Experiment: m.b. Gentamicin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00310 and PGA1_262p00320 overlap by 4 nucleotides PGA1_262p00320 and PGA1_262p00330 are separated by 13 nucleotides
PGA1_262p00310: PGA1_262p00310 - glutathione transport system permease protein GsiC, at 35,068 to 36,009
_262p00310
PGA1_262p00320: PGA1_262p00320 - ABC transporter, inner membrane component, at 36,006 to 36,872
_262p00320
PGA1_262p00330: PGA1_262p00330 - oligopeptide ABC transporter, ATP binding protein, at 36,886 to 37,884
_262p00330
Position (kb) 36
37 Strain fitness (log2 ratio) -2
-1
0
1 at 35.105 kb on - strand at 35.288 kb on - strand, within PGA1_262p00310 at 35.290 kb on + strand, within PGA1_262p00310 at 35.296 kb on - strand, within PGA1_262p00310 at 35.298 kb on - strand, within PGA1_262p00310 at 35.298 kb on - strand, within PGA1_262p00310 at 35.307 kb on - strand, within PGA1_262p00310 at 35.453 kb on + strand, within PGA1_262p00310 at 35.474 kb on - strand, within PGA1_262p00310 at 35.624 kb on + strand, within PGA1_262p00310 at 35.920 kb on + strand at 36.023 kb on + strand at 36.154 kb on + strand, within PGA1_262p00320 at 36.242 kb on - strand, within PGA1_262p00320 at 36.376 kb on - strand, within PGA1_262p00320 at 36.425 kb on - strand, within PGA1_262p00320 at 36.425 kb on - strand, within PGA1_262p00320 at 36.491 kb on - strand, within PGA1_262p00320 at 36.515 kb on - strand, within PGA1_262p00320 at 36.632 kb on - strand, within PGA1_262p00320 at 36.882 kb on + strand at 36.927 kb on + strand at 36.955 kb on + strand at 36.983 kb on + strand at 36.999 kb on + strand, within PGA1_262p00330 at 37.043 kb on - strand, within PGA1_262p00330 at 37.156 kb on + strand, within PGA1_262p00330 at 37.218 kb on + strand, within PGA1_262p00330 at 37.274 kb on - strand, within PGA1_262p00330 at 37.512 kb on - strand, within PGA1_262p00330 at 37.552 kb on + strand, within PGA1_262p00330 at 37.552 kb on + strand, within PGA1_262p00330 at 37.560 kb on - strand, within PGA1_262p00330 at 37.560 kb on - strand, within PGA1_262p00330 at 37.562 kb on + strand, within PGA1_262p00330 at 37.603 kb on - strand, within PGA1_262p00330 at 37.639 kb on - strand, within PGA1_262p00330 at 37.641 kb on + strand, within PGA1_262p00330 at 37.644 kb on - strand, within PGA1_262p00330 at 37.698 kb on + strand, within PGA1_262p00330 at 37.698 kb on + strand, within PGA1_262p00330 at 37.754 kb on + strand, within PGA1_262p00330
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.002 mg/ml remove 35,105 - -0.1 35,288 - PGA1_262p00310 0.23 -0.0 35,290 + PGA1_262p00310 0.24 -0.2 35,296 - PGA1_262p00310 0.24 -2.6 35,298 - PGA1_262p00310 0.24 +0.6 35,298 - PGA1_262p00310 0.24 +1.0 35,307 - PGA1_262p00310 0.25 +0.3 35,453 + PGA1_262p00310 0.41 -0.9 35,474 - PGA1_262p00310 0.43 +0.1 35,624 + PGA1_262p00310 0.59 -1.8 35,920 + +0.9 36,023 + +0.2 36,154 + PGA1_262p00320 0.17 +0.3 36,242 - PGA1_262p00320 0.27 +0.5 36,376 - PGA1_262p00320 0.43 -1.3 36,425 - PGA1_262p00320 0.48 -0.6 36,425 - PGA1_262p00320 0.48 -2.0 36,491 - PGA1_262p00320 0.56 +0.1 36,515 - PGA1_262p00320 0.59 -0.3 36,632 - PGA1_262p00320 0.72 -0.7 36,882 + +0.8 36,927 + -0.8 36,955 + -1.8 36,983 + -0.5 36,999 + PGA1_262p00330 0.11 -0.7 37,043 - PGA1_262p00330 0.16 +0.3 37,156 + PGA1_262p00330 0.27 -0.8 37,218 + PGA1_262p00330 0.33 +0.7 37,274 - PGA1_262p00330 0.39 -0.5 37,512 - PGA1_262p00330 0.63 +1.5 37,552 + PGA1_262p00330 0.67 +1.0 37,552 + PGA1_262p00330 0.67 -0.2 37,560 - PGA1_262p00330 0.67 -0.5 37,560 - PGA1_262p00330 0.67 +0.2 37,562 + PGA1_262p00330 0.68 +1.0 37,603 - PGA1_262p00330 0.72 -0.1 37,639 - PGA1_262p00330 0.75 -0.5 37,641 + PGA1_262p00330 0.76 -0.2 37,644 - PGA1_262p00330 0.76 -0.3 37,698 + PGA1_262p00330 0.81 +0.8 37,698 + PGA1_262p00330 0.81 -1.0 37,754 + PGA1_262p00330 0.87 -0.5
Or see this region's nucleotide sequence