Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03450

Experiment: m.b. Gentamicin 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03430 and PGA1_c03440 are separated by 119 nucleotidesPGA1_c03440 and PGA1_c03450 are separated by 22 nucleotidesPGA1_c03450 and PGA1_c03460 are separated by 81 nucleotidesPGA1_c03460 and PGA1_c03470 are separated by 52 nucleotides PGA1_c03430: PGA1_c03430 - hypothetical protein, at 329,840 to 330,280 _c03430 PGA1_c03440: PGA1_c03440 - disulfide interchange protein tlpA-like protein, at 330,400 to 330,987 _c03440 PGA1_c03450: PGA1_c03450 - argininosuccinate lyase ArgH, at 331,010 to 332,380 _c03450 PGA1_c03460: PGA1_c03460 - hypothetical protein, at 332,462 to 332,647 _c03460 PGA1_c03470: PGA1_c03470 - diaminopimelate decarboxylase LysA, at 332,700 to 333,965 _c03470 Position (kb) 331 332 333Strain fitness (log2 ratio) -2 -1 0 1at 330.020 kb on - strand, within PGA1_c03430at 330.022 kb on + strand, within PGA1_c03430at 330.030 kb on - strand, within PGA1_c03430at 330.057 kb on + strand, within PGA1_c03430at 330.065 kb on - strand, within PGA1_c03430at 330.065 kb on - strand, within PGA1_c03430at 330.067 kb on + strand, within PGA1_c03430at 330.082 kb on - strand, within PGA1_c03430at 330.094 kb on + strand, within PGA1_c03430at 330.097 kb on - strand, within PGA1_c03430at 330.103 kb on + strand, within PGA1_c03430at 330.155 kb on + strand, within PGA1_c03430at 330.171 kb on - strand, within PGA1_c03430at 330.172 kb on - strand, within PGA1_c03430at 330.196 kb on + strand, within PGA1_c03430at 330.198 kb on - strand, within PGA1_c03430at 330.250 kb on + strandat 330.287 kb on + strandat 330.332 kb on - strandat 330.333 kb on - strandat 330.367 kb on + strandat 330.375 kb on - strandat 330.385 kb on + strandat 330.393 kb on - strandat 330.402 kb on + strandat 330.402 kb on + strandat 330.405 kb on - strandat 330.801 kb on + strand, within PGA1_c03440at 330.969 kb on - strandat 330.982 kb on + strandat 331.918 kb on + strand, within PGA1_c03450at 332.366 kb on - strandat 332.413 kb on - strandat 332.463 kb on - strandat 332.469 kb on + strandat 332.487 kb on - strand, within PGA1_c03460at 332.492 kb on - strand, within PGA1_c03460at 332.502 kb on + strand, within PGA1_c03460at 332.591 kb on - strand, within PGA1_c03460at 332.601 kb on + strand, within PGA1_c03460at 332.601 kb on + strand, within PGA1_c03460at 332.601 kb on + strand, within PGA1_c03460at 332.601 kb on + strand, within PGA1_c03460at 332.601 kb on + strand, within PGA1_c03460at 332.609 kb on - strand, within PGA1_c03460at 332.609 kb on - strand, within PGA1_c03460at 332.609 kb on - strand, within PGA1_c03460at 332.609 kb on - strand, within PGA1_c03460at 332.609 kb on - strand, within PGA1_c03460at 332.611 kb on + strand, within PGA1_c03460at 332.611 kb on + strand, within PGA1_c03460at 332.611 kb on + strand, within PGA1_c03460at 332.619 kb on - strand, within PGA1_c03460at 332.619 kb on - strand, within PGA1_c03460at 332.628 kb on + strand, within PGA1_c03460at 332.634 kb on + strandat 332.634 kb on + strandat 332.634 kb on + strandat 332.634 kb on + strandat 332.642 kb on + strandat 332.642 kb on + strandat 332.642 kb on + strandat 332.642 kb on + strandat 332.642 kb on - strandat 332.650 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.002 mg/ml
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330,020 - PGA1_c03430 0.41 -2.2
330,022 + PGA1_c03430 0.41 -0.4
330,030 - PGA1_c03430 0.43 +0.0
330,057 + PGA1_c03430 0.49 -0.5
330,065 - PGA1_c03430 0.51 +0.7
330,065 - PGA1_c03430 0.51 +0.2
330,067 + PGA1_c03430 0.51 -2.4
330,082 - PGA1_c03430 0.55 -0.7
330,094 + PGA1_c03430 0.58 -0.2
330,097 - PGA1_c03430 0.58 +0.3
330,103 + PGA1_c03430 0.60 +0.9
330,155 + PGA1_c03430 0.71 +0.4
330,171 - PGA1_c03430 0.75 -0.7
330,172 - PGA1_c03430 0.75 -0.3
330,196 + PGA1_c03430 0.81 -0.2
330,198 - PGA1_c03430 0.81 -0.8
330,250 + -1.7
330,287 + +1.1
330,332 - -0.9
330,333 - +0.7
330,367 + -1.9
330,375 - +0.4
330,385 + -1.3
330,393 - +1.2
330,402 + +0.1
330,402 + +1.6
330,405 - -0.7
330,801 + PGA1_c03440 0.68 +1.5
330,969 - -1.4
330,982 + -0.7
331,918 + PGA1_c03450 0.66 -1.7
332,366 - +0.2
332,413 - +0.3
332,463 - +1.3
332,469 + +0.9
332,487 - PGA1_c03460 0.13 +0.4
332,492 - PGA1_c03460 0.16 +0.6
332,502 + PGA1_c03460 0.22 -0.5
332,591 - PGA1_c03460 0.69 -1.4
332,601 + PGA1_c03460 0.75 +1.6
332,601 + PGA1_c03460 0.75 -0.1
332,601 + PGA1_c03460 0.75 -1.3
332,601 + PGA1_c03460 0.75 -0.2
332,601 + PGA1_c03460 0.75 +0.2
332,609 - PGA1_c03460 0.79 +0.9
332,609 - PGA1_c03460 0.79 +0.6
332,609 - PGA1_c03460 0.79 -0.6
332,609 - PGA1_c03460 0.79 +0.6
332,609 - PGA1_c03460 0.79 +1.1
332,611 + PGA1_c03460 0.80 -0.8
332,611 + PGA1_c03460 0.80 +0.6
332,611 + PGA1_c03460 0.80 +0.4
332,619 - PGA1_c03460 0.84 +0.7
332,619 - PGA1_c03460 0.84 -0.6
332,628 + PGA1_c03460 0.89 -0.5
332,634 + -0.7
332,634 + +1.1
332,634 + +0.4
332,634 + +0.3
332,642 + +1.0
332,642 + +0.2
332,642 + +1.2
332,642 + +0.9
332,642 - -0.5
332,650 - +0.6

Or see this region's nucleotide sequence