Experiment: m.b. Gentamicin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06120 and PGA1_c06130 are separated by 200 nucleotides PGA1_c06130 and PGA1_c06140 are separated by 19 nucleotides
PGA1_c06120: PGA1_c06120 - Flp pilus assembly protein, ATPase CpaE, at 626,301 to 627,533
_c06120
PGA1_c06130: PGA1_c06130 - outer membrane protein OmpA-like protein, at 627,734 to 628,360
_c06130
PGA1_c06140: PGA1_c06140 - putative bacterial type II/III secretion system protein, at 628,380 to 629,834
_c06140
Position (kb) 627
628
629 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 626.742 kb on - strand, within PGA1_c06120 at 626.800 kb on + strand, within PGA1_c06120 at 626.800 kb on + strand, within PGA1_c06120 at 626.819 kb on + strand, within PGA1_c06120 at 626.917 kb on - strand, within PGA1_c06120 at 626.917 kb on - strand, within PGA1_c06120 at 626.919 kb on + strand, within PGA1_c06120 at 626.919 kb on + strand, within PGA1_c06120 at 626.969 kb on - strand, within PGA1_c06120 at 627.050 kb on - strand, within PGA1_c06120 at 627.115 kb on - strand, within PGA1_c06120 at 627.117 kb on + strand, within PGA1_c06120 at 627.178 kb on + strand, within PGA1_c06120 at 627.216 kb on + strand, within PGA1_c06120 at 627.234 kb on + strand, within PGA1_c06120 at 627.239 kb on + strand, within PGA1_c06120 at 627.242 kb on - strand, within PGA1_c06120 at 627.338 kb on - strand, within PGA1_c06120 at 627.420 kb on - strand at 627.455 kb on + strand at 627.463 kb on - strand at 627.470 kb on + strand at 627.470 kb on + strand at 627.470 kb on + strand at 627.478 kb on - strand at 627.504 kb on + strand at 627.536 kb on + strand at 627.544 kb on - strand at 627.551 kb on - strand at 627.567 kb on - strand at 627.590 kb on + strand at 627.625 kb on - strand at 627.663 kb on - strand at 627.689 kb on - strand at 627.691 kb on + strand at 627.691 kb on + strand at 627.691 kb on + strand at 627.694 kb on - strand at 627.701 kb on + strand at 627.701 kb on + strand at 627.709 kb on - strand at 627.720 kb on - strand at 627.722 kb on + strand at 627.777 kb on + strand at 627.785 kb on - strand at 627.811 kb on + strand, within PGA1_c06130 at 627.982 kb on - strand, within PGA1_c06130 at 627.992 kb on + strand, within PGA1_c06130 at 628.000 kb on - strand, within PGA1_c06130 at 628.013 kb on + strand, within PGA1_c06130 at 628.136 kb on - strand, within PGA1_c06130 at 628.136 kb on - strand, within PGA1_c06130 at 628.157 kb on + strand, within PGA1_c06130 at 628.268 kb on + strand, within PGA1_c06130 at 628.268 kb on + strand, within PGA1_c06130 at 628.291 kb on - strand, within PGA1_c06130 at 628.291 kb on - strand, within PGA1_c06130 at 628.323 kb on + strand at 628.331 kb on - strand at 628.331 kb on - strand at 628.331 kb on - strand at 628.333 kb on + strand at 628.413 kb on + strand at 628.476 kb on - strand at 628.508 kb on - strand at 628.518 kb on + strand at 628.553 kb on - strand, within PGA1_c06140 at 628.613 kb on - strand, within PGA1_c06140 at 628.680 kb on + strand, within PGA1_c06140 at 628.680 kb on + strand, within PGA1_c06140 at 628.688 kb on - strand, within PGA1_c06140 at 628.701 kb on + strand, within PGA1_c06140 at 628.709 kb on - strand, within PGA1_c06140 at 628.735 kb on - strand, within PGA1_c06140 at 628.759 kb on + strand, within PGA1_c06140 at 628.843 kb on - strand, within PGA1_c06140 at 628.863 kb on + strand, within PGA1_c06140 at 628.890 kb on - strand, within PGA1_c06140 at 628.910 kb on - strand, within PGA1_c06140 at 628.926 kb on + strand, within PGA1_c06140 at 629.016 kb on - strand, within PGA1_c06140 at 629.053 kb on - strand, within PGA1_c06140 at 629.099 kb on - strand, within PGA1_c06140 at 629.128 kb on - strand, within PGA1_c06140 at 629.189 kb on + strand, within PGA1_c06140 at 629.214 kb on - strand, within PGA1_c06140 at 629.311 kb on - strand, within PGA1_c06140 at 629.353 kb on + strand, within PGA1_c06140
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.002 mg/ml remove 626,742 - PGA1_c06120 0.36 +1.5 626,800 + PGA1_c06120 0.40 +1.2 626,800 + PGA1_c06120 0.40 +0.1 626,819 + PGA1_c06120 0.42 -0.1 626,917 - PGA1_c06120 0.50 +0.9 626,917 - PGA1_c06120 0.50 +3.2 626,919 + PGA1_c06120 0.50 +1.3 626,919 + PGA1_c06120 0.50 +0.9 626,969 - PGA1_c06120 0.54 -0.5 627,050 - PGA1_c06120 0.61 +1.6 627,115 - PGA1_c06120 0.66 +0.9 627,117 + PGA1_c06120 0.66 +1.3 627,178 + PGA1_c06120 0.71 +1.6 627,216 + PGA1_c06120 0.74 +0.1 627,234 + PGA1_c06120 0.76 -0.5 627,239 + PGA1_c06120 0.76 +1.5 627,242 - PGA1_c06120 0.76 -0.1 627,338 - PGA1_c06120 0.84 +0.9 627,420 - -1.1 627,455 + -1.0 627,463 - +1.0 627,470 + +1.5 627,470 + +2.5 627,470 + -0.3 627,478 - +0.3 627,504 + +0.9 627,536 + -0.4 627,544 - -0.7 627,551 - -1.5 627,567 - +0.1 627,590 + -1.9 627,625 - -0.7 627,663 - +1.5 627,689 - -0.7 627,691 + +1.5 627,691 + +0.5 627,691 + +1.2 627,694 - +2.7 627,701 + +1.5 627,701 + +0.9 627,709 - +0.9 627,720 - +0.9 627,722 + +2.3 627,777 + +0.9 627,785 - +0.1 627,811 + PGA1_c06130 0.12 -0.1 627,982 - PGA1_c06130 0.40 +0.6 627,992 + PGA1_c06130 0.41 -1.7 628,000 - PGA1_c06130 0.42 +1.3 628,013 + PGA1_c06130 0.44 +0.0 628,136 - PGA1_c06130 0.64 -0.4 628,136 - PGA1_c06130 0.64 +0.1 628,157 + PGA1_c06130 0.67 +1.9 628,268 + PGA1_c06130 0.85 +0.9 628,268 + PGA1_c06130 0.85 -0.2 628,291 - PGA1_c06130 0.89 +1.9 628,291 - PGA1_c06130 0.89 -1.7 628,323 + +0.2 628,331 - -1.1 628,331 - -0.7 628,331 - +2.5 628,333 + -0.1 628,413 + +1.1 628,476 - +3.5 628,508 - -2.1 628,518 + -0.7 628,553 - PGA1_c06140 0.12 +1.5 628,613 - PGA1_c06140 0.16 +0.3 628,680 + PGA1_c06140 0.21 +1.6 628,680 + PGA1_c06140 0.21 +0.4 628,688 - PGA1_c06140 0.21 +0.3 628,701 + PGA1_c06140 0.22 +1.5 628,709 - PGA1_c06140 0.23 +0.4 628,735 - PGA1_c06140 0.24 +0.4 628,759 + PGA1_c06140 0.26 +2.2 628,843 - PGA1_c06140 0.32 -1.5 628,863 + PGA1_c06140 0.33 -1.8 628,890 - PGA1_c06140 0.35 +0.5 628,910 - PGA1_c06140 0.36 +1.3 628,926 + PGA1_c06140 0.38 -0.1 629,016 - PGA1_c06140 0.44 -0.3 629,053 - PGA1_c06140 0.46 -1.7 629,099 - PGA1_c06140 0.49 +3.2 629,128 - PGA1_c06140 0.51 +1.3 629,189 + PGA1_c06140 0.56 +0.3 629,214 - PGA1_c06140 0.57 +1.9 629,311 - PGA1_c06140 0.64 -1.1 629,353 + PGA1_c06140 0.67 +0.1
Or see this region's nucleotide sequence