Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05100

Experiment: m.b. Gentamicin 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05090 and PGA1_c05100 are separated by 27 nucleotidesPGA1_c05100 and PGA1_c05110 are separated by 161 nucleotides PGA1_c05090: PGA1_c05090 - putative glycosyl transferase, at 501,768 to 502,712 _c05090 PGA1_c05100: PGA1_c05100 - transcriptional regulator, GntR type, at 502,740 to 503,402 _c05100 PGA1_c05110: PGA1_c05110 - dihydrodipicolinate synthase domain-containing protein, at 503,564 to 504,523 _c05110 Position (kb) 502 503 504Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 501.747 kb on + strandat 501.760 kb on - strandat 501.792 kb on - strandat 501.792 kb on - strandat 501.802 kb on + strandat 501.810 kb on + strandat 501.810 kb on + strandat 501.810 kb on + strandat 501.810 kb on - strandat 501.810 kb on - strandat 501.818 kb on - strandat 501.818 kb on - strandat 501.828 kb on - strandat 501.892 kb on + strand, within PGA1_c05090at 501.899 kb on + strand, within PGA1_c05090at 501.938 kb on + strand, within PGA1_c05090at 501.945 kb on + strand, within PGA1_c05090at 501.945 kb on + strand, within PGA1_c05090at 501.945 kb on + strand, within PGA1_c05090at 501.953 kb on - strand, within PGA1_c05090at 501.963 kb on - strand, within PGA1_c05090at 502.012 kb on + strand, within PGA1_c05090at 502.064 kb on - strand, within PGA1_c05090at 502.066 kb on - strand, within PGA1_c05090at 502.068 kb on + strand, within PGA1_c05090at 502.090 kb on + strand, within PGA1_c05090at 502.090 kb on + strand, within PGA1_c05090at 502.090 kb on + strand, within PGA1_c05090at 502.090 kb on + strand, within PGA1_c05090at 502.090 kb on + strand, within PGA1_c05090at 502.098 kb on - strand, within PGA1_c05090at 502.098 kb on - strand, within PGA1_c05090at 502.127 kb on - strand, within PGA1_c05090at 502.285 kb on + strand, within PGA1_c05090at 502.285 kb on + strand, within PGA1_c05090at 502.286 kb on + strand, within PGA1_c05090at 502.291 kb on + strand, within PGA1_c05090at 502.294 kb on - strand, within PGA1_c05090at 502.294 kb on - strand, within PGA1_c05090at 502.294 kb on - strand, within PGA1_c05090at 502.357 kb on + strand, within PGA1_c05090at 502.357 kb on + strand, within PGA1_c05090at 502.357 kb on + strand, within PGA1_c05090at 502.394 kb on + strand, within PGA1_c05090at 502.399 kb on + strand, within PGA1_c05090at 502.399 kb on + strand, within PGA1_c05090at 502.399 kb on + strand, within PGA1_c05090at 502.399 kb on + strand, within PGA1_c05090at 502.399 kb on + strand, within PGA1_c05090at 502.399 kb on + strand, within PGA1_c05090at 502.399 kb on + strand, within PGA1_c05090at 502.399 kb on + strand, within PGA1_c05090at 502.399 kb on + strand, within PGA1_c05090at 502.404 kb on + strand, within PGA1_c05090at 502.404 kb on + strand, within PGA1_c05090at 502.404 kb on + strand, within PGA1_c05090at 502.407 kb on - strand, within PGA1_c05090at 502.407 kb on - strand, within PGA1_c05090at 502.407 kb on - strand, within PGA1_c05090at 502.407 kb on - strand, within PGA1_c05090at 502.407 kb on - strand, within PGA1_c05090at 502.407 kb on - strand, within PGA1_c05090at 502.407 kb on - strand, within PGA1_c05090at 502.407 kb on - strand, within PGA1_c05090at 502.407 kb on - strand, within PGA1_c05090at 502.407 kb on - strand, within PGA1_c05090at 502.407 kb on - strand, within PGA1_c05090at 502.409 kb on + strand, within PGA1_c05090at 502.409 kb on + strand, within PGA1_c05090at 502.409 kb on + strand, within PGA1_c05090at 502.409 kb on + strand, within PGA1_c05090at 502.409 kb on + strand, within PGA1_c05090at 502.409 kb on + strand, within PGA1_c05090at 502.417 kb on - strand, within PGA1_c05090at 502.417 kb on - strand, within PGA1_c05090at 502.417 kb on - strand, within PGA1_c05090at 502.417 kb on - strand, within PGA1_c05090at 502.417 kb on - strand, within PGA1_c05090at 502.417 kb on - strand, within PGA1_c05090at 502.417 kb on - strand, within PGA1_c05090at 502.417 kb on - strand, within PGA1_c05090at 502.417 kb on - strand, within PGA1_c05090at 502.417 kb on - strand, within PGA1_c05090at 502.417 kb on - strand, within PGA1_c05090at 502.643 kb on + strandat 502.651 kb on - strandat 502.651 kb on - strandat 502.660 kb on + strandat 502.660 kb on + strandat 502.697 kb on + strandat 502.722 kb on - strandat 502.745 kb on - strandat 502.751 kb on + strandat 502.751 kb on - strandat 502.759 kb on - strandat 502.759 kb on - strandat 502.783 kb on + strandat 502.808 kb on - strand, within PGA1_c05100at 502.810 kb on + strand, within PGA1_c05100at 502.825 kb on - strand, within PGA1_c05100at 502.864 kb on + strand, within PGA1_c05100at 502.872 kb on - strand, within PGA1_c05100at 502.872 kb on - strand, within PGA1_c05100at 502.890 kb on - strand, within PGA1_c05100at 502.958 kb on + strand, within PGA1_c05100at 503.016 kb on + strand, within PGA1_c05100at 503.017 kb on - strand, within PGA1_c05100at 503.019 kb on - strand, within PGA1_c05100at 503.019 kb on - strand, within PGA1_c05100at 503.053 kb on - strand, within PGA1_c05100at 503.067 kb on + strand, within PGA1_c05100at 503.096 kb on - strand, within PGA1_c05100at 503.118 kb on + strand, within PGA1_c05100at 503.118 kb on + strand, within PGA1_c05100at 503.118 kb on + strand, within PGA1_c05100at 503.177 kb on + strand, within PGA1_c05100at 503.185 kb on + strand, within PGA1_c05100at 503.193 kb on + strand, within PGA1_c05100at 503.200 kb on + strand, within PGA1_c05100at 503.321 kb on + strand, within PGA1_c05100at 503.337 kb on - strandat 503.371 kb on + strandat 503.420 kb on - strandat 503.420 kb on - strandat 503.422 kb on + strandat 503.441 kb on - strandat 503.441 kb on - strandat 503.510 kb on + strandat 503.518 kb on - strandat 503.544 kb on + strandat 503.555 kb on + strandat 503.571 kb on + strandat 503.607 kb on - strandat 503.619 kb on - strandat 503.624 kb on - strandat 503.690 kb on - strand, within PGA1_c05110at 503.692 kb on + strand, within PGA1_c05110at 503.692 kb on + strand, within PGA1_c05110at 503.692 kb on + strand, within PGA1_c05110at 503.692 kb on + strand, within PGA1_c05110at 503.700 kb on - strand, within PGA1_c05110at 503.700 kb on - strand, within PGA1_c05110at 503.700 kb on - strand, within PGA1_c05110at 503.816 kb on - strand, within PGA1_c05110at 503.816 kb on - strand, within PGA1_c05110at 503.816 kb on - strand, within PGA1_c05110at 503.843 kb on + strand, within PGA1_c05110at 503.862 kb on + strand, within PGA1_c05110at 503.862 kb on + strand, within PGA1_c05110at 503.870 kb on - strand, within PGA1_c05110at 503.870 kb on - strand, within PGA1_c05110at 503.870 kb on - strand, within PGA1_c05110at 503.870 kb on - strand, within PGA1_c05110at 503.943 kb on - strand, within PGA1_c05110at 503.974 kb on - strand, within PGA1_c05110at 504.022 kb on + strand, within PGA1_c05110at 504.048 kb on + strand, within PGA1_c05110at 504.048 kb on + strand, within PGA1_c05110at 504.048 kb on + strand, within PGA1_c05110at 504.056 kb on + strand, within PGA1_c05110at 504.056 kb on - strand, within PGA1_c05110at 504.056 kb on - strand, within PGA1_c05110at 504.056 kb on - strand, within PGA1_c05110at 504.077 kb on - strand, within PGA1_c05110at 504.104 kb on + strand, within PGA1_c05110at 504.104 kb on + strand, within PGA1_c05110at 504.147 kb on + strand, within PGA1_c05110at 504.157 kb on - strand, within PGA1_c05110at 504.221 kb on + strand, within PGA1_c05110at 504.245 kb on - strand, within PGA1_c05110at 504.292 kb on + strand, within PGA1_c05110at 504.292 kb on + strand, within PGA1_c05110at 504.313 kb on + strand, within PGA1_c05110at 504.321 kb on + strand, within PGA1_c05110at 504.321 kb on + strand, within PGA1_c05110at 504.329 kb on - strand, within PGA1_c05110at 504.383 kb on + strand, within PGA1_c05110

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.002 mg/ml
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501,747 + -0.2
501,760 - -1.4
501,792 - -0.2
501,792 - +0.7
501,802 + -1.7
501,810 + -0.3
501,810 + -0.7
501,810 + -0.4
501,810 - -0.4
501,810 - -1.3
501,818 - -0.7
501,818 - -0.3
501,828 - +0.2
501,892 + PGA1_c05090 0.13 -0.7
501,899 + PGA1_c05090 0.14 -0.5
501,938 + PGA1_c05090 0.18 +1.3
501,945 + PGA1_c05090 0.19 -1.1
501,945 + PGA1_c05090 0.19 -0.3
501,945 + PGA1_c05090 0.19 -0.5
501,953 - PGA1_c05090 0.20 +0.5
501,963 - PGA1_c05090 0.21 -1.1
502,012 + PGA1_c05090 0.26 +0.0
502,064 - PGA1_c05090 0.31 -1.6
502,066 - PGA1_c05090 0.32 -0.7
502,068 + PGA1_c05090 0.32 -0.3
502,090 + PGA1_c05090 0.34 -3.5
502,090 + PGA1_c05090 0.34 -1.2
502,090 + PGA1_c05090 0.34 -0.3
502,090 + PGA1_c05090 0.34 +0.1
502,090 + PGA1_c05090 0.34 +0.3
502,098 - PGA1_c05090 0.35 -1.0
502,098 - PGA1_c05090 0.35 -2.7
502,127 - PGA1_c05090 0.38 -0.5
502,285 + PGA1_c05090 0.55 -1.8
502,285 + PGA1_c05090 0.55 +1.1
502,286 + PGA1_c05090 0.55 -0.1
502,291 + PGA1_c05090 0.55 +1.0
502,294 - PGA1_c05090 0.56 +0.4
502,294 - PGA1_c05090 0.56 +0.4
502,294 - PGA1_c05090 0.56 -1.3
502,357 + PGA1_c05090 0.62 +0.5
502,357 + PGA1_c05090 0.62 -0.3
502,357 + PGA1_c05090 0.62 +0.0
502,394 + PGA1_c05090 0.66 -2.0
502,399 + PGA1_c05090 0.67 -2.0
502,399 + PGA1_c05090 0.67 -1.8
502,399 + PGA1_c05090 0.67 -1.5
502,399 + PGA1_c05090 0.67 -0.1
502,399 + PGA1_c05090 0.67 -0.7
502,399 + PGA1_c05090 0.67 -1.2
502,399 + PGA1_c05090 0.67 -2.5
502,399 + PGA1_c05090 0.67 -2.5
502,399 + PGA1_c05090 0.67 -1.6
502,404 + PGA1_c05090 0.67 -0.3
502,404 + PGA1_c05090 0.67 +0.2
502,404 + PGA1_c05090 0.67 -0.7
502,407 - PGA1_c05090 0.68 +0.6
502,407 - PGA1_c05090 0.68 +0.0
502,407 - PGA1_c05090 0.68 -1.8
502,407 - PGA1_c05090 0.68 -1.1
502,407 - PGA1_c05090 0.68 -0.5
502,407 - PGA1_c05090 0.68 -0.3
502,407 - PGA1_c05090 0.68 -0.0
502,407 - PGA1_c05090 0.68 -0.0
502,407 - PGA1_c05090 0.68 -0.2
502,407 - PGA1_c05090 0.68 +0.4
502,407 - PGA1_c05090 0.68 -0.1
502,409 + PGA1_c05090 0.68 -0.8
502,409 + PGA1_c05090 0.68 -1.6
502,409 + PGA1_c05090 0.68 -2.1
502,409 + PGA1_c05090 0.68 +2.7
502,409 + PGA1_c05090 0.68 +0.5
502,409 + PGA1_c05090 0.68 +0.4
502,417 - PGA1_c05090 0.69 +0.9
502,417 - PGA1_c05090 0.69 -0.6
502,417 - PGA1_c05090 0.69 +0.3
502,417 - PGA1_c05090 0.69 -0.1
502,417 - PGA1_c05090 0.69 +1.3
502,417 - PGA1_c05090 0.69 -0.6
502,417 - PGA1_c05090 0.69 -3.1
502,417 - PGA1_c05090 0.69 +0.9
502,417 - PGA1_c05090 0.69 -0.7
502,417 - PGA1_c05090 0.69 +0.4
502,417 - PGA1_c05090 0.69 -0.4
502,643 + -0.4
502,651 - -0.1
502,651 - +0.2
502,660 + -1.1
502,660 + +0.5
502,697 + -0.7
502,722 - +1.3
502,745 - -0.8
502,751 + -1.8
502,751 - -0.4
502,759 - +0.3
502,759 - -0.3
502,783 + -0.1
502,808 - PGA1_c05100 0.10 +1.0
502,810 + PGA1_c05100 0.11 -0.0
502,825 - PGA1_c05100 0.13 +1.1
502,864 + PGA1_c05100 0.19 -0.3
502,872 - PGA1_c05100 0.20 +0.4
502,872 - PGA1_c05100 0.20 +0.9
502,890 - PGA1_c05100 0.23 +0.2
502,958 + PGA1_c05100 0.33 -0.3
503,016 + PGA1_c05100 0.42 +0.3
503,017 - PGA1_c05100 0.42 -0.6
503,019 - PGA1_c05100 0.42 +0.5
503,019 - PGA1_c05100 0.42 +1.1
503,053 - PGA1_c05100 0.47 +0.8
503,067 + PGA1_c05100 0.49 +0.9
503,096 - PGA1_c05100 0.54 +0.1
503,118 + PGA1_c05100 0.57 -0.1
503,118 + PGA1_c05100 0.57 +1.1
503,118 + PGA1_c05100 0.57 +0.1
503,177 + PGA1_c05100 0.66 +0.9
503,185 + PGA1_c05100 0.67 +1.2
503,193 + PGA1_c05100 0.68 -1.7
503,200 + PGA1_c05100 0.69 +0.4
503,321 + PGA1_c05100 0.88 +0.6
503,337 - +1.0
503,371 + -0.0
503,420 - +3.0
503,420 - -1.7
503,422 + +0.5
503,441 - +0.1
503,441 - +0.8
503,510 + -0.9
503,518 - -0.1
503,544 + +0.2
503,555 + -0.6
503,571 + -0.2
503,607 - +0.1
503,619 - -0.8
503,624 - -0.3
503,690 - PGA1_c05110 0.13 -0.7
503,692 + PGA1_c05110 0.13 +0.6
503,692 + PGA1_c05110 0.13 -1.9
503,692 + PGA1_c05110 0.13 -1.3
503,692 + PGA1_c05110 0.13 +1.2
503,700 - PGA1_c05110 0.14 -1.2
503,700 - PGA1_c05110 0.14 -0.1
503,700 - PGA1_c05110 0.14 -0.6
503,816 - PGA1_c05110 0.26 -0.5
503,816 - PGA1_c05110 0.26 +0.4
503,816 - PGA1_c05110 0.26 -0.9
503,843 + PGA1_c05110 0.29 +0.6
503,862 + PGA1_c05110 0.31 -0.6
503,862 + PGA1_c05110 0.31 -1.9
503,870 - PGA1_c05110 0.32 +0.7
503,870 - PGA1_c05110 0.32 -1.5
503,870 - PGA1_c05110 0.32 +0.1
503,870 - PGA1_c05110 0.32 +0.2
503,943 - PGA1_c05110 0.39 -1.5
503,974 - PGA1_c05110 0.43 +1.6
504,022 + PGA1_c05110 0.48 +0.7
504,048 + PGA1_c05110 0.50 +0.5
504,048 + PGA1_c05110 0.50 +1.0
504,048 + PGA1_c05110 0.50 +0.9
504,056 + PGA1_c05110 0.51 +1.6
504,056 - PGA1_c05110 0.51 +0.6
504,056 - PGA1_c05110 0.51 -1.1
504,056 - PGA1_c05110 0.51 +0.0
504,077 - PGA1_c05110 0.53 -0.0
504,104 + PGA1_c05110 0.56 +0.3
504,104 + PGA1_c05110 0.56 -1.2
504,147 + PGA1_c05110 0.61 -0.3
504,157 - PGA1_c05110 0.62 +0.3
504,221 + PGA1_c05110 0.68 -0.5
504,245 - PGA1_c05110 0.71 +0.3
504,292 + PGA1_c05110 0.76 +0.3
504,292 + PGA1_c05110 0.76 -0.9
504,313 + PGA1_c05110 0.78 +2.4
504,321 + PGA1_c05110 0.79 -1.1
504,321 + PGA1_c05110 0.79 -0.2
504,329 - PGA1_c05110 0.80 +1.4
504,383 + PGA1_c05110 0.85 +0.5

Or see this region's nucleotide sequence