Experiment: m.b. Gentamicin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05110 and PGA1_c05120 overlap by 10 nucleotides PGA1_c05120 and PGA1_c05130 overlap by 1 nucleotides
PGA1_c05110: PGA1_c05110 - dihydrodipicolinate synthase domain-containing protein, at 503,564 to 504,523
_c05110
PGA1_c05120: PGA1_c05120 - 4-hydroxyproline epimerase, at 504,514 to 505,458
_c05120
PGA1_c05130: PGA1_c05130 - aldehyde dehydrogenase, at 505,458 to 506,888
_c05130
Position (kb) 504
505
506 Strain fitness (log2 ratio) -2
-1
0
1
2 at 503.518 kb on - strand at 503.544 kb on + strand at 503.555 kb on + strand at 503.571 kb on + strand at 503.607 kb on - strand at 503.619 kb on - strand at 503.624 kb on - strand at 503.690 kb on - strand, within PGA1_c05110 at 503.692 kb on + strand, within PGA1_c05110 at 503.692 kb on + strand, within PGA1_c05110 at 503.692 kb on + strand, within PGA1_c05110 at 503.692 kb on + strand, within PGA1_c05110 at 503.700 kb on - strand, within PGA1_c05110 at 503.700 kb on - strand, within PGA1_c05110 at 503.700 kb on - strand, within PGA1_c05110 at 503.816 kb on - strand, within PGA1_c05110 at 503.816 kb on - strand, within PGA1_c05110 at 503.816 kb on - strand, within PGA1_c05110 at 503.843 kb on + strand, within PGA1_c05110 at 503.862 kb on + strand, within PGA1_c05110 at 503.862 kb on + strand, within PGA1_c05110 at 503.870 kb on - strand, within PGA1_c05110 at 503.870 kb on - strand, within PGA1_c05110 at 503.870 kb on - strand, within PGA1_c05110 at 503.870 kb on - strand, within PGA1_c05110 at 503.943 kb on - strand, within PGA1_c05110 at 503.974 kb on - strand, within PGA1_c05110 at 504.022 kb on + strand, within PGA1_c05110 at 504.048 kb on + strand, within PGA1_c05110 at 504.048 kb on + strand, within PGA1_c05110 at 504.048 kb on + strand, within PGA1_c05110 at 504.056 kb on + strand, within PGA1_c05110 at 504.056 kb on - strand, within PGA1_c05110 at 504.056 kb on - strand, within PGA1_c05110 at 504.056 kb on - strand, within PGA1_c05110 at 504.077 kb on - strand, within PGA1_c05110 at 504.104 kb on + strand, within PGA1_c05110 at 504.104 kb on + strand, within PGA1_c05110 at 504.147 kb on + strand, within PGA1_c05110 at 504.157 kb on - strand, within PGA1_c05110 at 504.221 kb on + strand, within PGA1_c05110 at 504.245 kb on - strand, within PGA1_c05110 at 504.292 kb on + strand, within PGA1_c05110 at 504.292 kb on + strand, within PGA1_c05110 at 504.313 kb on + strand, within PGA1_c05110 at 504.321 kb on + strand, within PGA1_c05110 at 504.321 kb on + strand, within PGA1_c05110 at 504.329 kb on - strand, within PGA1_c05110 at 504.383 kb on + strand, within PGA1_c05110 at 504.471 kb on - strand at 504.474 kb on + strand at 504.474 kb on + strand at 504.482 kb on + strand at 504.490 kb on - strand at 504.490 kb on - strand at 504.554 kb on + strand at 504.562 kb on - strand at 504.644 kb on + strand, within PGA1_c05120 at 504.652 kb on - strand, within PGA1_c05120 at 504.652 kb on - strand, within PGA1_c05120 at 504.717 kb on - strand, within PGA1_c05120 at 504.787 kb on - strand, within PGA1_c05120 at 504.805 kb on + strand, within PGA1_c05120 at 504.813 kb on - strand, within PGA1_c05120 at 504.815 kb on + strand, within PGA1_c05120 at 504.857 kb on + strand, within PGA1_c05120 at 504.983 kb on - strand, within PGA1_c05120 at 505.004 kb on + strand, within PGA1_c05120 at 505.010 kb on - strand, within PGA1_c05120 at 505.012 kb on - strand, within PGA1_c05120 at 505.022 kb on + strand, within PGA1_c05120 at 505.029 kb on - strand, within PGA1_c05120 at 505.032 kb on + strand, within PGA1_c05120 at 505.073 kb on + strand, within PGA1_c05120 at 505.075 kb on - strand, within PGA1_c05120 at 505.078 kb on + strand, within PGA1_c05120 at 505.085 kb on - strand, within PGA1_c05120 at 505.085 kb on - strand, within PGA1_c05120 at 505.101 kb on - strand, within PGA1_c05120 at 505.118 kb on + strand, within PGA1_c05120 at 505.142 kb on + strand, within PGA1_c05120 at 505.147 kb on + strand, within PGA1_c05120 at 505.147 kb on + strand, within PGA1_c05120 at 505.147 kb on + strand, within PGA1_c05120 at 505.147 kb on + strand, within PGA1_c05120 at 505.150 kb on - strand, within PGA1_c05120 at 505.155 kb on - strand, within PGA1_c05120 at 505.155 kb on - strand, within PGA1_c05120 at 505.155 kb on - strand, within PGA1_c05120 at 505.155 kb on - strand, within PGA1_c05120 at 505.155 kb on - strand, within PGA1_c05120 at 505.155 kb on - strand, within PGA1_c05120 at 505.155 kb on - strand, within PGA1_c05120 at 505.198 kb on + strand, within PGA1_c05120 at 505.198 kb on + strand, within PGA1_c05120 at 505.206 kb on - strand, within PGA1_c05120 at 505.206 kb on - strand, within PGA1_c05120 at 505.206 kb on - strand, within PGA1_c05120 at 505.206 kb on - strand, within PGA1_c05120 at 505.206 kb on - strand, within PGA1_c05120 at 505.286 kb on + strand, within PGA1_c05120 at 505.286 kb on + strand, within PGA1_c05120 at 505.286 kb on + strand, within PGA1_c05120 at 505.313 kb on + strand, within PGA1_c05120 at 505.331 kb on + strand, within PGA1_c05120 at 505.420 kb on - strand at 505.442 kb on + strand at 505.447 kb on + strand at 505.450 kb on - strand at 505.497 kb on - strand at 505.497 kb on - strand at 505.498 kb on - strand at 505.550 kb on - strand at 505.611 kb on + strand, within PGA1_c05130 at 505.613 kb on + strand, within PGA1_c05130 at 505.619 kb on - strand, within PGA1_c05130 at 505.619 kb on - strand, within PGA1_c05130 at 505.645 kb on + strand, within PGA1_c05130 at 505.655 kb on + strand, within PGA1_c05130 at 505.698 kb on - strand, within PGA1_c05130 at 505.698 kb on - strand, within PGA1_c05130 at 505.724 kb on + strand, within PGA1_c05130 at 505.724 kb on + strand, within PGA1_c05130 at 505.732 kb on - strand, within PGA1_c05130 at 505.732 kb on - strand, within PGA1_c05130 at 505.792 kb on + strand, within PGA1_c05130 at 505.813 kb on + strand, within PGA1_c05130 at 505.830 kb on + strand, within PGA1_c05130 at 505.838 kb on - strand, within PGA1_c05130 at 505.881 kb on + strand, within PGA1_c05130 at 505.938 kb on + strand, within PGA1_c05130 at 505.938 kb on + strand, within PGA1_c05130 at 505.943 kb on + strand, within PGA1_c05130 at 505.943 kb on + strand, within PGA1_c05130 at 505.946 kb on - strand, within PGA1_c05130 at 505.946 kb on - strand, within PGA1_c05130 at 506.074 kb on + strand, within PGA1_c05130 at 506.077 kb on - strand, within PGA1_c05130 at 506.088 kb on - strand, within PGA1_c05130 at 506.106 kb on - strand, within PGA1_c05130 at 506.187 kb on + strand, within PGA1_c05130 at 506.189 kb on - strand, within PGA1_c05130 at 506.235 kb on + strand, within PGA1_c05130 at 506.243 kb on - strand, within PGA1_c05130 at 506.243 kb on - strand, within PGA1_c05130 at 506.243 kb on - strand, within PGA1_c05130 at 506.286 kb on + strand, within PGA1_c05130 at 506.286 kb on + strand, within PGA1_c05130 at 506.291 kb on + strand, within PGA1_c05130 at 506.294 kb on - strand, within PGA1_c05130 at 506.294 kb on - strand, within PGA1_c05130 at 506.299 kb on - strand, within PGA1_c05130 at 506.299 kb on - strand, within PGA1_c05130 at 506.299 kb on - strand, within PGA1_c05130 at 506.299 kb on - strand, within PGA1_c05130 at 506.299 kb on - strand, within PGA1_c05130 at 506.300 kb on - strand, within PGA1_c05130 at 506.374 kb on - strand, within PGA1_c05130 at 506.391 kb on + strand, within PGA1_c05130 at 506.416 kb on + strand, within PGA1_c05130
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.002 mg/ml remove 503,518 - -0.1 503,544 + +0.2 503,555 + -0.6 503,571 + -0.2 503,607 - +0.1 503,619 - -0.8 503,624 - -0.3 503,690 - PGA1_c05110 0.13 -0.7 503,692 + PGA1_c05110 0.13 +0.6 503,692 + PGA1_c05110 0.13 -1.9 503,692 + PGA1_c05110 0.13 -1.3 503,692 + PGA1_c05110 0.13 +1.2 503,700 - PGA1_c05110 0.14 -1.2 503,700 - PGA1_c05110 0.14 -0.1 503,700 - PGA1_c05110 0.14 -0.6 503,816 - PGA1_c05110 0.26 -0.5 503,816 - PGA1_c05110 0.26 +0.4 503,816 - PGA1_c05110 0.26 -0.9 503,843 + PGA1_c05110 0.29 +0.6 503,862 + PGA1_c05110 0.31 -0.6 503,862 + PGA1_c05110 0.31 -1.9 503,870 - PGA1_c05110 0.32 +0.7 503,870 - PGA1_c05110 0.32 -1.5 503,870 - PGA1_c05110 0.32 +0.1 503,870 - PGA1_c05110 0.32 +0.2 503,943 - PGA1_c05110 0.39 -1.5 503,974 - PGA1_c05110 0.43 +1.6 504,022 + PGA1_c05110 0.48 +0.7 504,048 + PGA1_c05110 0.50 +0.5 504,048 + PGA1_c05110 0.50 +1.0 504,048 + PGA1_c05110 0.50 +0.9 504,056 + PGA1_c05110 0.51 +1.6 504,056 - PGA1_c05110 0.51 +0.6 504,056 - PGA1_c05110 0.51 -1.1 504,056 - PGA1_c05110 0.51 +0.0 504,077 - PGA1_c05110 0.53 -0.0 504,104 + PGA1_c05110 0.56 +0.3 504,104 + PGA1_c05110 0.56 -1.2 504,147 + PGA1_c05110 0.61 -0.3 504,157 - PGA1_c05110 0.62 +0.3 504,221 + PGA1_c05110 0.68 -0.5 504,245 - PGA1_c05110 0.71 +0.3 504,292 + PGA1_c05110 0.76 +0.3 504,292 + PGA1_c05110 0.76 -0.9 504,313 + PGA1_c05110 0.78 +2.4 504,321 + PGA1_c05110 0.79 -1.1 504,321 + PGA1_c05110 0.79 -0.2 504,329 - PGA1_c05110 0.80 +1.4 504,383 + PGA1_c05110 0.85 +0.5 504,471 - -0.6 504,474 + -0.7 504,474 + -1.5 504,482 + -2.1 504,490 - +0.2 504,490 - -0.4 504,554 + +0.8 504,562 - -0.4 504,644 + PGA1_c05120 0.14 +0.2 504,652 - PGA1_c05120 0.15 -1.0 504,652 - PGA1_c05120 0.15 -0.3 504,717 - PGA1_c05120 0.21 -0.4 504,787 - PGA1_c05120 0.29 -0.7 504,805 + PGA1_c05120 0.31 -0.3 504,813 - PGA1_c05120 0.32 +0.4 504,815 + PGA1_c05120 0.32 +1.4 504,857 + PGA1_c05120 0.36 +0.1 504,983 - PGA1_c05120 0.50 -1.7 505,004 + PGA1_c05120 0.52 -1.1 505,010 - PGA1_c05120 0.52 +0.2 505,012 - PGA1_c05120 0.53 +0.0 505,022 + PGA1_c05120 0.54 -0.5 505,029 - PGA1_c05120 0.54 -0.4 505,032 + PGA1_c05120 0.55 +0.7 505,073 + PGA1_c05120 0.59 +0.7 505,075 - PGA1_c05120 0.59 -0.3 505,078 + PGA1_c05120 0.60 -0.1 505,085 - PGA1_c05120 0.60 -0.6 505,085 - PGA1_c05120 0.60 -2.5 505,101 - PGA1_c05120 0.62 -0.9 505,118 + PGA1_c05120 0.64 +0.9 505,142 + PGA1_c05120 0.66 +0.2 505,147 + PGA1_c05120 0.67 +0.0 505,147 + PGA1_c05120 0.67 -0.3 505,147 + PGA1_c05120 0.67 +0.7 505,147 + PGA1_c05120 0.67 +0.2 505,150 - PGA1_c05120 0.67 +1.5 505,155 - PGA1_c05120 0.68 -0.9 505,155 - PGA1_c05120 0.68 -0.2 505,155 - PGA1_c05120 0.68 -2.6 505,155 - PGA1_c05120 0.68 -0.1 505,155 - PGA1_c05120 0.68 -0.1 505,155 - PGA1_c05120 0.68 -0.4 505,155 - PGA1_c05120 0.68 -1.7 505,198 + PGA1_c05120 0.72 +0.1 505,198 + PGA1_c05120 0.72 +0.2 505,206 - PGA1_c05120 0.73 +0.1 505,206 - PGA1_c05120 0.73 -0.6 505,206 - PGA1_c05120 0.73 -1.1 505,206 - PGA1_c05120 0.73 +0.1 505,206 - PGA1_c05120 0.73 -0.7 505,286 + PGA1_c05120 0.82 -0.7 505,286 + PGA1_c05120 0.82 -0.3 505,286 + PGA1_c05120 0.82 -0.1 505,313 + PGA1_c05120 0.85 +0.5 505,331 + PGA1_c05120 0.86 -1.7 505,420 - -2.3 505,442 + -1.2 505,447 + -0.2 505,450 - +0.1 505,497 - +0.3 505,497 - +0.3 505,498 - -2.5 505,550 - -0.1 505,611 + PGA1_c05130 0.11 -0.1 505,613 + PGA1_c05130 0.11 -0.4 505,619 - PGA1_c05130 0.11 -0.9 505,619 - PGA1_c05130 0.11 +1.6 505,645 + PGA1_c05130 0.13 -0.4 505,655 + PGA1_c05130 0.14 +0.7 505,698 - PGA1_c05130 0.17 +0.3 505,698 - PGA1_c05130 0.17 -0.1 505,724 + PGA1_c05130 0.19 +0.2 505,724 + PGA1_c05130 0.19 +1.9 505,732 - PGA1_c05130 0.19 +0.9 505,732 - PGA1_c05130 0.19 -0.2 505,792 + PGA1_c05130 0.23 -0.3 505,813 + PGA1_c05130 0.25 -1.1 505,830 + PGA1_c05130 0.26 -0.4 505,838 - PGA1_c05130 0.27 -0.4 505,881 + PGA1_c05130 0.30 -1.0 505,938 + PGA1_c05130 0.34 -0.1 505,938 + PGA1_c05130 0.34 -1.1 505,943 + PGA1_c05130 0.34 -0.1 505,943 + PGA1_c05130 0.34 +0.1 505,946 - PGA1_c05130 0.34 -0.1 505,946 - PGA1_c05130 0.34 -0.3 506,074 + PGA1_c05130 0.43 +0.5 506,077 - PGA1_c05130 0.43 -1.8 506,088 - PGA1_c05130 0.44 +0.7 506,106 - PGA1_c05130 0.45 -1.5 506,187 + PGA1_c05130 0.51 +0.2 506,189 - PGA1_c05130 0.51 -0.9 506,235 + PGA1_c05130 0.54 +0.6 506,243 - PGA1_c05130 0.55 -0.4 506,243 - PGA1_c05130 0.55 +0.7 506,243 - PGA1_c05130 0.55 +0.9 506,286 + PGA1_c05130 0.58 +0.5 506,286 + PGA1_c05130 0.58 +0.2 506,291 + PGA1_c05130 0.58 +0.5 506,294 - PGA1_c05130 0.58 +0.4 506,294 - PGA1_c05130 0.58 +0.5 506,299 - PGA1_c05130 0.59 -0.5 506,299 - PGA1_c05130 0.59 -0.1 506,299 - PGA1_c05130 0.59 -0.6 506,299 - PGA1_c05130 0.59 +0.3 506,299 - PGA1_c05130 0.59 -2.7 506,300 - PGA1_c05130 0.59 +1.1 506,374 - PGA1_c05130 0.64 -0.1 506,391 + PGA1_c05130 0.65 +1.3 506,416 + PGA1_c05130 0.67 +1.1
Or see this region's nucleotide sequence