Experiment: m.b. Gentamicin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01030 and PGA1_262p01040 are separated by 151 nucleotides PGA1_262p01040 and PGA1_262p01050 are separated by 528 nucleotides
PGA1_262p01030: PGA1_262p01030 - dipeptide transport system permease protein DppB, at 112,606 to 113,586
_262p01030
PGA1_262p01040: PGA1_262p01040 - periplasmic dipeptide transport protein precursor (dipeptide-binding protein) (DBP), at 113,738 to 115,294
_262p01040
PGA1_262p01050: PGA1_262p01050 - Hemolysin-type calcium-binding repeat (2 copies)., at 115,823 to 116,746
_262p01050
Position (kb)
113
114
115
116 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 112.802 kb on + strand, within PGA1_262p01030 at 112.802 kb on + strand, within PGA1_262p01030 at 113.099 kb on - strand, within PGA1_262p01030 at 113.297 kb on - strand, within PGA1_262p01030 at 113.511 kb on - strand at 113.654 kb on + strand at 113.715 kb on - strand at 113.771 kb on + strand at 113.817 kb on + strand at 113.817 kb on + strand at 113.817 kb on + strand at 113.817 kb on + strand at 113.827 kb on + strand at 113.827 kb on + strand at 113.875 kb on + strand at 113.956 kb on + strand, within PGA1_262p01040 at 113.981 kb on - strand, within PGA1_262p01040 at 114.009 kb on - strand, within PGA1_262p01040 at 114.099 kb on - strand, within PGA1_262p01040 at 114.125 kb on + strand, within PGA1_262p01040 at 114.643 kb on + strand, within PGA1_262p01040 at 114.791 kb on + strand, within PGA1_262p01040 at 114.906 kb on + strand, within PGA1_262p01040 at 114.951 kb on - strand, within PGA1_262p01040 at 115.033 kb on + strand, within PGA1_262p01040 at 115.033 kb on - strand, within PGA1_262p01040 at 115.158 kb on + strand at 115.166 kb on - strand at 115.166 kb on - strand at 115.352 kb on + strand at 115.477 kb on - strand at 115.524 kb on - strand at 115.637 kb on + strand at 115.722 kb on - strand at 115.846 kb on + strand at 115.846 kb on + strand at 115.854 kb on - strand at 115.857 kb on + strand at 115.912 kb on + strand at 115.938 kb on + strand, within PGA1_262p01050 at 115.946 kb on - strand, within PGA1_262p01050 at 115.948 kb on + strand, within PGA1_262p01050 at 115.956 kb on - strand, within PGA1_262p01050 at 116.090 kb on - strand, within PGA1_262p01050 at 116.090 kb on - strand, within PGA1_262p01050 at 116.114 kb on - strand, within PGA1_262p01050 at 116.137 kb on - strand, within PGA1_262p01050 at 116.191 kb on - strand, within PGA1_262p01050 at 116.250 kb on - strand, within PGA1_262p01050
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.002 mg/ml remove 112,802 + PGA1_262p01030 0.20 -0.9 112,802 + PGA1_262p01030 0.20 -0.5 113,099 - PGA1_262p01030 0.50 -1.6 113,297 - PGA1_262p01030 0.70 +0.9 113,511 - -0.3 113,654 + +0.1 113,715 - -1.0 113,771 + +1.1 113,817 + +0.4 113,817 + +1.5 113,817 + -0.6 113,817 + +0.2 113,827 + +1.4 113,827 + -1.2 113,875 + +1.1 113,956 + PGA1_262p01040 0.14 +1.0 113,981 - PGA1_262p01040 0.16 +0.2 114,009 - PGA1_262p01040 0.17 +0.7 114,099 - PGA1_262p01040 0.23 +0.5 114,125 + PGA1_262p01040 0.25 +0.3 114,643 + PGA1_262p01040 0.58 +1.9 114,791 + PGA1_262p01040 0.68 +1.1 114,906 + PGA1_262p01040 0.75 -0.5 114,951 - PGA1_262p01040 0.78 +1.1 115,033 + PGA1_262p01040 0.83 +1.1 115,033 - PGA1_262p01040 0.83 +0.0 115,158 + -0.1 115,166 - +0.5 115,166 - +0.5 115,352 + +1.4 115,477 - +0.2 115,524 - +0.0 115,637 + +0.8 115,722 - -1.9 115,846 + -0.2 115,846 + -0.9 115,854 - +0.3 115,857 + -1.9 115,912 + -1.3 115,938 + PGA1_262p01050 0.12 +0.4 115,946 - PGA1_262p01050 0.13 -0.7 115,948 + PGA1_262p01050 0.14 -0.1 115,956 - PGA1_262p01050 0.14 -0.5 116,090 - PGA1_262p01050 0.29 +0.0 116,090 - PGA1_262p01050 0.29 +1.0 116,114 - PGA1_262p01050 0.31 +1.5 116,137 - PGA1_262p01050 0.34 +1.2 116,191 - PGA1_262p01050 0.40 +0.8 116,250 - PGA1_262p01050 0.46 +0.4
Or see this region's nucleotide sequence