Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p01040

Experiment: m.b. Gentamicin 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p01030 and PGA1_262p01040 are separated by 151 nucleotidesPGA1_262p01040 and PGA1_262p01050 are separated by 528 nucleotides PGA1_262p01030: PGA1_262p01030 - dipeptide transport system permease protein DppB, at 112,606 to 113,586 _262p01030 PGA1_262p01040: PGA1_262p01040 - periplasmic dipeptide transport protein precursor (dipeptide-binding protein) (DBP), at 113,738 to 115,294 _262p01040 PGA1_262p01050: PGA1_262p01050 - Hemolysin-type calcium-binding repeat (2 copies)., at 115,823 to 116,746 _262p01050 Position (kb) 113 114 115 116Strain fitness (log2 ratio) -2 -1 0 1 2at 112.802 kb on + strand, within PGA1_262p01030at 112.802 kb on + strand, within PGA1_262p01030at 113.099 kb on - strand, within PGA1_262p01030at 113.297 kb on - strand, within PGA1_262p01030at 113.511 kb on - strandat 113.654 kb on + strandat 113.715 kb on - strandat 113.771 kb on + strandat 113.817 kb on + strandat 113.817 kb on + strandat 113.817 kb on + strandat 113.817 kb on + strandat 113.827 kb on + strandat 113.827 kb on + strandat 113.875 kb on + strandat 113.956 kb on + strand, within PGA1_262p01040at 113.981 kb on - strand, within PGA1_262p01040at 114.009 kb on - strand, within PGA1_262p01040at 114.099 kb on - strand, within PGA1_262p01040at 114.125 kb on + strand, within PGA1_262p01040at 114.643 kb on + strand, within PGA1_262p01040at 114.791 kb on + strand, within PGA1_262p01040at 114.906 kb on + strand, within PGA1_262p01040at 114.951 kb on - strand, within PGA1_262p01040at 115.033 kb on + strand, within PGA1_262p01040at 115.033 kb on - strand, within PGA1_262p01040at 115.158 kb on + strandat 115.166 kb on - strandat 115.166 kb on - strandat 115.352 kb on + strandat 115.477 kb on - strandat 115.524 kb on - strandat 115.637 kb on + strandat 115.722 kb on - strandat 115.846 kb on + strandat 115.846 kb on + strandat 115.854 kb on - strandat 115.857 kb on + strandat 115.912 kb on + strandat 115.938 kb on + strand, within PGA1_262p01050at 115.946 kb on - strand, within PGA1_262p01050at 115.948 kb on + strand, within PGA1_262p01050at 115.956 kb on - strand, within PGA1_262p01050at 116.090 kb on - strand, within PGA1_262p01050at 116.090 kb on - strand, within PGA1_262p01050at 116.114 kb on - strand, within PGA1_262p01050at 116.137 kb on - strand, within PGA1_262p01050at 116.191 kb on - strand, within PGA1_262p01050at 116.250 kb on - strand, within PGA1_262p01050

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.002 mg/ml
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112,802 + PGA1_262p01030 0.20 -0.9
112,802 + PGA1_262p01030 0.20 -0.5
113,099 - PGA1_262p01030 0.50 -1.6
113,297 - PGA1_262p01030 0.70 +0.9
113,511 - -0.3
113,654 + +0.1
113,715 - -1.0
113,771 + +1.1
113,817 + +0.4
113,817 + +1.5
113,817 + -0.6
113,817 + +0.2
113,827 + +1.4
113,827 + -1.2
113,875 + +1.1
113,956 + PGA1_262p01040 0.14 +1.0
113,981 - PGA1_262p01040 0.16 +0.2
114,009 - PGA1_262p01040 0.17 +0.7
114,099 - PGA1_262p01040 0.23 +0.5
114,125 + PGA1_262p01040 0.25 +0.3
114,643 + PGA1_262p01040 0.58 +1.9
114,791 + PGA1_262p01040 0.68 +1.1
114,906 + PGA1_262p01040 0.75 -0.5
114,951 - PGA1_262p01040 0.78 +1.1
115,033 + PGA1_262p01040 0.83 +1.1
115,033 - PGA1_262p01040 0.83 +0.0
115,158 + -0.1
115,166 - +0.5
115,166 - +0.5
115,352 + +1.4
115,477 - +0.2
115,524 - +0.0
115,637 + +0.8
115,722 - -1.9
115,846 + -0.2
115,846 + -0.9
115,854 - +0.3
115,857 + -1.9
115,912 + -1.3
115,938 + PGA1_262p01050 0.12 +0.4
115,946 - PGA1_262p01050 0.13 -0.7
115,948 + PGA1_262p01050 0.14 -0.1
115,956 - PGA1_262p01050 0.14 -0.5
116,090 - PGA1_262p01050 0.29 +0.0
116,090 - PGA1_262p01050 0.29 +1.0
116,114 - PGA1_262p01050 0.31 +1.5
116,137 - PGA1_262p01050 0.34 +1.2
116,191 - PGA1_262p01050 0.40 +0.8
116,250 - PGA1_262p01050 0.46 +0.4

Or see this region's nucleotide sequence