Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c35110

Experiment: m.b. Gentamicin 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c35100 and PGA1_c35110 are separated by 12 nucleotidesPGA1_c35110 and PGA1_c35120 are separated by 32 nucleotides PGA1_c35100: PGA1_c35100 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG, at 3,681,896 to 3,683,770 _c35100 PGA1_c35110: PGA1_c35110 - tRNA modification GTPase MnmE, at 3,683,783 to 3,685,075 _c35110 PGA1_c35120: PGA1_c35120 - transcription termination factor Rho, at 3,685,108 to 3,686,379 _c35120 Position (kb) 3683 3684 3685 3686Strain fitness (log2 ratio) -2 -1 0 1at 3683.786 kb on - strandat 3684.059 kb on - strand, within PGA1_c35110at 3684.059 kb on - strand, within PGA1_c35110

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.002 mg/ml
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3,683,786 - -0.0
3,684,059 - PGA1_c35110 0.21 -1.0
3,684,059 - PGA1_c35110 0.21 -2.2

Or see this region's nucleotide sequence