07700 0.19 +1.8
798,703 - PGA1_c07700 0.26 +0.8
798,738 - PGA1_c07700 0.33 +0.8
798,782 - PGA1_c07700 0.41 +0.1
798,786 - PGA1_c07700 0.41 +0.6
798,842 - PGA1_c07700 0.52 -1.4
798,886 + PGA1_c07700 0.59 +1.4
798,891 + PGA1_c07700 0.60 +1.8
798,946 + PGA1_c07700 0.70 +0.4
798,958 + PGA1_c07700 0.72 +0.8
799,023 + PGA1_c07700 0.84 +0.2
799,023 + PGA1_c07700 0.84 +0.2
799,023 + PGA1_c07700 0.84 +0.8
799,023 + PGA1_c07700 0.84 +0.2
799,031 - PGA1_c07700 0.86 +2.1
799,064 - +0.8
799,066 + -0.5
799,151 - -1.3
799,159 + PGA1_c07710 0.10 -0.8
799,376 + PGA1_c07710 0.53 -0.2
799,455 + PGA1_c07710 0.69 +2.4
799,468 + PGA1_c07710 0.71 -0.2
799,643 + -1.5
799,658 - +0.8
799,666 + -0.2
799,674 - +2.0
799,701 - PGA1_c07720 0.12 +0.8
799,759 + PGA1_c07720 0.26 +0.8
799,765 + PGA1_c07720 0.28 +0.8
799,773 - PGA1_c07720 0.30 +0.6
799,774 + PGA1_c07720 0.30 +1.4
799,787 - PGA1_c07720 0.33 +1.5
799,787 - PGA1_c07720 0.33 +3.6
799,903 + PGA1_c07720 0.61 +0.5
799,938 - PGA1_c07720 0.70 +0.8
799,938 - PGA1_c07720 0.70 -1.2
800,009 + PGA1_c07720 0.87 +0.2
800,012 - PGA1_c07720 0.88 -1.8
800,017 - PGA1_c07720 0.89 +1.8
800,076 + -0.2
800,081 + -0.8
800,081 + +0.8
800,081 + +0.1
800,081 + +2.4
800,081 + +0.8
800,081 + +0.8
800,081 + +1.4
800,081 + +2.8
800,081 + -1.2
800,089 - -0.5
800,089 - -0.2
800,089 - -2.0
800,089 - +1.2
800,090 - +1.7
800,096 - -0.4

Or see this region's nucleotide sequence