Experiment: m.b. Gentamicin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04790 and PGA1_c04800 are separated by 92 nucleotides PGA1_c04800 and PGA1_c04810 are separated by 133 nucleotides PGA1_c04810 and PGA1_c04820 overlap by 4 nucleotides PGA1_c04820 and PGA1_c04830 are separated by 326 nucleotides
PGA1_c04790: PGA1_c04790 - Clp protease., at 471,166 to 471,876
_c04790
PGA1_c04800: PGA1_c04800 - tRNA (guanine-N(7)-)-methyltransferase TrmB, at 471,969 to 472,733
_c04800
PGA1_c04810: PGA1_c04810 - 3-phosphoshikimate 1-carboxyvinyltransferase AroA, at 472,867 to 474,216
_c04810
PGA1_c04820: PGA1_c04820 - cytidylate kinase Cmk, at 474,213 to 474,818
_c04820
PGA1_c04830: PGA1_c04830 - 30S ribosomal protein S1, at 475,145 to 476,824
_c04830
Position (kb) 472
473
474
475 Strain fitness (log2 ratio) -2
-1
0
1
2 at 471.898 kb on + strand at 471.938 kb on + strand at 471.946 kb on - strand at 471.988 kb on - strand at 472.019 kb on - strand at 472.035 kb on + strand at 472.073 kb on + strand, within PGA1_c04800 at 472.081 kb on - strand, within PGA1_c04800 at 472.081 kb on - strand, within PGA1_c04800 at 472.106 kb on + strand, within PGA1_c04800 at 472.161 kb on - strand, within PGA1_c04800 at 472.207 kb on + strand, within PGA1_c04800 at 472.222 kb on - strand, within PGA1_c04800 at 472.225 kb on + strand, within PGA1_c04800 at 472.248 kb on + strand, within PGA1_c04800 at 472.248 kb on + strand, within PGA1_c04800 at 472.294 kb on + strand, within PGA1_c04800 at 472.302 kb on - strand, within PGA1_c04800 at 472.304 kb on - strand, within PGA1_c04800 at 472.310 kb on - strand, within PGA1_c04800 at 472.310 kb on - strand, within PGA1_c04800 at 472.315 kb on + strand, within PGA1_c04800 at 472.361 kb on + strand, within PGA1_c04800 at 472.369 kb on - strand, within PGA1_c04800 at 472.392 kb on - strand, within PGA1_c04800 at 472.405 kb on + strand, within PGA1_c04800 at 472.436 kb on + strand, within PGA1_c04800 at 472.436 kb on + strand, within PGA1_c04800 at 472.441 kb on + strand, within PGA1_c04800 at 472.441 kb on + strand, within PGA1_c04800 at 472.444 kb on - strand, within PGA1_c04800 at 472.444 kb on - strand, within PGA1_c04800 at 472.444 kb on - strand, within PGA1_c04800 at 472.449 kb on - strand, within PGA1_c04800 at 472.449 kb on - strand, within PGA1_c04800 at 472.449 kb on - strand, within PGA1_c04800 at 472.453 kb on + strand, within PGA1_c04800 at 472.497 kb on + strand, within PGA1_c04800 at 472.683 kb on + strand at 472.727 kb on + strand at 472.727 kb on + strand at 472.727 kb on + strand at 472.746 kb on + strand at 472.746 kb on + strand at 472.749 kb on - strand at 472.754 kb on - strand at 472.754 kb on - strand at 472.754 kb on - strand at 472.763 kb on + strand at 472.763 kb on + strand at 472.771 kb on - strand at 472.771 kb on - strand at 472.771 kb on - strand at 474.825 kb on - strand at 474.865 kb on + strand at 474.875 kb on + strand at 474.926 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.002 mg/ml remove 471,898 + +0.2 471,938 + +0.7 471,946 - +0.6 471,988 - -1.1 472,019 - +0.5 472,035 + +0.2 472,073 + PGA1_c04800 0.14 -0.5 472,081 - PGA1_c04800 0.15 +1.1 472,081 - PGA1_c04800 0.15 -0.3 472,106 + PGA1_c04800 0.18 +0.9 472,161 - PGA1_c04800 0.25 -0.1 472,207 + PGA1_c04800 0.31 +1.3 472,222 - PGA1_c04800 0.33 -1.5 472,225 + PGA1_c04800 0.33 +0.8 472,248 + PGA1_c04800 0.36 +0.5 472,248 + PGA1_c04800 0.36 -0.9 472,294 + PGA1_c04800 0.42 +0.9 472,302 - PGA1_c04800 0.44 -0.3 472,304 - PGA1_c04800 0.44 -1.5 472,310 - PGA1_c04800 0.45 +1.9 472,310 - PGA1_c04800 0.45 +0.1 472,315 + PGA1_c04800 0.45 +0.5 472,361 + PGA1_c04800 0.51 -0.1 472,369 - PGA1_c04800 0.52 +0.2 472,392 - PGA1_c04800 0.55 +0.8 472,405 + PGA1_c04800 0.57 +1.5 472,436 + PGA1_c04800 0.61 -0.5 472,436 + PGA1_c04800 0.61 +0.6 472,441 + PGA1_c04800 0.62 -2.1 472,441 + PGA1_c04800 0.62 +0.6 472,444 - PGA1_c04800 0.62 -0.3 472,444 - PGA1_c04800 0.62 +0.6 472,444 - PGA1_c04800 0.62 -0.1 472,449 - PGA1_c04800 0.63 +0.0 472,449 - PGA1_c04800 0.63 +0.5 472,449 - PGA1_c04800 0.63 +0.2 472,453 + PGA1_c04800 0.63 -0.4 472,497 + PGA1_c04800 0.69 -0.4 472,683 + +0.9 472,727 + -0.2 472,727 + -2.5 472,727 + +0.9 472,746 + +0.3 472,746 + -0.5 472,749 - +0.2 472,754 - +0.2 472,754 - +1.9 472,754 - -0.7 472,763 + +1.9 472,763 + -0.6 472,771 - -0.3 472,771 - +0.6 472,771 - +0.2 474,825 - -0.5 474,865 + -1.8 474,875 + -0.9 474,926 - +0.3
Or see this region's nucleotide sequence