Strain Fitness in Marinobacter adhaerens HP15 around HP15_665

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_663 and HP15_664 overlap by 1 nucleotidesHP15_664 and HP15_665 are separated by 51 nucleotidesHP15_665 and HP15_666 overlap by 1 nucleotidesHP15_666 and HP15_667 overlap by 25 nucleotides HP15_663: HP15_663 - phage baseplate assembly protein, at 684,629 to 685,549 _663 HP15_664: HP15_664 - GPW/gp25, at 685,549 to 685,887 _664 HP15_665: HP15_665 - phage-related baseplate assembly protein V, at 685,939 to 686,724 _665 HP15_666: HP15_666 - conserved hypothetical protein, at 686,724 to 687,284 _666 HP15_667: HP15_667 - prophage LambdaW5, minor tail protein Z-like protein, at 687,260 to 687,802 _667 Position (kb) 685 686 687Strain fitness (log2 ratio) -2 -1 0 1at 684.968 kb on + strand, within HP15_663at 684.970 kb on + strand, within HP15_663at 684.976 kb on - strand, within HP15_663at 684.976 kb on - strand, within HP15_663at 684.976 kb on - strand, within HP15_663at 685.009 kb on + strand, within HP15_663at 685.030 kb on - strand, within HP15_663at 685.059 kb on + strand, within HP15_663at 685.093 kb on + strand, within HP15_663at 685.131 kb on + strand, within HP15_663at 685.139 kb on - strand, within HP15_663at 685.209 kb on + strand, within HP15_663at 685.275 kb on - strand, within HP15_663at 685.275 kb on - strand, within HP15_663at 685.437 kb on + strand, within HP15_663at 685.452 kb on + strand, within HP15_663at 685.460 kb on - strandat 685.462 kb on + strandat 685.565 kb on - strandat 685.615 kb on + strand, within HP15_664at 685.689 kb on - strand, within HP15_664at 685.690 kb on + strand, within HP15_664at 685.735 kb on - strand, within HP15_664at 685.777 kb on - strand, within HP15_664at 685.889 kb on - strandat 686.031 kb on + strand, within HP15_665at 686.103 kb on - strand, within HP15_665at 686.174 kb on - strand, within HP15_665at 686.397 kb on + strand, within HP15_665at 686.428 kb on + strand, within HP15_665at 686.428 kb on + strand, within HP15_665at 686.428 kb on + strand, within HP15_665at 686.428 kb on + strand, within HP15_665at 686.428 kb on + strand, within HP15_665at 686.436 kb on - strand, within HP15_665at 686.436 kb on - strand, within HP15_665at 686.436 kb on - strand, within HP15_665at 686.436 kb on - strand, within HP15_665at 686.436 kb on - strand, within HP15_665at 686.456 kb on + strand, within HP15_665at 686.456 kb on + strand, within HP15_665at 686.459 kb on - strand, within HP15_665at 686.469 kb on + strand, within HP15_665at 686.492 kb on + strand, within HP15_665at 686.618 kb on + strand, within HP15_665at 686.709 kb on + strandat 686.741 kb on - strandat 686.766 kb on + strandat 686.777 kb on + strandat 686.787 kb on - strand, within HP15_666at 686.802 kb on - strand, within HP15_666at 686.809 kb on - strand, within HP15_666at 686.839 kb on + strand, within HP15_666at 686.872 kb on + strand, within HP15_666at 686.872 kb on + strand, within HP15_666at 686.880 kb on - strand, within HP15_666at 686.903 kb on - strand, within HP15_666at 686.912 kb on - strand, within HP15_666at 686.949 kb on - strand, within HP15_666at 687.036 kb on - strand, within HP15_666at 687.140 kb on + strand, within HP15_666at 687.213 kb on - strand, within HP15_666at 687.284 kb on + strandat 687.354 kb on + strand, within HP15_667at 687.354 kb on + strand, within HP15_667at 687.425 kb on + strand, within HP15_667at 687.425 kb on + strand, within HP15_667at 687.433 kb on + strand, within HP15_667at 687.433 kb on - strand, within HP15_667at 687.433 kb on - strand, within HP15_667at 687.455 kb on - strand, within HP15_667at 687.512 kb on - strand, within HP15_667at 687.519 kb on + strand, within HP15_667at 687.526 kb on + strand, within HP15_667at 687.529 kb on - strand, within HP15_667at 687.544 kb on + strand, within HP15_667at 687.552 kb on - strand, within HP15_667

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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684,968 + HP15_663 0.37 -1.2
684,970 + HP15_663 0.37 -0.9
684,976 - HP15_663 0.38 -1.0
684,976 - HP15_663 0.38 -0.5
684,976 - HP15_663 0.38 -1.7
685,009 + HP15_663 0.41 +0.3
685,030 - HP15_663 0.44 -1.3
685,059 + HP15_663 0.47 -0.5
685,093 + HP15_663 0.50 -1.2
685,131 + HP15_663 0.55 -0.4
685,139 - HP15_663 0.55 -0.5
685,209 + HP15_663 0.63 -0.1
685,275 - HP15_663 0.70 +1.4
685,275 - HP15_663 0.70 -0.7
685,437 + HP15_663 0.88 +0.3
685,452 + HP15_663 0.89 -0.4
685,460 - -1.8
685,462 + -0.3
685,565 - -0.2
685,615 + HP15_664 0.19 -1.0
685,689 - HP15_664 0.41 -0.5
685,690 + HP15_664 0.42 -2.2
685,735 - HP15_664 0.55 -0.9
685,777 - HP15_664 0.67 -0.8
685,889 - -1.0
686,031 + HP15_665 0.12 -0.3
686,103 - HP15_665 0.21 -1.6
686,174 - HP15_665 0.30 -1.5
686,397 + HP15_665 0.58 -0.9
686,428 + HP15_665 0.62 -0.7
686,428 + HP15_665 0.62 +0.3
686,428 + HP15_665 0.62 -0.8
686,428 + HP15_665 0.62 -1.3
686,428 + HP15_665 0.62 -0.6
686,436 - HP15_665 0.63 -0.5
686,436 - HP15_665 0.63 -0.6
686,436 - HP15_665 0.63 -0.3
686,436 - HP15_665 0.63 +0.5
686,436 - HP15_665 0.63 +0.4
686,456 + HP15_665 0.66 -0.6
686,456 + HP15_665 0.66 -0.7
686,459 - HP15_665 0.66 -1.4
686,469 + HP15_665 0.67 -1.3
686,492 + HP15_665 0.70 -0.6
686,618 + HP15_665 0.86 -0.0
686,709 + -0.9
686,741 - -1.3
686,766 + +0.7
686,777 + -0.7
686,787 - HP15_666 0.11 -0.0
686,802 - HP15_666 0.14 -0.1
686,809 - HP15_666 0.15 -0.5
686,839 + HP15_666 0.20 -0.6
686,872 + HP15_666 0.26 -2.0
686,872 + HP15_666 0.26 -1.0
686,880 - HP15_666 0.28 -1.8
686,903 - HP15_666 0.32 -0.5
686,912 - HP15_666 0.34 -0.8
686,949 - HP15_666 0.40 -0.8
687,036 - HP15_666 0.56 +1.5
687,140 + HP15_666 0.74 -0.2
687,213 - HP15_666 0.87 +0.0
687,284 + -1.3
687,354 + HP15_667 0.17 -0.2
687,354 + HP15_667 0.17 +0.2
687,425 + HP15_667 0.30 +0.6
687,425 + HP15_667 0.30 -0.7
687,433 + HP15_667 0.32 -1.1
687,433 - HP15_667 0.32 +1.1
687,433 - HP15_667 0.32 -0.9
687,455 - HP15_667 0.36 -0.4
687,512 - HP15_667 0.46 -1.6
687,519 + HP15_667 0.48 -2.5
687,526 + HP15_667 0.49 -1.4
687,529 - HP15_667 0.50 -0.3
687,544 + HP15_667 0.52 -0.1
687,552 - HP15_667 0.54 -0.2

Or see this region's nucleotide sequence