Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c29520

Experiment: m.b. Gentamicin 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Gentamicin 0.002 mg/ml
3,085,340	-				+0.7
3,085,343	+				-2.3
3,085,361	+				+0.3
3,085,369	-				-0.8
3,085,369	-				-1.3
3,085,369	-				-0.2
3,085,369	-				-0.4
3,085,369	-				-1.6
3,085,395	+				-1.2
3,085,398	-				-0.1
3,085,486	+		PGA1_c29510	0.14	-1.2
3,085,503	-		PGA1_c29510	0.16	-0.5
3,085,526	+		PGA1_c29510	0.19	-0.1
3,085,526	+		PGA1_c29510	0.19	+0.5
3,085,534	-		PGA1_c29510	0.20	-1.3
3,085,536	+		PGA1_c29510	0.20	-1.8
3,085,536	+		PGA1_c29510	0.20	-0.1
3,085,543	+		PGA1_c29510	0.21	-0.4
3,085,591	-		PGA1_c29510	0.27	-0.7
3,085,632	-		PGA1_c29510	0.32	-0.7
3,085,636	+		PGA1_c29510	0.33	-3.0
3,085,644	-		PGA1_c29510	0.34	-1.1
3,085,701	+		PGA1_c29510	0.41	+1.0
3,085,709	-		PGA1_c29510	0.42	-0.3
3,085,720	+		PGA1_c29510	0.43	-1.0
3,085,728	-		PGA1_c29510	0.44	-0.2
3,085,790	+		PGA1_c29510	0.51	-1.8
3,085,790	+		PGA1_c29510	0.51	-1.1
3,085,790	+		PGA1_c29510	0.51	-0.1
3,085,790	+		PGA1_c29510	0.51	-0.3
3,085,790	+		PGA1_c29510	0.51	-2.0
3,085,798	-		PGA1_c29510	0.52	-0.1
3,085,798	-		PGA1_c29510	0.52	-1.3
3,085,798	-		PGA1_c29510	0.52	-3.0
3,085,798	-		PGA1_c29510	0.52	-1.3
3,085,798	-		PGA1_c29510	0.52	+0.6
3,085,798	-		PGA1_c29510	0.52	-2.0
3,085,798	-		PGA1_c29510	0.52	-0.1
3,085,826	-		PGA1_c29510	0.56	-0.5
3,085,830	-		PGA1_c29510	0.56	+0.4
3,085,833	+		PGA1_c29510	0.57	-1.6
3,085,841	-		PGA1_c29510	0.58	-0.6
3,085,841	-		PGA1_c29510	0.58	+0.2
3,085,841	-		PGA1_c29510	0.58	+0.0
3,085,841	-		PGA1_c29510	0.58	-1.4
3,085,841	-		PGA1_c29510	0.58	-1.5
3,085,841	-		PGA1_c29510	0.58	-0.1
3,085,841	-		PGA1_c29510	0.58	-2.0
3,085,841	-		PGA1_c29510	0.58	-0.4
3,085,854	-		PGA1_c29510	0.59	-0.1
3,085,868	+		PGA1_c29510	0.61	-0.1
3,085,904	+		PGA1_c29510	0.65	+0.1
3,085,904	+		PGA1_c29510	0.65	-0.6
3,085,917	-		PGA1_c29510	0.67	+0.2
3,085,933	-		PGA1_c29510	0.69	-0.8
3,085,939	+		PGA1_c29510	0.70	+0.5
3,085,960	+		PGA1_c29510	0.72	-3.2
3,085,960	+		PGA1_c29510	0.72	-2.7
3,085,997	-		PGA1_c29510	0.77	+0.2
3,086,022	+		PGA1_c29510	0.80	-0.5
3,086,027	+		PGA1_c29510	0.80	-0.1
3,086,035	-		PGA1_c29510	0.81	+1.2
3,086,074	-		PGA1_c29510	0.86	-0.4
3,086,123	+				-0.7
3,086,123	+				-0.3
3,086,131	-				+0.3
3,086,133	+				+0.2
3,086,133	+				-1.0
3,086,160	+				-0.3
3,086,168	-				-0.9
3,086,171	-				-0.9
3,086,188	-				-1.1
3,086,196	+				-1.5
3,086,196	+				-1.7
3,086,199	-				-0.7
3,086,204	-				+0.6
3,086,204	-				+0.4
3,086,204	-				+0.3
3,086,228	+				-0.1
3,086,228	+				-1.1
3,086,228	+				-0.0
3,086,229	-				+1.0
3,086,233	+				-0.4
3,086,233	+				-0.4
3,086,233	+				+0.4
3,086,233	+				-0.1
3,086,233	+				-0.4
3,086,233	+				+0.5
3,086,233	+				-0.7
3,086,233	+				+0.5
3,086,233	+				+1.0
3,086,233	+				+0.6
3,086,233	+				-1.7
3,086,233	+				-2.4
3,086,236	-				-0.9
3,086,236	-				+0.6
3,086,239	-				+0.4
3,086,239	-				-0.3
3,086,241	-				+0.1
3,086,241	-				+0.3
3,086,241	-				-1.1
3,086,241	-				+0.8
3,086,315	-				-0.4
3,086,317	-				-0.1
3,086,346	+				-0.8
3,086,356	+				+0.4
3,086,356	-				-2.2
3,086,366	-				-0.9
3,086,367	+				-0.1
3,086,367	+				-0.7
3,086,375	-				-0.1
3,086,393	+				-1.0
3,086,408	+				-0.8
3,086,416	+				-0.4
3,086,416	+				-2.5
3,086,416	+				-2.1
3,086,424	-				+0.0
3,086,467	+				-1.7
3,086,477	+				-0.3
3,086,477	+				+0.3
3,086,477	+				+0.5
3,086,477	+				-0.6
3,086,485	-				-1.3
3,086,485	-				-0.1
3,086,485	-				+0.6
3,086,488	-		PGA1_c29520	0.10	-0.5
3,086,488	-		PGA1_c29520	0.10	-0.4
3,086,502	+		PGA1_c29520	0.11	-0.7
3,086,508	-		PGA1_c29520	0.11	+0.7
3,086,510	-		PGA1_c29520	0.11	-0.8
3,086,556	-		PGA1_c29520	0.14	-0.4
3,086,556	-		PGA1_c29520	0.14	-1.4
3,086,559	+		PGA1_c29520	0.15	-0.2
3,086,561	-		PGA1_c29520	0.15	-1.7
3,086,567	-		PGA1_c29520	0.15	+1.0
3,086,582	+		PGA1_c29520	0.16	-0.0
3,086,585	-		PGA1_c29520	0.16	-0.8
3,086,617	+		PGA1_c29520	0.18	+0.2
3,086,617	+		PGA1_c29520	0.18	-1.1
3,086,617	+		PGA1_c29520	0.18	-2.4
3,086,617	+		PGA1_c29520	0.18	-0.7
3,086,625	-		PGA1_c29520	0.19	+1.1
3,086,625	-		PGA1_c29520	0.19	-0.6
3,086,646	+		PGA1_c29520	0.20	+0.1
3,086,651	+		PGA1_c29520	0.20	-0.1
3,086,651	+		PGA1_c29520	0.20	-1.6
3,086,654	-		PGA1_c29520	0.21	-1.1
3,086,659	-		PGA1_c29520	0.21	-1.3
3,086,666	-		PGA1_c29520	0.21	-3.5
3,086,725	+		PGA1_c29520	0.25	-0.1
3,086,725	-		PGA1_c29520	0.25	+1.4
3,086,733	-		PGA1_c29520	0.26	+1.4
3,086,733	-		PGA1_c29520	0.26	-0.2
3,086,808	+		PGA1_c29520	0.30	-2.1
3,086,831	+		PGA1_c29520	0.32	-0.6
3,086,831	+		PGA1_c29520	0.32	-1.0
3,086,831	+		PGA1_c29520	0.32	-0.4
3,086,831	+		PGA1_c29520	0.32	-0.8
3,086,831	+		PGA1_c29520	0.32	-1.3
3,086,831	+		PGA1_c29520	0.32	+0.9
3,086,839	-		PGA1_c29520	0.32	-0.6
3,086,839	-		PGA1_c29520	0.32	-1.1
3,086,839	-		PGA1_c29520	0.32	-0.5
3,086,839	-		PGA1_c29520	0.32	+0.1
3,086,848	+		PGA1_c29520	0.33	-0.3
3,086,883	+		PGA1_c29520	0.35	-0.5
3,086,897	-		PGA1_c29520	0.36	-3.1
3,086,918	-		PGA1_c29520	0.37	+0.2
3,086,923	+		PGA1_c29520	0.38	-1.0
3,086,923	+		PGA1_c29520	0.38	-0.8
3,086,974	-		PGA1_c29520	0.41	-1.4
3,087,054	-		PGA1_c29520	0.46	-1.0
3,087,065	+		PGA1_c29520	0.47	+0.3
3,087,085	+		PGA1_c29520	0.48	-1.1
3,087,093	-		PGA1_c29520	0.48	+0.3
3,087,116	+		PGA1_c29520	0.50	-1.2
3,087,116	+		PGA1_c29520	0.50	-0.8
3,087,116	+		PGA1_c29520	0.50	-0.5
3,087,142	+		PGA1_c29520	0.51	-2.0
3,087,150	-		PGA1_c29520	0.52	+0.0
3,087,155	-		PGA1_c29520	0.52	-1.4
3,087,189	+		PGA1_c29520	0.54	-0.8
3,087,219	+		PGA1_c29520	0.56	-0.9
3,087,237	-		PGA1_c29520	0.57	-1.3
3,087,367	+		PGA1_c29520	0.66	-1.8
3,087,402	+		PGA1_c29520	0.68	+0.1
3,087,412	+		PGA1_c29520	0.69	+0.0
3,087,415	-		PGA1_c29520	0.69	+0.6
3,087,415	-		PGA1_c29520	0.69	-1.1
3,087,420	-		PGA1_c29520	0.69	+3.4
3,087,442	-		PGA1_c29520	0.70	-1.5
3,087,473	+		PGA1_c29520	0.72	-0.7
3,087,473	-		PGA1_c29520	0.72	-0.5
3,087,552	+		PGA1_c29520	0.77	-1.1
3,087,552	+		PGA1_c29520	0.77	-1.7
3,087,560	-		PGA1_c29520	0.78	-1.1
3,087,560	-		PGA1_c29520	0.78	-2.5
3,087,560	-		PGA1_c29520	0.78	+0.7
3,087,696	-		PGA1_c29520	0.87	-0.4
3,087,788	+				+1.3
3,087,788	+				-2.8
3,087,866	+				-0.4
3,087,874	-				-0.3
3,087,897	+				+0.2
3,087,905	-				-1.0
3,087,905	-				+0.9
3,087,910	-				-1.1
3,087,910	-				-0.2
3,087,910	-				+1.3
3,087,933	+				+0.4
3,087,933	+				-0.4
3,087,936	-				+0.6
3,087,941	-				+1.0
3,087,941	-				-0.2
3,087,941	-				-2.8
3,087,941	-				+1.9
3,088,081	+		PGA1_c29530	0.18	-2.3
3,088,101	+		PGA1_c29530	0.21	-0.7
3,088,116	+		PGA1_c29530	0.24	-1.1
3,088,116	+		PGA1_c29530	0.24	+0.4
3,088,116	+		PGA1_c29530	0.24	-2.2
3,088,124	-		PGA1_c29530	0.25	+0.0
3,088,124	-		PGA1_c29530	0.25	-0.5
3,088,167	+		PGA1_c29530	0.31	-0.4
3,088,167	+		PGA1_c29530	0.31	+0.1
3,088,175	-		PGA1_c29530	0.33	-0.8
3,088,175	-		PGA1_c29530	0.33	-1.0
3,088,261	-		PGA1_c29530	0.46	+1.5
3,088,266	-		PGA1_c29530	0.47	+0.0
3,088,310	+		PGA1_c29530	0.54	+0.1
3,088,315	+		PGA1_c29530	0.54	+0.2
3,088,315	+		PGA1_c29530	0.54	+0.6
3,088,350	+		PGA1_c29530	0.60	+1.9
3,088,352	-		PGA1_c29530	0.60	-0.9
3,088,439	-		PGA1_c29530	0.73	-0.1
3,088,450	+		PGA1_c29530	0.75	-0.9
3,088,452	+		PGA1_c29530	0.75	-1.1
3,088,458	-		PGA1_c29530	0.76	-0.1
3,088,468	-		PGA1_c29530	0.78	-1.8
3,088,502	+		PGA1_c29530	0.83	-0.3
3,088,502	+		PGA1_c29530	0.83	+0.8
3,088,507	+		PGA1_c29530	0.84	-1.5
3,088,510	-		PGA1_c29530	0.84	-1.4
3,088,510	-		PGA1_c29530	0.84	+0.4
3,088,510	-		PGA1_c29530	0.84	-0.4
3,088,510	-		PGA1_c29530	0.84	-1.0
3,088,515	-		PGA1_c29530	0.85	+0.4
3,088,515	-		PGA1_c29530	0.85	-1.6
3,088,525	+		PGA1_c29530	0.87	+0.7
3,088,543	+		PGA1_c29530	0.90	+0.0
3,088,569	-				+0.9
3,088,613	-				+0.3
3,088,643	-				+0.2
3,088,643	-				-0.8
3,088,650	-		PGA1_c29540	0.12	-2.1
3,088,671	+		PGA1_c29540	0.19	-0.5
3,088,679	-		PGA1_c29540	0.22	-1.1
3,088,699	+		PGA1_c29540	0.30	-2.6
3,088,709	+		PGA1_c29540	0.34	+0.1
3,088,713	+		PGA1_c29540	0.35	+1.0
3,088,762	-		PGA1_c29540	0.54	-1.1