Experiment: m.b. Gentamicin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01430 and PGA1_262p01440 are separated by 103 nucleotides PGA1_262p01440 and PGA1_262p01450 are separated by 62 nucleotides
PGA1_262p01430: PGA1_262p01430 - hypothetical protein, at 154,683 to 156,374
_262p01430
PGA1_262p01440: PGA1_262p01440 - BCCT transporter, at 156,478 to 158,022
_262p01440
PGA1_262p01450: PGA1_262p01450 - putative membrane dipeptidase, at 158,085 to 159,077
_262p01450
Position (kb) 156
157
158
159 Strain fitness (log2 ratio) -2
-1
0
1 at 155.479 kb on - strand, within PGA1_262p01430 at 155.509 kb on + strand, within PGA1_262p01430 at 155.517 kb on - strand, within PGA1_262p01430 at 155.527 kb on - strand, within PGA1_262p01430 at 155.678 kb on - strand, within PGA1_262p01430 at 155.798 kb on - strand, within PGA1_262p01430 at 155.877 kb on - strand, within PGA1_262p01430 at 155.991 kb on - strand, within PGA1_262p01430 at 156.028 kb on + strand, within PGA1_262p01430 at 156.081 kb on - strand, within PGA1_262p01430 at 156.091 kb on - strand, within PGA1_262p01430 at 156.091 kb on - strand, within PGA1_262p01430 at 156.105 kb on - strand, within PGA1_262p01430 at 156.119 kb on + strand, within PGA1_262p01430 at 156.207 kb on + strand at 156.207 kb on + strand at 156.215 kb on - strand at 156.299 kb on + strand at 156.412 kb on - strand at 156.445 kb on - strand at 156.491 kb on + strand at 156.495 kb on + strand at 156.547 kb on + strand at 156.633 kb on - strand, within PGA1_262p01440 at 156.660 kb on + strand, within PGA1_262p01440 at 157.022 kb on - strand, within PGA1_262p01440 at 157.093 kb on - strand, within PGA1_262p01440 at 157.215 kb on - strand, within PGA1_262p01440 at 157.344 kb on + strand, within PGA1_262p01440 at 157.464 kb on + strand, within PGA1_262p01440 at 157.469 kb on + strand, within PGA1_262p01440 at 157.469 kb on + strand, within PGA1_262p01440 at 157.535 kb on + strand, within PGA1_262p01440 at 157.762 kb on - strand, within PGA1_262p01440 at 157.831 kb on + strand, within PGA1_262p01440 at 157.928 kb on + strand at 157.928 kb on + strand at 157.936 kb on - strand at 157.936 kb on - strand at 157.936 kb on - strand at 157.936 kb on - strand at 157.987 kb on + strand at 157.997 kb on + strand at 158.055 kb on + strand at 158.055 kb on + strand at 158.088 kb on + strand at 158.215 kb on - strand, within PGA1_262p01450 at 158.345 kb on + strand, within PGA1_262p01450 at 158.525 kb on + strand, within PGA1_262p01450 at 158.533 kb on - strand, within PGA1_262p01450 at 158.533 kb on - strand, within PGA1_262p01450 at 158.555 kb on + strand, within PGA1_262p01450 at 158.607 kb on - strand, within PGA1_262p01450 at 158.786 kb on + strand, within PGA1_262p01450 at 158.786 kb on + strand, within PGA1_262p01450 at 158.895 kb on - strand, within PGA1_262p01450 at 158.945 kb on - strand, within PGA1_262p01450
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.002 mg/ml remove 155,479 - PGA1_262p01430 0.47 +0.4 155,509 + PGA1_262p01430 0.49 -0.5 155,517 - PGA1_262p01430 0.49 -0.5 155,527 - PGA1_262p01430 0.50 -2.0 155,678 - PGA1_262p01430 0.59 -0.7 155,798 - PGA1_262p01430 0.66 -0.7 155,877 - PGA1_262p01430 0.71 +1.0 155,991 - PGA1_262p01430 0.77 -0.1 156,028 + PGA1_262p01430 0.79 -0.3 156,081 - PGA1_262p01430 0.83 -0.3 156,091 - PGA1_262p01430 0.83 -0.7 156,091 - PGA1_262p01430 0.83 +0.2 156,105 - PGA1_262p01430 0.84 +1.5 156,119 + PGA1_262p01430 0.85 +0.2 156,207 + +0.5 156,207 + +0.2 156,215 - -0.3 156,299 + -0.8 156,412 - -1.0 156,445 - -0.3 156,491 + +0.7 156,495 + -1.0 156,547 + +0.8 156,633 - PGA1_262p01440 0.10 -0.4 156,660 + PGA1_262p01440 0.12 -1.0 157,022 - PGA1_262p01440 0.35 -1.6 157,093 - PGA1_262p01440 0.40 -1.8 157,215 - PGA1_262p01440 0.48 -0.9 157,344 + PGA1_262p01440 0.56 +0.0 157,464 + PGA1_262p01440 0.64 -0.3 157,469 + PGA1_262p01440 0.64 +0.5 157,469 + PGA1_262p01440 0.64 -0.8 157,535 + PGA1_262p01440 0.68 -0.0 157,762 - PGA1_262p01440 0.83 -1.5 157,831 + PGA1_262p01440 0.88 -1.0 157,928 + +0.8 157,928 + -2.6 157,936 - +1.4 157,936 - -0.3 157,936 - +0.6 157,936 - +0.2 157,987 + -1.8 157,997 + +1.1 158,055 + -0.6 158,055 + +0.4 158,088 + +0.4 158,215 - PGA1_262p01450 0.13 -1.0 158,345 + PGA1_262p01450 0.26 -0.8 158,525 + PGA1_262p01450 0.44 +0.1 158,533 - PGA1_262p01450 0.45 -1.2 158,533 - PGA1_262p01450 0.45 +0.3 158,555 + PGA1_262p01450 0.47 +0.4 158,607 - PGA1_262p01450 0.53 +0.8 158,786 + PGA1_262p01450 0.71 -0.3 158,786 + PGA1_262p01450 0.71 -1.5 158,895 - PGA1_262p01450 0.82 +0.2 158,945 - PGA1_262p01450 0.87 -0.8
Or see this region's nucleotide sequence