Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p00150

Experiment: m.b. Gentamicin 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p00140 and PGA1_262p00150 are separated by 100 nucleotidesPGA1_262p00150 and PGA1_262p00160 are separated by 95 nucleotidesPGA1_262p00160 and PGA1_262p00170 overlap by 4 nucleotides PGA1_262p00140: PGA1_262p00140 - putative amino acid binding protein, at 16,729 to 17,889 _262p00140 PGA1_262p00150: PGA1_262p00150 - methyl-accepting chemotaxis protein, at 17,990 to 20,662 _262p00150 PGA1_262p00160: PGA1_262p00160 - Branched-chain amino acid transport protein (AzlD)., at 20,758 to 21,057 _262p00160 PGA1_262p00170: PGA1_262p00170 - Predicted branched-chain amino acid permease (azaleucine resistance), at 21,054 to 21,770 _262p00170 Position (kb) 17 18 19 20 21Strain fitness (log2 ratio) -2 -1 0 1 2at 17.034 kb on + strand, within PGA1_262p00140at 17.090 kb on - strand, within PGA1_262p00140at 17.261 kb on - strand, within PGA1_262p00140at 17.270 kb on + strand, within PGA1_262p00140at 17.288 kb on - strand, within PGA1_262p00140at 17.412 kb on + strand, within PGA1_262p00140at 17.414 kb on - strand, within PGA1_262p00140at 17.511 kb on - strand, within PGA1_262p00140at 17.539 kb on - strand, within PGA1_262p00140at 17.539 kb on - strand, within PGA1_262p00140at 17.665 kb on - strand, within PGA1_262p00140at 17.716 kb on + strand, within PGA1_262p00140at 17.716 kb on + strand, within PGA1_262p00140at 17.724 kb on - strand, within PGA1_262p00140at 17.777 kb on + strandat 18.087 kb on + strandat 18.120 kb on + strandat 18.310 kb on - strand, within PGA1_262p00150at 18.371 kb on - strand, within PGA1_262p00150at 18.471 kb on + strand, within PGA1_262p00150at 18.521 kb on - strand, within PGA1_262p00150at 18.567 kb on + strand, within PGA1_262p00150at 18.676 kb on - strand, within PGA1_262p00150at 18.768 kb on + strand, within PGA1_262p00150at 18.844 kb on - strand, within PGA1_262p00150at 18.883 kb on - strand, within PGA1_262p00150at 18.888 kb on + strand, within PGA1_262p00150at 18.898 kb on + strand, within PGA1_262p00150at 18.936 kb on - strand, within PGA1_262p00150at 18.952 kb on - strand, within PGA1_262p00150at 18.983 kb on + strand, within PGA1_262p00150at 19.019 kb on - strand, within PGA1_262p00150at 19.088 kb on + strand, within PGA1_262p00150at 19.144 kb on + strand, within PGA1_262p00150at 19.152 kb on + strand, within PGA1_262p00150at 19.214 kb on - strand, within PGA1_262p00150at 19.219 kb on - strand, within PGA1_262p00150at 19.322 kb on + strand, within PGA1_262p00150at 19.537 kb on + strand, within PGA1_262p00150at 19.547 kb on + strand, within PGA1_262p00150at 19.550 kb on - strand, within PGA1_262p00150at 19.555 kb on - strand, within PGA1_262p00150at 19.635 kb on - strand, within PGA1_262p00150at 19.674 kb on + strand, within PGA1_262p00150at 19.769 kb on - strand, within PGA1_262p00150at 19.772 kb on - strand, within PGA1_262p00150at 19.774 kb on - strand, within PGA1_262p00150at 19.796 kb on + strand, within PGA1_262p00150at 19.802 kb on + strand, within PGA1_262p00150at 19.817 kb on - strand, within PGA1_262p00150at 19.870 kb on - strand, within PGA1_262p00150at 20.035 kb on + strand, within PGA1_262p00150at 20.140 kb on + strand, within PGA1_262p00150at 20.329 kb on + strand, within PGA1_262p00150at 20.329 kb on + strand, within PGA1_262p00150at 20.337 kb on - strand, within PGA1_262p00150at 20.416 kb on + strandat 20.416 kb on + strandat 20.416 kb on + strandat 20.416 kb on + strandat 20.418 kb on + strandat 20.424 kb on - strandat 20.424 kb on - strandat 20.424 kb on - strandat 20.426 kb on - strandat 20.426 kb on - strandat 20.426 kb on - strandat 20.511 kb on + strandat 20.511 kb on + strandat 20.519 kb on - strandat 20.519 kb on - strandat 20.519 kb on - strandat 20.771 kb on + strandat 20.846 kb on - strand, within PGA1_262p00160at 20.950 kb on + strand, within PGA1_262p00160at 21.010 kb on + strand, within PGA1_262p00160at 21.010 kb on + strand, within PGA1_262p00160at 21.010 kb on + strand, within PGA1_262p00160at 21.010 kb on + strand, within PGA1_262p00160at 21.025 kb on + strand, within PGA1_262p00160at 21.025 kb on + strand, within PGA1_262p00160at 21.033 kb on - strandat 21.033 kb on - strandat 21.068 kb on - strandat 21.126 kb on + strand, within PGA1_262p00170at 21.218 kb on + strand, within PGA1_262p00170at 21.220 kb on + strand, within PGA1_262p00170at 21.228 kb on - strand, within PGA1_262p00170at 21.278 kb on - strand, within PGA1_262p00170at 21.314 kb on - strand, within PGA1_262p00170at 21.356 kb on - strand, within PGA1_262p00170at 21.356 kb on - strand, within PGA1_262p00170at 21.378 kb on - strand, within PGA1_262p00170at 21.413 kb on - strand, within PGA1_262p00170at 21.420 kb on - strand, within PGA1_262p00170at 21.531 kb on + strand, within PGA1_262p00170at 21.546 kb on + strand, within PGA1_262p00170

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.002 mg/ml
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17,034 + PGA1_262p00140 0.26 -0.9
17,090 - PGA1_262p00140 0.31 +0.8
17,261 - PGA1_262p00140 0.46 +0.6
17,270 + PGA1_262p00140 0.47 -0.8
17,288 - PGA1_262p00140 0.48 -0.5
17,412 + PGA1_262p00140 0.59 -0.6
17,414 - PGA1_262p00140 0.59 +0.7
17,511 - PGA1_262p00140 0.67 -0.4
17,539 - PGA1_262p00140 0.70 +0.5
17,539 - PGA1_262p00140 0.70 +1.1
17,665 - PGA1_262p00140 0.81 +0.5
17,716 + PGA1_262p00140 0.85 -0.2
17,716 + PGA1_262p00140 0.85 +1.0
17,724 - PGA1_262p00140 0.86 -1.5
17,777 + +0.0
18,087 + +1.3
18,120 + +0.2
18,310 - PGA1_262p00150 0.12 -0.3
18,371 - PGA1_262p00150 0.14 -0.3
18,471 + PGA1_262p00150 0.18 +0.8
18,521 - PGA1_262p00150 0.20 +0.8
18,567 + PGA1_262p00150 0.22 +0.0
18,676 - PGA1_262p00150 0.26 +0.7
18,768 + PGA1_262p00150 0.29 +1.8
18,844 - PGA1_262p00150 0.32 +0.5
18,883 - PGA1_262p00150 0.33 +0.5
18,888 + PGA1_262p00150 0.34 -0.7
18,898 + PGA1_262p00150 0.34 +0.1
18,936 - PGA1_262p00150 0.35 +1.3
18,952 - PGA1_262p00150 0.36 +0.8
18,983 + PGA1_262p00150 0.37 +0.7
19,019 - PGA1_262p00150 0.38 +2.0
19,088 + PGA1_262p00150 0.41 +0.9
19,144 + PGA1_262p00150 0.43 +0.7
19,152 + PGA1_262p00150 0.43 +1.1
19,214 - PGA1_262p00150 0.46 +2.6
19,219 - PGA1_262p00150 0.46 +0.5
19,322 + PGA1_262p00150 0.50 +0.1
19,537 + PGA1_262p00150 0.58 +0.5
19,547 + PGA1_262p00150 0.58 +0.5
19,550 - PGA1_262p00150 0.58 +0.1
19,555 - PGA1_262p00150 0.59 -0.8
19,635 - PGA1_262p00150 0.62 -0.0
19,674 + PGA1_262p00150 0.63 -1.5
19,769 - PGA1_262p00150 0.67 -1.5
19,772 - PGA1_262p00150 0.67 +0.0
19,774 - PGA1_262p00150 0.67 -2.3
19,796 + PGA1_262p00150 0.68 -1.2
19,802 + PGA1_262p00150 0.68 +1.9
19,817 - PGA1_262p00150 0.68 +0.5
19,870 - PGA1_262p00150 0.70 +1.8
20,035 + PGA1_262p00150 0.77 -0.7
20,140 + PGA1_262p00150 0.80 +1.4
20,329 + PGA1_262p00150 0.88 -0.0
20,329 + PGA1_262p00150 0.88 -0.9
20,337 - PGA1_262p00150 0.88 +1.0
20,416 + -1.0
20,416 + +1.1
20,416 + -0.7
20,416 + -1.5
20,418 + +0.2
20,424 - -0.6
20,424 - -0.0
20,424 - +0.8
20,426 - +0.4
20,426 - -2.3
20,426 - +0.9
20,511 + +0.3
20,511 + +0.1
20,519 - +1.3
20,519 - -0.2
20,519 - -0.2
20,771 + +0.1
20,846 - PGA1_262p00160 0.29 +1.1
20,950 + PGA1_262p00160 0.64 +2.1
21,010 + PGA1_262p00160 0.84 +1.1
21,010 + PGA1_262p00160 0.84 -1.0
21,010 + PGA1_262p00160 0.84 +2.4
21,010 + PGA1_262p00160 0.84 -0.5
21,025 + PGA1_262p00160 0.89 +0.2
21,025 + PGA1_262p00160 0.89 +0.7
21,033 - +1.5
21,033 - +0.2
21,068 - +0.0
21,126 + PGA1_262p00170 0.10 -1.0
21,218 + PGA1_262p00170 0.23 -0.6
21,220 + PGA1_262p00170 0.23 +1.3
21,228 - PGA1_262p00170 0.24 +0.1
21,278 - PGA1_262p00170 0.31 -0.5
21,314 - PGA1_262p00170 0.36 +0.4
21,356 - PGA1_262p00170 0.42 -0.1
21,356 - PGA1_262p00170 0.42 -0.2
21,378 - PGA1_262p00170 0.45 +1.5
21,413 - PGA1_262p00170 0.50 +0.4
21,420 - PGA1_262p00170 0.51 +0.2
21,531 + PGA1_262p00170 0.67 -1.2
21,546 + PGA1_262p00170 0.69 +0.3

Or see this region's nucleotide sequence