Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_406 and HP15_407 are separated by 185 nucleotides HP15_407 and HP15_408 are separated by 57 nucleotides
HP15_406: HP15_406 - excinuclease ABC, ATPase subunit (A), at 399,903 to 402,743
_406
HP15_407: HP15_407 - transporter, major facilitator family, at 402,929 to 404,299
_407
HP15_408: HP15_408 - single-stranded DNA-binding protein, at 404,357 to 404,881
_408
Position (kb) 402
403
404
405 Strain fitness (log2 ratio) -2
-1
0
1 at 401.969 kb on + strand, within HP15_406 at 402.022 kb on - strand, within HP15_406 at 402.047 kb on + strand, within HP15_406 at 402.066 kb on + strand, within HP15_406 at 402.101 kb on + strand, within HP15_406 at 402.126 kb on - strand, within HP15_406 at 402.126 kb on - strand, within HP15_406 at 402.144 kb on + strand, within HP15_406 at 402.152 kb on - strand, within HP15_406 at 402.152 kb on - strand, within HP15_406 at 402.152 kb on - strand, within HP15_406 at 402.227 kb on - strand, within HP15_406 at 402.380 kb on - strand, within HP15_406 at 402.473 kb on - strand at 402.648 kb on - strand at 402.702 kb on - strand at 402.712 kb on - strand at 402.882 kb on - strand at 402.916 kb on - strand at 402.953 kb on + strand at 402.987 kb on + strand at 402.995 kb on - strand at 402.995 kb on - strand at 403.005 kb on - strand at 403.034 kb on + strand at 403.042 kb on - strand at 403.042 kb on - strand at 403.043 kb on + strand at 403.077 kb on - strand, within HP15_407 at 403.080 kb on + strand, within HP15_407 at 403.092 kb on + strand, within HP15_407 at 403.210 kb on - strand, within HP15_407 at 403.241 kb on + strand, within HP15_407 at 403.289 kb on + strand, within HP15_407 at 403.297 kb on - strand, within HP15_407 at 403.297 kb on - strand, within HP15_407 at 403.307 kb on + strand, within HP15_407 at 403.312 kb on + strand, within HP15_407 at 403.395 kb on + strand, within HP15_407 at 403.425 kb on + strand, within HP15_407 at 403.523 kb on + strand, within HP15_407 at 403.533 kb on - strand, within HP15_407 at 403.595 kb on - strand, within HP15_407 at 403.743 kb on + strand, within HP15_407 at 403.808 kb on + strand, within HP15_407 at 403.930 kb on + strand, within HP15_407 at 403.965 kb on - strand, within HP15_407 at 403.970 kb on + strand, within HP15_407 at 404.031 kb on + strand, within HP15_407 at 404.220 kb on + strand at 404.343 kb on + strand at 405.149 kb on + strand at 405.163 kb on + strand at 405.171 kb on - strand at 405.171 kb on - strand at 405.240 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 401,969 + HP15_406 0.73 -1.4 402,022 - HP15_406 0.75 +0.3 402,047 + HP15_406 0.75 +0.2 402,066 + HP15_406 0.76 +1.4 402,101 + HP15_406 0.77 +0.0 402,126 - HP15_406 0.78 +0.8 402,126 - HP15_406 0.78 +0.5 402,144 + HP15_406 0.79 +0.1 402,152 - HP15_406 0.79 -0.2 402,152 - HP15_406 0.79 -0.2 402,152 - HP15_406 0.79 +0.6 402,227 - HP15_406 0.82 +0.1 402,380 - HP15_406 0.87 +0.7 402,473 - -0.1 402,648 - +0.5 402,702 - +0.4 402,712 - -0.1 402,882 - +0.2 402,916 - +1.1 402,953 + +0.2 402,987 + -1.0 402,995 - -0.4 402,995 - -0.2 403,005 - -0.1 403,034 + -0.6 403,042 - -1.4 403,042 - -1.0 403,043 + -1.3 403,077 - HP15_407 0.11 -1.1 403,080 + HP15_407 0.11 -0.1 403,092 + HP15_407 0.12 -0.8 403,210 - HP15_407 0.20 -0.4 403,241 + HP15_407 0.23 -0.3 403,289 + HP15_407 0.26 -1.8 403,297 - HP15_407 0.27 +1.1 403,297 - HP15_407 0.27 -1.8 403,307 + HP15_407 0.28 -2.0 403,312 + HP15_407 0.28 +0.9 403,395 + HP15_407 0.34 -1.2 403,425 + HP15_407 0.36 -1.4 403,523 + HP15_407 0.43 -1.7 403,533 - HP15_407 0.44 -0.7 403,595 - HP15_407 0.49 -0.5 403,743 + HP15_407 0.59 -0.8 403,808 + HP15_407 0.64 +1.2 403,930 + HP15_407 0.73 +0.3 403,965 - HP15_407 0.76 -1.2 403,970 + HP15_407 0.76 -0.0 404,031 + HP15_407 0.80 -1.1 404,220 + +0.4 404,343 + +0.5 405,149 + -0.1 405,163 + +0.7 405,171 - +1.1 405,171 - +0.4 405,240 - +0.4
Or see this region's nucleotide sequence