Experiment: m.b. Gentamicin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01670 and PGA1_262p01680 are separated by 57 nucleotides PGA1_262p01680 and PGA1_262p01690 are separated by 107 nucleotides
PGA1_262p01670: PGA1_262p01670 - putative transcriptional regulator, LysR family, at 182,605 to 183,483
_262p01670
PGA1_262p01680: PGA1_262p01680 - hypothetical protein, at 183,541 to 184,329
_262p01680
PGA1_262p01690: PGA1_262p01690 - peptidase S15, at 184,437 to 186,416
_262p01690
Position (kb) 183
184
185 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 182.675 kb on + strand at 182.712 kb on - strand, within PGA1_262p01670 at 182.721 kb on + strand, within PGA1_262p01670 at 182.721 kb on + strand, within PGA1_262p01670 at 182.736 kb on + strand, within PGA1_262p01670 at 182.749 kb on + strand, within PGA1_262p01670 at 182.879 kb on + strand, within PGA1_262p01670 at 182.887 kb on - strand, within PGA1_262p01670 at 182.925 kb on - strand, within PGA1_262p01670 at 182.960 kb on + strand, within PGA1_262p01670 at 183.106 kb on - strand, within PGA1_262p01670 at 183.112 kb on - strand, within PGA1_262p01670 at 183.156 kb on - strand, within PGA1_262p01670 at 183.156 kb on - strand, within PGA1_262p01670 at 183.218 kb on - strand, within PGA1_262p01670 at 183.223 kb on - strand, within PGA1_262p01670 at 183.243 kb on - strand, within PGA1_262p01670 at 183.257 kb on + strand, within PGA1_262p01670 at 183.257 kb on + strand, within PGA1_262p01670 at 183.262 kb on + strand, within PGA1_262p01670 at 183.265 kb on - strand, within PGA1_262p01670 at 183.265 kb on - strand, within PGA1_262p01670 at 183.609 kb on + strand at 183.617 kb on - strand at 183.734 kb on - strand, within PGA1_262p01680 at 183.734 kb on - strand, within PGA1_262p01680 at 183.762 kb on + strand, within PGA1_262p01680 at 183.775 kb on - strand, within PGA1_262p01680 at 183.775 kb on - strand, within PGA1_262p01680 at 183.803 kb on - strand, within PGA1_262p01680 at 183.960 kb on + strand, within PGA1_262p01680 at 183.960 kb on + strand, within PGA1_262p01680 at 183.968 kb on - strand, within PGA1_262p01680 at 184.074 kb on + strand, within PGA1_262p01680 at 184.270 kb on + strand at 184.570 kb on - strand at 184.722 kb on + strand, within PGA1_262p01690 at 184.832 kb on + strand, within PGA1_262p01690 at 184.840 kb on - strand, within PGA1_262p01690 at 184.840 kb on - strand, within PGA1_262p01690 at 184.933 kb on + strand, within PGA1_262p01690 at 184.940 kb on - strand, within PGA1_262p01690 at 184.940 kb on - strand, within PGA1_262p01690 at 184.945 kb on - strand, within PGA1_262p01690 at 185.003 kb on - strand, within PGA1_262p01690 at 185.016 kb on + strand, within PGA1_262p01690 at 185.032 kb on - strand, within PGA1_262p01690 at 185.041 kb on + strand, within PGA1_262p01690 at 185.158 kb on + strand, within PGA1_262p01690 at 185.201 kb on - strand, within PGA1_262p01690 at 185.201 kb on - strand, within PGA1_262p01690 at 185.219 kb on + strand, within PGA1_262p01690 at 185.238 kb on - strand, within PGA1_262p01690 at 185.256 kb on - strand, within PGA1_262p01690 at 185.284 kb on - strand, within PGA1_262p01690 at 185.309 kb on + strand, within PGA1_262p01690 at 185.309 kb on + strand, within PGA1_262p01690
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.002 mg/ml remove 182,675 + +0.5 182,712 - PGA1_262p01670 0.12 -0.2 182,721 + PGA1_262p01670 0.13 +0.3 182,721 + PGA1_262p01670 0.13 -2.0 182,736 + PGA1_262p01670 0.15 -0.0 182,749 + PGA1_262p01670 0.16 +1.0 182,879 + PGA1_262p01670 0.31 -0.7 182,887 - PGA1_262p01670 0.32 +1.1 182,925 - PGA1_262p01670 0.36 -0.1 182,960 + PGA1_262p01670 0.40 -0.3 183,106 - PGA1_262p01670 0.57 -1.3 183,112 - PGA1_262p01670 0.58 +0.9 183,156 - PGA1_262p01670 0.63 -1.6 183,156 - PGA1_262p01670 0.63 +0.2 183,218 - PGA1_262p01670 0.70 -0.0 183,223 - PGA1_262p01670 0.70 -0.6 183,243 - PGA1_262p01670 0.73 -1.8 183,257 + PGA1_262p01670 0.74 -0.3 183,257 + PGA1_262p01670 0.74 -1.6 183,262 + PGA1_262p01670 0.75 -0.3 183,265 - PGA1_262p01670 0.75 -0.3 183,265 - PGA1_262p01670 0.75 +0.1 183,609 + +0.9 183,617 - -1.5 183,734 - PGA1_262p01680 0.24 -1.8 183,734 - PGA1_262p01680 0.24 +0.2 183,762 + PGA1_262p01680 0.28 -1.9 183,775 - PGA1_262p01680 0.30 +0.2 183,775 - PGA1_262p01680 0.30 -0.9 183,803 - PGA1_262p01680 0.33 +1.1 183,960 + PGA1_262p01680 0.53 -1.1 183,960 + PGA1_262p01680 0.53 -1.5 183,968 - PGA1_262p01680 0.54 +0.3 184,074 + PGA1_262p01680 0.68 -0.5 184,270 + +0.5 184,570 - +0.3 184,722 + PGA1_262p01690 0.14 +0.2 184,832 + PGA1_262p01690 0.20 -0.1 184,840 - PGA1_262p01690 0.20 -0.6 184,840 - PGA1_262p01690 0.20 -0.9 184,933 + PGA1_262p01690 0.25 -0.2 184,940 - PGA1_262p01690 0.25 +0.2 184,940 - PGA1_262p01690 0.25 +0.8 184,945 - PGA1_262p01690 0.26 +0.1 185,003 - PGA1_262p01690 0.29 +3.4 185,016 + PGA1_262p01690 0.29 -0.1 185,032 - PGA1_262p01690 0.30 -0.2 185,041 + PGA1_262p01690 0.31 -0.6 185,158 + PGA1_262p01690 0.36 -0.6 185,201 - PGA1_262p01690 0.39 +0.1 185,201 - PGA1_262p01690 0.39 +0.1 185,219 + PGA1_262p01690 0.39 -0.9 185,238 - PGA1_262p01690 0.40 +0.7 185,256 - PGA1_262p01690 0.41 +0.5 185,284 - PGA1_262p01690 0.43 -0.3 185,309 + PGA1_262p01690 0.44 -0.0 185,309 + PGA1_262p01690 0.44 -0.8
Or see this region's nucleotide sequence