Strain Fitness in Marinobacter adhaerens HP15 around HP15_244

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_243 and HP15_244 are separated by 27 nucleotidesHP15_244 and HP15_245 are separated by 108 nucleotides HP15_243: HP15_243 - argininosuccinate lyase, at 228,441 to 229,850 _243 HP15_244: HP15_244 - PAS sensor diguanylate cyclase and phosphodiesterase, at 229,878 to 232,322 _244 HP15_245: HP15_245 - adenylate cyclase, at 232,431 to 235,289 _245 Position (kb) 229 230 231 232 233Strain fitness (log2 ratio) -2 -1 0 1 2at 229.937 kb on + strandat 229.942 kb on + strandat 229.954 kb on + strandat 229.992 kb on - strandat 229.992 kb on - strandat 230.008 kb on - strandat 230.069 kb on - strandat 230.193 kb on + strand, within HP15_244at 230.193 kb on + strand, within HP15_244at 230.193 kb on + strand, within HP15_244at 230.193 kb on + strand, within HP15_244at 230.201 kb on - strand, within HP15_244at 230.201 kb on - strand, within HP15_244at 230.213 kb on - strand, within HP15_244at 230.225 kb on + strand, within HP15_244at 230.227 kb on + strand, within HP15_244at 230.237 kb on + strand, within HP15_244at 230.298 kb on + strand, within HP15_244at 230.363 kb on - strand, within HP15_244at 230.409 kb on + strand, within HP15_244at 230.432 kb on + strand, within HP15_244at 230.433 kb on + strand, within HP15_244at 230.440 kb on - strand, within HP15_244at 230.477 kb on + strand, within HP15_244at 230.519 kb on - strand, within HP15_244at 230.566 kb on - strand, within HP15_244at 230.663 kb on + strand, within HP15_244at 230.700 kb on + strand, within HP15_244at 230.741 kb on - strand, within HP15_244at 230.748 kb on + strand, within HP15_244at 230.751 kb on - strand, within HP15_244at 230.753 kb on + strand, within HP15_244at 230.761 kb on - strand, within HP15_244at 230.775 kb on - strand, within HP15_244at 230.797 kb on + strand, within HP15_244at 230.810 kb on - strand, within HP15_244at 230.887 kb on - strand, within HP15_244at 231.001 kb on - strand, within HP15_244at 231.085 kb on - strand, within HP15_244at 231.114 kb on + strand, within HP15_244at 231.130 kb on - strand, within HP15_244at 231.193 kb on + strand, within HP15_244at 231.275 kb on + strand, within HP15_244at 231.321 kb on - strand, within HP15_244at 231.335 kb on - strand, within HP15_244at 231.461 kb on + strand, within HP15_244at 231.469 kb on - strand, within HP15_244at 231.495 kb on - strand, within HP15_244at 231.542 kb on + strand, within HP15_244at 231.553 kb on + strand, within HP15_244at 231.590 kb on + strand, within HP15_244at 231.789 kb on - strand, within HP15_244at 231.868 kb on + strand, within HP15_244at 231.882 kb on - strand, within HP15_244at 231.930 kb on + strand, within HP15_244at 231.930 kb on + strand, within HP15_244at 231.938 kb on - strand, within HP15_244at 231.980 kb on + strand, within HP15_244at 232.053 kb on - strand, within HP15_244at 232.053 kb on - strand, within HP15_244at 232.062 kb on - strand, within HP15_244at 232.099 kb on - strandat 232.104 kb on - strandat 232.136 kb on - strandat 232.294 kb on - strandat 232.327 kb on + strandat 232.334 kb on - strandat 232.365 kb on + strandat 232.384 kb on + strandat 232.462 kb on + strandat 232.470 kb on - strandat 232.562 kb on - strandat 232.562 kb on - strandat 232.628 kb on - strandat 232.659 kb on - strandat 232.755 kb on - strand, within HP15_245at 232.797 kb on - strand, within HP15_245at 232.875 kb on - strand, within HP15_245at 232.895 kb on - strand, within HP15_245at 232.972 kb on + strand, within HP15_245at 232.972 kb on + strand, within HP15_245at 232.972 kb on + strand, within HP15_245at 232.980 kb on - strand, within HP15_245at 232.986 kb on + strand, within HP15_245at 233.002 kb on - strand, within HP15_245at 233.037 kb on - strand, within HP15_245at 233.083 kb on + strand, within HP15_245at 233.086 kb on - strand, within HP15_245at 233.112 kb on - strand, within HP15_245at 233.114 kb on - strand, within HP15_245at 233.307 kb on + strand, within HP15_245at 233.310 kb on + strand, within HP15_245

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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229,937 + -1.1
229,942 + -0.3
229,954 + -0.1
229,992 - +0.0
229,992 - -0.6
230,008 - -0.4
230,069 - -1.0
230,193 + HP15_244 0.13 +0.0
230,193 + HP15_244 0.13 +0.9
230,193 + HP15_244 0.13 -0.3
230,193 + HP15_244 0.13 -1.6
230,201 - HP15_244 0.13 -0.8
230,201 - HP15_244 0.13 +0.2
230,213 - HP15_244 0.14 -0.6
230,225 + HP15_244 0.14 -0.2
230,227 + HP15_244 0.14 -1.8
230,237 + HP15_244 0.15 -0.1
230,298 + HP15_244 0.17 -1.2
230,363 - HP15_244 0.20 -0.3
230,409 + HP15_244 0.22 +0.4
230,432 + HP15_244 0.23 -0.1
230,433 + HP15_244 0.23 -0.1
230,440 - HP15_244 0.23 -0.4
230,477 + HP15_244 0.24 -0.1
230,519 - HP15_244 0.26 -0.5
230,566 - HP15_244 0.28 +0.1
230,663 + HP15_244 0.32 -1.1
230,700 + HP15_244 0.34 -1.4
230,741 - HP15_244 0.35 -0.4
230,748 + HP15_244 0.36 -0.3
230,751 - HP15_244 0.36 -0.5
230,753 + HP15_244 0.36 +0.1
230,761 - HP15_244 0.36 -0.2
230,775 - HP15_244 0.37 +0.4
230,797 + HP15_244 0.38 +0.6
230,810 - HP15_244 0.38 -0.1
230,887 - HP15_244 0.41 +2.2
231,001 - HP15_244 0.46 +0.2
231,085 - HP15_244 0.49 -0.6
231,114 + HP15_244 0.51 -0.8
231,130 - HP15_244 0.51 -1.6
231,193 + HP15_244 0.54 +0.6
231,275 + HP15_244 0.57 -0.3
231,321 - HP15_244 0.59 -0.9
231,335 - HP15_244 0.60 +0.4
231,461 + HP15_244 0.65 +0.2
231,469 - HP15_244 0.65 -0.1
231,495 - HP15_244 0.66 -0.0
231,542 + HP15_244 0.68 -0.7
231,553 + HP15_244 0.69 -0.5
231,590 + HP15_244 0.70 -2.0
231,789 - HP15_244 0.78 +0.6
231,868 + HP15_244 0.81 -0.1
231,882 - HP15_244 0.82 -0.2
231,930 + HP15_244 0.84 -0.9
231,930 + HP15_244 0.84 -1.1
231,938 - HP15_244 0.84 +0.8
231,980 + HP15_244 0.86 +0.6
232,053 - HP15_244 0.89 +0.6
232,053 - HP15_244 0.89 -0.8
232,062 - HP15_244 0.89 -0.5
232,099 - -1.5
232,104 - -1.7
232,136 - -0.7
232,294 - +0.2
232,327 + -0.4
232,334 - -1.7
232,365 + +0.6
232,384 + -0.3
232,462 + +0.2
232,470 - +0.1
232,562 - +0.0
232,562 - -1.4
232,628 - +0.1
232,659 - +0.2
232,755 - HP15_245 0.11 -0.2
232,797 - HP15_245 0.13 -0.8
232,875 - HP15_245 0.16 +0.0
232,895 - HP15_245 0.16 +0.5
232,972 + HP15_245 0.19 -1.4
232,972 + HP15_245 0.19 +0.5
232,972 + HP15_245 0.19 +0.7
232,980 - HP15_245 0.19 -0.1
232,986 + HP15_245 0.19 -0.2
233,002 - HP15_245 0.20 -0.1
233,037 - HP15_245 0.21 +0.1
233,083 + HP15_245 0.23 -1.4
233,086 - HP15_245 0.23 -2.2
233,112 - HP15_245 0.24 -1.7
233,114 - HP15_245 0.24 -0.4
233,307 + HP15_245 0.31 -0.4
233,310 + HP15_245 0.31 -0.9

Or see this region's nucleotide sequence