Experiment: m.b. Gentamicin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03450 and PGA1_c03460 are separated by 81 nucleotides PGA1_c03460 and PGA1_c03470 are separated by 52 nucleotides PGA1_c03470 and PGA1_c03480 are separated by 52 nucleotides
PGA1_c03450: PGA1_c03450 - argininosuccinate lyase ArgH, at 331,010 to 332,380
_c03450
PGA1_c03460: PGA1_c03460 - hypothetical protein, at 332,462 to 332,647
_c03460
PGA1_c03470: PGA1_c03470 - diaminopimelate decarboxylase LysA, at 332,700 to 333,965
_c03470
PGA1_c03480: PGA1_c03480 - hypothetical protein, at 334,018 to 336,831
_c03480
Position (kb) 332
333
334 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 331.918 kb on + strand, within PGA1_c03450 at 332.366 kb on - strand at 332.413 kb on - strand at 332.463 kb on - strand at 332.469 kb on + strand at 332.487 kb on - strand, within PGA1_c03460 at 332.492 kb on - strand, within PGA1_c03460 at 332.502 kb on + strand, within PGA1_c03460 at 332.591 kb on - strand, within PGA1_c03460 at 332.601 kb on + strand, within PGA1_c03460 at 332.601 kb on + strand, within PGA1_c03460 at 332.601 kb on + strand, within PGA1_c03460 at 332.601 kb on + strand, within PGA1_c03460 at 332.601 kb on + strand, within PGA1_c03460 at 332.609 kb on - strand, within PGA1_c03460 at 332.609 kb on - strand, within PGA1_c03460 at 332.609 kb on - strand, within PGA1_c03460 at 332.609 kb on - strand, within PGA1_c03460 at 332.609 kb on - strand, within PGA1_c03460 at 332.611 kb on + strand, within PGA1_c03460 at 332.611 kb on + strand, within PGA1_c03460 at 332.611 kb on + strand, within PGA1_c03460 at 332.619 kb on - strand, within PGA1_c03460 at 332.619 kb on - strand, within PGA1_c03460 at 332.628 kb on + strand, within PGA1_c03460 at 332.634 kb on + strand at 332.634 kb on + strand at 332.634 kb on + strand at 332.634 kb on + strand at 332.642 kb on + strand at 332.642 kb on + strand at 332.642 kb on + strand at 332.642 kb on + strand at 332.642 kb on - strand at 332.650 kb on - strand at 333.959 kb on + strand at 333.989 kb on + strand at 333.994 kb on + strand at 333.994 kb on + strand at 333.997 kb on - strand at 333.997 kb on - strand at 333.999 kb on + strand at 334.020 kb on + strand at 334.076 kb on + strand at 334.079 kb on + strand at 334.089 kb on + strand at 334.089 kb on + strand at 334.097 kb on - strand at 334.097 kb on - strand at 334.103 kb on - strand at 334.146 kb on - strand at 334.294 kb on + strand at 334.317 kb on + strand, within PGA1_c03480 at 334.332 kb on + strand, within PGA1_c03480 at 334.332 kb on + strand, within PGA1_c03480 at 334.332 kb on + strand, within PGA1_c03480 at 334.340 kb on - strand, within PGA1_c03480 at 334.340 kb on - strand, within PGA1_c03480 at 334.356 kb on + strand, within PGA1_c03480 at 334.518 kb on + strand, within PGA1_c03480 at 334.674 kb on + strand, within PGA1_c03480 at 334.794 kb on + strand, within PGA1_c03480 at 334.794 kb on + strand, within PGA1_c03480 at 334.802 kb on - strand, within PGA1_c03480 at 334.829 kb on + strand, within PGA1_c03480
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.002 mg/ml remove 331,918 + PGA1_c03450 0.66 -1.7 332,366 - +0.2 332,413 - +0.3 332,463 - +1.3 332,469 + +0.9 332,487 - PGA1_c03460 0.13 +0.4 332,492 - PGA1_c03460 0.16 +0.6 332,502 + PGA1_c03460 0.22 -0.5 332,591 - PGA1_c03460 0.69 -1.4 332,601 + PGA1_c03460 0.75 +1.6 332,601 + PGA1_c03460 0.75 -0.1 332,601 + PGA1_c03460 0.75 -1.3 332,601 + PGA1_c03460 0.75 -0.2 332,601 + PGA1_c03460 0.75 +0.2 332,609 - PGA1_c03460 0.79 +0.9 332,609 - PGA1_c03460 0.79 +0.6 332,609 - PGA1_c03460 0.79 -0.6 332,609 - PGA1_c03460 0.79 +0.6 332,609 - PGA1_c03460 0.79 +1.1 332,611 + PGA1_c03460 0.80 -0.8 332,611 + PGA1_c03460 0.80 +0.6 332,611 + PGA1_c03460 0.80 +0.4 332,619 - PGA1_c03460 0.84 +0.7 332,619 - PGA1_c03460 0.84 -0.6 332,628 + PGA1_c03460 0.89 -0.5 332,634 + -0.7 332,634 + +1.1 332,634 + +0.4 332,634 + +0.3 332,642 + +1.0 332,642 + +0.2 332,642 + +1.2 332,642 + +0.9 332,642 - -0.5 332,650 - +0.6 333,959 + +1.2 333,989 + -0.6 333,994 + +0.0 333,994 + +0.1 333,997 - -1.3 333,997 - -0.7 333,999 + +0.0 334,020 + -0.1 334,076 + -0.4 334,079 + +1.1 334,089 + -1.9 334,089 + -1.3 334,097 - +0.2 334,097 - -1.9 334,103 - -0.6 334,146 - -0.0 334,294 + +0.0 334,317 + PGA1_c03480 0.11 -0.8 334,332 + PGA1_c03480 0.11 +0.2 334,332 + PGA1_c03480 0.11 +2.5 334,332 + PGA1_c03480 0.11 -0.8 334,340 - PGA1_c03480 0.11 -1.6 334,340 - PGA1_c03480 0.11 -2.8 334,356 + PGA1_c03480 0.12 +0.5 334,518 + PGA1_c03480 0.18 -0.5 334,674 + PGA1_c03480 0.23 -0.3 334,794 + PGA1_c03480 0.28 -0.1 334,794 + PGA1_c03480 0.28 +0.5 334,802 - PGA1_c03480 0.28 -0.6 334,829 + PGA1_c03480 0.29 +1.5
Or see this region's nucleotide sequence