Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07440

Experiment: m.b. Gentamicin 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07420 and PGA1_c07430 are separated by 134 nucleotidesPGA1_c07430 and PGA1_c07440 are separated by 18 nucleotidesPGA1_c07440 and PGA1_c07450 are separated by 66 nucleotidesPGA1_c07450 and PGA1_c07460 are separated by 51 nucleotides PGA1_c07420: PGA1_c07420 - extracellular solute-binding protein, at 765,629 to 766,879 _c07420 PGA1_c07430: PGA1_c07430 - putative transcriptional regulator, IclR family, at 767,014 to 767,805 _c07430 PGA1_c07440: PGA1_c07440 - ABC transporter, ATP binding protein, at 767,824 to 768,885 _c07440 PGA1_c07450: PGA1_c07450 - putative NAD dependent epimerase/dehydratase, at 768,952 to 769,548 _c07450 PGA1_c07460: PGA1_c07460 - glutathione S-transferase domain-containing protein, at 769,600 to 770,214 _c07460 Position (kb) 767 768 769Strain fitness (log2 ratio) -2 -1 0 1 2at 766.826 kb on + strandat 766.826 kb on + strandat 766.831 kb on + strandat 766.831 kb on + strandat 766.834 kb on - strandat 766.834 kb on - strandat 766.839 kb on - strandat 766.839 kb on - strandat 766.839 kb on - strandat 766.839 kb on - strandat 766.839 kb on - strandat 766.839 kb on - strandat 766.983 kb on - strandat 767.000 kb on + strandat 767.011 kb on + strandat 767.140 kb on - strand, within PGA1_c07430at 767.162 kb on + strand, within PGA1_c07430at 767.292 kb on - strand, within PGA1_c07430at 767.315 kb on + strand, within PGA1_c07430at 767.357 kb on - strand, within PGA1_c07430at 767.412 kb on + strand, within PGA1_c07430at 767.432 kb on + strand, within PGA1_c07430at 767.482 kb on + strand, within PGA1_c07430at 767.533 kb on + strand, within PGA1_c07430at 767.540 kb on + strand, within PGA1_c07430at 767.541 kb on - strand, within PGA1_c07430at 767.559 kb on - strand, within PGA1_c07430at 767.607 kb on - strand, within PGA1_c07430at 767.657 kb on - strand, within PGA1_c07430at 767.756 kb on + strandat 767.779 kb on + strandat 767.814 kb on - strandat 767.841 kb on + strandat 767.940 kb on - strand, within PGA1_c07440at 767.988 kb on - strand, within PGA1_c07440at 768.018 kb on + strand, within PGA1_c07440at 768.024 kb on + strand, within PGA1_c07440at 768.083 kb on + strand, within PGA1_c07440at 768.092 kb on + strand, within PGA1_c07440at 768.110 kb on - strand, within PGA1_c07440at 768.221 kb on - strand, within PGA1_c07440at 768.250 kb on + strand, within PGA1_c07440at 768.275 kb on + strand, within PGA1_c07440at 768.275 kb on + strand, within PGA1_c07440at 768.275 kb on + strand, within PGA1_c07440at 768.275 kb on + strand, within PGA1_c07440at 768.275 kb on + strand, within PGA1_c07440at 768.283 kb on - strand, within PGA1_c07440at 768.309 kb on - strand, within PGA1_c07440at 768.314 kb on - strand, within PGA1_c07440at 768.314 kb on - strand, within PGA1_c07440at 768.384 kb on + strand, within PGA1_c07440at 768.395 kb on + strand, within PGA1_c07440at 768.395 kb on + strand, within PGA1_c07440at 768.395 kb on + strand, within PGA1_c07440at 768.403 kb on - strand, within PGA1_c07440at 768.405 kb on + strand, within PGA1_c07440at 768.405 kb on + strand, within PGA1_c07440at 768.405 kb on + strand, within PGA1_c07440at 768.455 kb on + strand, within PGA1_c07440at 768.460 kb on + strand, within PGA1_c07440at 768.463 kb on - strand, within PGA1_c07440at 768.463 kb on - strand, within PGA1_c07440at 768.463 kb on - strand, within PGA1_c07440at 768.465 kb on + strand, within PGA1_c07440at 768.534 kb on - strand, within PGA1_c07440at 768.534 kb on - strand, within PGA1_c07440at 768.554 kb on + strand, within PGA1_c07440at 768.572 kb on - strand, within PGA1_c07440at 768.589 kb on + strand, within PGA1_c07440at 768.715 kb on - strand, within PGA1_c07440at 768.732 kb on + strand, within PGA1_c07440at 768.734 kb on + strand, within PGA1_c07440at 768.790 kb on + strandat 768.790 kb on + strandat 768.881 kb on - strandat 768.896 kb on + strandat 768.896 kb on + strandat 768.896 kb on + strandat 768.904 kb on - strandat 768.971 kb on - strandat 769.053 kb on - strand, within PGA1_c07450at 769.112 kb on - strand, within PGA1_c07450at 769.119 kb on + strand, within PGA1_c07450at 769.129 kb on + strand, within PGA1_c07450at 769.129 kb on + strand, within PGA1_c07450at 769.129 kb on + strand, within PGA1_c07450at 769.129 kb on + strand, within PGA1_c07450at 769.137 kb on - strand, within PGA1_c07450at 769.137 kb on - strand, within PGA1_c07450at 769.144 kb on + strand, within PGA1_c07450at 769.166 kb on + strand, within PGA1_c07450at 769.378 kb on - strand, within PGA1_c07450at 769.456 kb on + strand, within PGA1_c07450at 769.456 kb on + strand, within PGA1_c07450at 769.464 kb on - strand, within PGA1_c07450at 769.477 kb on - strand, within PGA1_c07450at 769.478 kb on - strand, within PGA1_c07450at 769.478 kb on - strand, within PGA1_c07450at 769.525 kb on + strandat 769.619 kb on + strandat 769.625 kb on + strandat 769.633 kb on - strandat 769.633 kb on - strandat 769.678 kb on - strand, within PGA1_c07460at 769.686 kb on + strand, within PGA1_c07460at 769.694 kb on - strand, within PGA1_c07460at 769.801 kb on - strand, within PGA1_c07460at 769.819 kb on + strand, within PGA1_c07460at 769.827 kb on - strand, within PGA1_c07460at 769.836 kb on - strand, within PGA1_c07460at 769.864 kb on + strand, within PGA1_c07460at 769.864 kb on + strand, within PGA1_c07460at 769.864 kb on + strand, within PGA1_c07460at 769.864 kb on + strand, within PGA1_c07460at 769.864 kb on + strand, within PGA1_c07460at 769.870 kb on - strand, within PGA1_c07460at 769.872 kb on - strand, within PGA1_c07460at 769.872 kb on - strand, within PGA1_c07460at 769.878 kb on + strand, within PGA1_c07460at 769.878 kb on + strand, within PGA1_c07460

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.002 mg/ml
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766,826 + -2.5
766,826 + -1.8
766,831 + -0.4
766,831 + -0.4
766,834 - -1.1
766,834 - -1.2
766,839 - +0.0
766,839 - +0.2
766,839 - -0.3
766,839 - +0.3
766,839 - +0.1
766,839 - -0.2
766,983 - -0.2
767,000 + -2.3
767,011 + -0.5
767,140 - PGA1_c07430 0.16 +1.0
767,162 + PGA1_c07430 0.19 +0.5
767,292 - PGA1_c07430 0.35 +1.2
767,315 + PGA1_c07430 0.38 +0.3
767,357 - PGA1_c07430 0.43 +0.8
767,412 + PGA1_c07430 0.50 -0.4
767,432 + PGA1_c07430 0.53 +1.0
767,482 + PGA1_c07430 0.59 +0.4
767,533 + PGA1_c07430 0.66 -0.8
767,540 + PGA1_c07430 0.66 +0.6
767,541 - PGA1_c07430 0.67 +0.2
767,559 - PGA1_c07430 0.69 -0.5
767,607 - PGA1_c07430 0.75 +1.0
767,657 - PGA1_c07430 0.81 +0.1
767,756 + +0.2
767,779 + +0.9
767,814 - +1.2
767,841 + -0.2
767,940 - PGA1_c07440 0.11 -0.1
767,988 - PGA1_c07440 0.15 -0.6
768,018 + PGA1_c07440 0.18 -1.3
768,024 + PGA1_c07440 0.19 -0.0
768,083 + PGA1_c07440 0.24 -1.7
768,092 + PGA1_c07440 0.25 +1.2
768,110 - PGA1_c07440 0.27 -0.5
768,221 - PGA1_c07440 0.37 -0.3
768,250 + PGA1_c07440 0.40 +1.1
768,275 + PGA1_c07440 0.42 +0.6
768,275 + PGA1_c07440 0.42 +0.7
768,275 + PGA1_c07440 0.42 -0.8
768,275 + PGA1_c07440 0.42 -0.6
768,275 + PGA1_c07440 0.42 +0.2
768,283 - PGA1_c07440 0.43 -0.6
768,309 - PGA1_c07440 0.46 +0.9
768,314 - PGA1_c07440 0.46 -1.1
768,314 - PGA1_c07440 0.46 -1.7
768,384 + PGA1_c07440 0.53 +0.4
768,395 + PGA1_c07440 0.54 -0.7
768,395 + PGA1_c07440 0.54 -0.1
768,395 + PGA1_c07440 0.54 +1.1
768,403 - PGA1_c07440 0.55 -0.5
768,405 + PGA1_c07440 0.55 -0.5
768,405 + PGA1_c07440 0.55 -0.2
768,405 + PGA1_c07440 0.55 -1.2
768,455 + PGA1_c07440 0.59 -1.6
768,460 + PGA1_c07440 0.60 +0.0
768,463 - PGA1_c07440 0.60 -0.1
768,463 - PGA1_c07440 0.60 -0.4
768,463 - PGA1_c07440 0.60 +0.5
768,465 + PGA1_c07440 0.60 -2.6
768,534 - PGA1_c07440 0.67 -0.4
768,534 - PGA1_c07440 0.67 +1.2
768,554 + PGA1_c07440 0.69 +0.4
768,572 - PGA1_c07440 0.70 -0.1
768,589 + PGA1_c07440 0.72 -0.6
768,715 - PGA1_c07440 0.84 +0.3
768,732 + PGA1_c07440 0.85 -0.6
768,734 + PGA1_c07440 0.86 +1.2
768,790 + -0.3
768,790 + -0.1
768,881 - +0.3
768,896 + +0.6
768,896 + +0.6
768,896 + +1.0
768,904 - +0.5
768,971 - +0.1
769,053 - PGA1_c07450 0.17 +0.5
769,112 - PGA1_c07450 0.27 +0.8
769,119 + PGA1_c07450 0.28 -0.5
769,129 + PGA1_c07450 0.30 +0.9
769,129 + PGA1_c07450 0.30 +0.7
769,129 + PGA1_c07450 0.30 -0.2
769,129 + PGA1_c07450 0.30 -2.2
769,137 - PGA1_c07450 0.31 +0.0
769,137 - PGA1_c07450 0.31 -0.5
769,144 + PGA1_c07450 0.32 -1.8
769,166 + PGA1_c07450 0.36 +2.1
769,378 - PGA1_c07450 0.71 +0.2
769,456 + PGA1_c07450 0.84 +0.2
769,456 + PGA1_c07450 0.84 +0.2
769,464 - PGA1_c07450 0.86 +0.7
769,477 - PGA1_c07450 0.88 -0.0
769,478 - PGA1_c07450 0.88 -0.6
769,478 - PGA1_c07450 0.88 +0.8
769,525 + +0.1
769,619 + +0.2
769,625 + -2.4
769,633 - +1.8
769,633 - +0.2
769,678 - PGA1_c07460 0.13 -0.2
769,686 + PGA1_c07460 0.14 +0.2
769,694 - PGA1_c07460 0.15 +0.3
769,801 - PGA1_c07460 0.33 +0.3
769,819 + PGA1_c07460 0.36 -0.5
769,827 - PGA1_c07460 0.37 +0.0
769,836 - PGA1_c07460 0.38 -0.0
769,864 + PGA1_c07460 0.43 +0.1
769,864 + PGA1_c07460 0.43 -2.6
769,864 + PGA1_c07460 0.43 -0.8
769,864 + PGA1_c07460 0.43 -0.9
769,864 + PGA1_c07460 0.43 +0.5
769,870 - PGA1_c07460 0.44 +0.5
769,872 - PGA1_c07460 0.44 +0.8
769,872 - PGA1_c07460 0.44 +0.1
769,878 + PGA1_c07460 0.45 -0.1
769,878 + PGA1_c07460 0.45 +0.6

Or see this region's nucleotide sequence