Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_240 and HP15_241 are separated by 92 nucleotides HP15_241 and HP15_242 are separated by 29 nucleotides HP15_242 and HP15_243 are separated by 119 nucleotides
HP15_240: HP15_240 - porphobilinogen deaminase, at 225,468 to 226,409
_240
HP15_241: HP15_241 - alginate biosynthesis regulatory protein AlgR-like protein, at 226,502 to 227,251
_241
HP15_242: HP15_242 - histidine kinase internal region, at 227,281 to 228,321
_242
HP15_243: HP15_243 - argininosuccinate lyase, at 228,441 to 229,850
_243
Position (kb) 227
228
229 Strain fitness (log2 ratio) -2
-1
0
1 at 226.527 kb on - strand at 226.605 kb on - strand, within HP15_241 at 226.630 kb on + strand, within HP15_241 at 226.655 kb on + strand, within HP15_241 at 226.665 kb on + strand, within HP15_241 at 226.673 kb on - strand, within HP15_241 at 226.673 kb on - strand, within HP15_241 at 226.673 kb on - strand, within HP15_241 at 226.775 kb on + strand, within HP15_241 at 226.814 kb on - strand, within HP15_241 at 226.849 kb on - strand, within HP15_241 at 226.849 kb on - strand, within HP15_241 at 226.890 kb on + strand, within HP15_241 at 226.902 kb on + strand, within HP15_241 at 226.909 kb on - strand, within HP15_241 at 226.935 kb on + strand, within HP15_241 at 226.945 kb on + strand, within HP15_241 at 227.247 kb on + strand at 227.271 kb on + strand at 227.271 kb on + strand at 227.362 kb on + strand at 227.421 kb on + strand, within HP15_242 at 227.424 kb on - strand, within HP15_242 at 227.484 kb on + strand, within HP15_242 at 227.511 kb on - strand, within HP15_242 at 227.659 kb on + strand, within HP15_242 at 227.678 kb on + strand, within HP15_242 at 227.702 kb on + strand, within HP15_242 at 227.757 kb on - strand, within HP15_242 at 227.857 kb on + strand, within HP15_242 at 227.857 kb on + strand, within HP15_242 at 227.930 kb on - strand, within HP15_242 at 228.018 kb on - strand, within HP15_242 at 228.044 kb on - strand, within HP15_242 at 228.044 kb on - strand, within HP15_242 at 228.060 kb on + strand, within HP15_242 at 228.067 kb on + strand, within HP15_242 at 228.130 kb on + strand, within HP15_242 at 228.143 kb on - strand, within HP15_242 at 228.145 kb on + strand, within HP15_242 at 228.145 kb on + strand, within HP15_242 at 228.145 kb on + strand, within HP15_242 at 228.150 kb on + strand, within HP15_242 at 228.152 kb on + strand, within HP15_242 at 228.152 kb on + strand, within HP15_242 at 228.153 kb on - strand, within HP15_242 at 228.153 kb on - strand, within HP15_242 at 228.153 kb on - strand, within HP15_242 at 228.153 kb on - strand, within HP15_242 at 228.153 kb on - strand, within HP15_242 at 228.246 kb on + strand at 228.259 kb on - strand at 228.281 kb on + strand at 228.299 kb on - strand at 228.344 kb on + strand at 228.348 kb on + strand at 228.358 kb on + strand at 228.366 kb on - strand at 228.397 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 226,527 - +0.9 226,605 - HP15_241 0.14 -0.1 226,630 + HP15_241 0.17 -0.8 226,655 + HP15_241 0.20 -0.2 226,665 + HP15_241 0.22 -0.8 226,673 - HP15_241 0.23 +1.2 226,673 - HP15_241 0.23 -0.7 226,673 - HP15_241 0.23 -0.5 226,775 + HP15_241 0.36 -1.3 226,814 - HP15_241 0.42 +0.3 226,849 - HP15_241 0.46 -0.1 226,849 - HP15_241 0.46 -1.1 226,890 + HP15_241 0.52 -0.4 226,902 + HP15_241 0.53 -1.0 226,909 - HP15_241 0.54 -0.4 226,935 + HP15_241 0.58 -1.6 226,945 + HP15_241 0.59 +0.7 227,247 + -0.2 227,271 + +0.1 227,271 + -0.4 227,362 + -0.3 227,421 + HP15_242 0.13 -0.3 227,424 - HP15_242 0.14 -0.5 227,484 + HP15_242 0.20 +0.9 227,511 - HP15_242 0.22 +0.8 227,659 + HP15_242 0.36 +1.0 227,678 + HP15_242 0.38 -0.1 227,702 + HP15_242 0.40 -1.0 227,757 - HP15_242 0.46 -0.4 227,857 + HP15_242 0.55 +0.8 227,857 + HP15_242 0.55 -0.6 227,930 - HP15_242 0.62 +0.1 228,018 - HP15_242 0.71 -1.4 228,044 - HP15_242 0.73 -0.5 228,044 - HP15_242 0.73 -1.5 228,060 + HP15_242 0.75 -1.1 228,067 + HP15_242 0.76 -0.4 228,130 + HP15_242 0.82 +0.6 228,143 - HP15_242 0.83 +0.3 228,145 + HP15_242 0.83 -0.8 228,145 + HP15_242 0.83 -0.7 228,145 + HP15_242 0.83 -0.1 228,150 + HP15_242 0.83 -0.1 228,152 + HP15_242 0.84 -0.6 228,152 + HP15_242 0.84 -0.4 228,153 - HP15_242 0.84 -0.3 228,153 - HP15_242 0.84 -2.1 228,153 - HP15_242 0.84 +0.4 228,153 - HP15_242 0.84 -0.4 228,153 - HP15_242 0.84 -0.7 228,246 + -1.1 228,259 - -0.6 228,281 + -1.4 228,299 - +0.0 228,344 + +0.5 228,348 + +1.5 228,358 + -0.3 228,366 - +0.6 228,397 + -1.0
Or see this region's nucleotide sequence