Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02360

Experiment: m.b. Gentamicin 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02350 and PGA1_c02360 are separated by 383 nucleotidesPGA1_c02360 and PGA1_c02370 are separated by 110 nucleotides PGA1_c02350: PGA1_c02350 - inner membrane protein YfdC, at 211,379 to 212,218 _c02350 PGA1_c02360: PGA1_c02360 - pyridine nucleotide-disulphide oxidoreductase, at 212,602 to 213,930 _c02360 PGA1_c02370: PGA1_c02370 - putative ribonuclease BN, at 214,041 to 215,150 _c02370 Position (kb) 212 213 214Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 211.633 kb on - strand, within PGA1_c02350at 211.644 kb on + strand, within PGA1_c02350at 211.687 kb on + strand, within PGA1_c02350at 211.688 kb on - strand, within PGA1_c02350at 211.722 kb on + strand, within PGA1_c02350at 211.722 kb on + strand, within PGA1_c02350at 211.722 kb on + strand, within PGA1_c02350at 211.732 kb on - strand, within PGA1_c02350at 211.748 kb on + strand, within PGA1_c02350at 211.768 kb on + strand, within PGA1_c02350at 211.768 kb on + strand, within PGA1_c02350at 211.768 kb on + strand, within PGA1_c02350at 211.768 kb on + strand, within PGA1_c02350at 211.768 kb on + strand, within PGA1_c02350at 211.768 kb on + strand, within PGA1_c02350at 211.768 kb on + strand, within PGA1_c02350at 211.768 kb on + strand, within PGA1_c02350at 211.768 kb on + strand, within PGA1_c02350at 211.768 kb on + strand, within PGA1_c02350at 211.768 kb on + strand, within PGA1_c02350at 211.768 kb on + strand, within PGA1_c02350at 211.768 kb on + strand, within PGA1_c02350at 211.768 kb on + strand, within PGA1_c02350at 211.776 kb on - strand, within PGA1_c02350at 211.776 kb on - strand, within PGA1_c02350at 211.776 kb on - strand, within PGA1_c02350at 211.776 kb on - strand, within PGA1_c02350at 211.776 kb on - strand, within PGA1_c02350at 211.776 kb on - strand, within PGA1_c02350at 211.776 kb on - strand, within PGA1_c02350at 211.776 kb on - strand, within PGA1_c02350at 211.776 kb on - strand, within PGA1_c02350at 211.777 kb on + strand, within PGA1_c02350at 211.838 kb on + strand, within PGA1_c02350at 211.912 kb on - strand, within PGA1_c02350at 211.913 kb on + strand, within PGA1_c02350at 211.918 kb on + strand, within PGA1_c02350at 211.918 kb on + strand, within PGA1_c02350at 211.918 kb on + strand, within PGA1_c02350at 211.918 kb on + strand, within PGA1_c02350at 211.918 kb on + strand, within PGA1_c02350at 211.918 kb on + strand, within PGA1_c02350at 211.918 kb on + strand, within PGA1_c02350at 211.918 kb on + strand, within PGA1_c02350at 211.918 kb on + strand, within PGA1_c02350at 211.918 kb on + strand, within PGA1_c02350at 211.921 kb on - strand, within PGA1_c02350at 211.921 kb on - strand, within PGA1_c02350at 211.921 kb on - strand, within PGA1_c02350at 211.921 kb on - strand, within PGA1_c02350at 211.921 kb on - strand, within PGA1_c02350at 211.926 kb on - strand, within PGA1_c02350at 211.926 kb on - strand, within PGA1_c02350at 211.926 kb on - strand, within PGA1_c02350at 211.926 kb on - strand, within PGA1_c02350at 211.976 kb on + strand, within PGA1_c02350at 211.977 kb on - strand, within PGA1_c02350at 212.044 kb on + strand, within PGA1_c02350at 212.089 kb on - strand, within PGA1_c02350at 212.174 kb on + strandat 212.181 kb on + strandat 212.181 kb on + strandat 212.181 kb on + strandat 212.182 kb on - strandat 212.182 kb on - strandat 212.182 kb on - strandat 212.182 kb on - strandat 212.182 kb on - strandat 212.191 kb on + strandat 212.191 kb on + strandat 212.191 kb on + strandat 212.191 kb on + strandat 212.199 kb on - strandat 212.252 kb on - strandat 212.252 kb on - strandat 212.264 kb on + strandat 212.342 kb on - strandat 212.414 kb on + strandat 212.414 kb on + strandat 212.424 kb on - strandat 212.476 kb on + strandat 212.513 kb on + strandat 212.523 kb on - strandat 212.523 kb on - strandat 212.525 kb on + strandat 212.533 kb on + strandat 212.533 kb on + strandat 212.541 kb on - strandat 212.594 kb on + strandat 212.594 kb on + strandat 212.601 kb on + strandat 212.634 kb on + strandat 212.637 kb on - strandat 212.642 kb on - strandat 212.644 kb on + strandat 212.678 kb on + strandat 212.688 kb on - strandat 212.708 kb on - strandat 212.728 kb on + strandat 212.728 kb on + strandat 212.741 kb on + strand, within PGA1_c02360at 212.761 kb on + strand, within PGA1_c02360at 212.769 kb on - strand, within PGA1_c02360at 212.800 kb on + strand, within PGA1_c02360at 212.808 kb on - strand, within PGA1_c02360at 212.808 kb on - strand, within PGA1_c02360at 212.823 kb on - strand, within PGA1_c02360at 212.844 kb on - strand, within PGA1_c02360at 212.850 kb on - strand, within PGA1_c02360at 212.858 kb on - strand, within PGA1_c02360at 212.861 kb on + strand, within PGA1_c02360at 212.861 kb on + strand, within PGA1_c02360at 212.861 kb on + strand, within PGA1_c02360at 212.861 kb on + strand, within PGA1_c02360at 212.863 kb on - strand, within PGA1_c02360at 212.883 kb on + strand, within PGA1_c02360at 212.895 kb on - strand, within PGA1_c02360at 212.918 kb on - strand, within PGA1_c02360at 212.928 kb on - strand, within PGA1_c02360at 212.993 kb on + strand, within PGA1_c02360at 213.074 kb on + strand, within PGA1_c02360at 213.074 kb on + strand, within PGA1_c02360at 213.074 kb on + strand, within PGA1_c02360at 213.079 kb on + strand, within PGA1_c02360at 213.082 kb on - strand, within PGA1_c02360at 213.082 kb on - strand, within PGA1_c02360at 213.082 kb on - strand, within PGA1_c02360at 213.082 kb on - strand, within PGA1_c02360at 213.082 kb on - strand, within PGA1_c02360at 213.091 kb on + strand, within PGA1_c02360at 213.108 kb on - strand, within PGA1_c02360at 213.119 kb on + strand, within PGA1_c02360at 213.167 kb on + strand, within PGA1_c02360at 213.177 kb on + strand, within PGA1_c02360at 213.212 kb on - strand, within PGA1_c02360at 213.232 kb on - strand, within PGA1_c02360at 213.245 kb on + strand, within PGA1_c02360at 213.259 kb on + strand, within PGA1_c02360at 213.267 kb on - strand, within PGA1_c02360at 213.293 kb on + strand, within PGA1_c02360at 213.301 kb on - strand, within PGA1_c02360at 213.420 kb on + strand, within PGA1_c02360at 213.483 kb on - strand, within PGA1_c02360at 213.497 kb on - strand, within PGA1_c02360at 213.555 kb on - strand, within PGA1_c02360at 213.578 kb on + strand, within PGA1_c02360at 213.588 kb on + strand, within PGA1_c02360at 213.661 kb on + strand, within PGA1_c02360at 213.669 kb on - strand, within PGA1_c02360at 213.669 kb on - strand, within PGA1_c02360at 213.669 kb on - strand, within PGA1_c02360at 213.669 kb on - strand, within PGA1_c02360at 213.669 kb on - strand, within PGA1_c02360at 213.694 kb on + strand, within PGA1_c02360at 213.707 kb on - strand, within PGA1_c02360at 213.712 kb on - strand, within PGA1_c02360at 213.746 kb on - strand, within PGA1_c02360at 213.751 kb on - strand, within PGA1_c02360at 213.787 kb on + strand, within PGA1_c02360at 213.796 kb on - strand, within PGA1_c02360at 213.852 kb on - strandat 213.856 kb on + strandat 213.885 kb on + strandat 213.899 kb on - strandat 213.944 kb on - strandat 213.960 kb on - strandat 214.019 kb on - strandat 214.019 kb on - strandat 214.025 kb on + strandat 214.025 kb on + strandat 214.033 kb on - strandat 214.033 kb on - strandat 214.033 kb on - strandat 214.080 kb on - strandat 214.092 kb on + strandat 214.093 kb on + strandat 214.093 kb on + strandat 214.101 kb on - strandat 214.101 kb on - strandat 214.103 kb on - strandat 214.105 kb on - strandat 214.110 kb on - strandat 214.110 kb on - strandat 214.157 kb on - strand, within PGA1_c02370at 214.157 kb on - strand, within PGA1_c02370at 214.157 kb on - strand, within PGA1_c02370at 214.163 kb on - strand, within PGA1_c02370at 214.209 kb on + strand, within PGA1_c02370at 214.218 kb on + strand, within PGA1_c02370at 214.244 kb on + strand, within PGA1_c02370at 214.253 kb on + strand, within PGA1_c02370at 214.279 kb on - strand, within PGA1_c02370at 214.279 kb on - strand, within PGA1_c02370at 214.281 kb on + strand, within PGA1_c02370at 214.289 kb on - strand, within PGA1_c02370at 214.303 kb on - strand, within PGA1_c02370at 214.355 kb on + strand, within PGA1_c02370at 214.393 kb on - strand, within PGA1_c02370at 214.431 kb on + strand, within PGA1_c02370at 214.441 kb on + strand, within PGA1_c02370at 214.441 kb on + strand, within PGA1_c02370at 214.441 kb on + strand, within PGA1_c02370at 214.449 kb on - strand, within PGA1_c02370at 214.472 kb on - strand, within PGA1_c02370at 214.490 kb on + strand, within PGA1_c02370at 214.498 kb on - strand, within PGA1_c02370at 214.498 kb on - strand, within PGA1_c02370at 214.517 kb on + strand, within PGA1_c02370at 214.517 kb on + strand, within PGA1_c02370at 214.517 kb on + strand, within PGA1_c02370at 214.525 kb on - strand, within PGA1_c02370at 214.532 kb on + strand, within PGA1_c02370at 214.617 kb on + strand, within PGA1_c02370at 214.637 kb on + strand, within PGA1_c02370at 214.725 kb on + strand, within PGA1_c02370at 214.754 kb on + strand, within PGA1_c02370at 214.759 kb on - strand, within PGA1_c02370at 214.767 kb on - strand, within PGA1_c02370at 214.782 kb on + strand, within PGA1_c02370at 214.782 kb on + strand, within PGA1_c02370at 214.790 kb on - strand, within PGA1_c02370at 214.828 kb on - strand, within PGA1_c02370at 214.848 kb on + strand, within PGA1_c02370at 214.851 kb on - strand, within PGA1_c02370at 214.856 kb on - strand, within PGA1_c02370at 214.856 kb on - strand, within PGA1_c02370at 214.856 kb on - strand, within PGA1_c02370at 214.870 kb on + strand, within PGA1_c02370at 214.889 kb on - strand, within PGA1_c02370at 214.891 kb on - strand, within PGA1_c02370at 214.894 kb on + strand, within PGA1_c02370

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.002 mg/ml
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211,633 - PGA1_c02350 0.30 -1.0
211,644 + PGA1_c02350 0.32 -0.6
211,687 + PGA1_c02350 0.37 +0.1
211,688 - PGA1_c02350 0.37 +1.5
211,722 + PGA1_c02350 0.41 +1.1
211,722 + PGA1_c02350 0.41 +1.0
211,722 + PGA1_c02350 0.41 +0.9
211,732 - PGA1_c02350 0.42 +1.5
211,748 + PGA1_c02350 0.44 +1.4
211,768 + PGA1_c02350 0.46 +0.8
211,768 + PGA1_c02350 0.46 -0.4
211,768 + PGA1_c02350 0.46 +1.0
211,768 + PGA1_c02350 0.46 -0.7
211,768 + PGA1_c02350 0.46 -0.5
211,768 + PGA1_c02350 0.46 -1.1
211,768 + PGA1_c02350 0.46 +1.3
211,768 + PGA1_c02350 0.46 -0.4
211,768 + PGA1_c02350 0.46 -0.6
211,768 + PGA1_c02350 0.46 +0.1
211,768 + PGA1_c02350 0.46 +0.1
211,768 + PGA1_c02350 0.46 +1.8
211,768 + PGA1_c02350 0.46 -0.4
211,768 + PGA1_c02350 0.46 +1.8
211,776 - PGA1_c02350 0.47 -1.0
211,776 - PGA1_c02350 0.47 -0.7
211,776 - PGA1_c02350 0.47 -0.0
211,776 - PGA1_c02350 0.47 +0.3
211,776 - PGA1_c02350 0.47 +1.1
211,776 - PGA1_c02350 0.47 +1.0
211,776 - PGA1_c02350 0.47 +1.0
211,776 - PGA1_c02350 0.47 -0.0
211,776 - PGA1_c02350 0.47 -0.1
211,777 + PGA1_c02350 0.47 +1.7
211,838 + PGA1_c02350 0.55 +0.9
211,912 - PGA1_c02350 0.63 +1.4
211,913 + PGA1_c02350 0.64 -1.4
211,918 + PGA1_c02350 0.64 -0.0
211,918 + PGA1_c02350 0.64 -0.6
211,918 + PGA1_c02350 0.64 -0.5
211,918 + PGA1_c02350 0.64 -0.0
211,918 + PGA1_c02350 0.64 +0.3
211,918 + PGA1_c02350 0.64 +2.0
211,918 + PGA1_c02350 0.64 -1.4
211,918 + PGA1_c02350 0.64 -1.8
211,918 + PGA1_c02350 0.64 -1.0
211,918 + PGA1_c02350 0.64 -0.0
211,921 - PGA1_c02350 0.65 -1.7
211,921 - PGA1_c02350 0.65 +0.5
211,921 - PGA1_c02350 0.65 -0.6
211,921 - PGA1_c02350 0.65 -0.5
211,921 - PGA1_c02350 0.65 +0.7
211,926 - PGA1_c02350 0.65 -1.5
211,926 - PGA1_c02350 0.65 +4.5
211,926 - PGA1_c02350 0.65 -1.0
211,926 - PGA1_c02350 0.65 +0.4
211,976 + PGA1_c02350 0.71 -0.0
211,977 - PGA1_c02350 0.71 +1.5
212,044 + PGA1_c02350 0.79 +0.6
212,089 - PGA1_c02350 0.85 +1.3
212,174 + +0.4
212,181 + +2.1
212,181 + -1.4
212,181 + -0.7
212,182 - -1.6
212,182 - -0.2
212,182 - +0.1
212,182 - -1.1
212,182 - +0.3
212,191 + -1.6
212,191 + +0.3
212,191 + -0.0
212,191 + -0.3
212,199 - -0.1
212,252 - +0.6
212,252 - -0.6
212,264 + +0.1
212,342 - +0.2
212,414 + +0.6
212,414 + +0.6
212,424 - -0.0
212,476 + +1.8
212,513 + -0.8
212,523 - +0.7
212,523 - +1.2
212,525 + -1.2
212,533 + +0.6
212,533 + +0.2
212,541 - -0.2
212,594 + -0.1
212,594 + +0.9
212,601 + -0.9
212,634 + +1.2
212,637 - +1.4
212,642 - +0.4
212,644 + +0.5
212,678 + +0.4
212,688 - -0.1
212,708 - +0.1
212,728 + +0.3
212,728 + -0.7
212,741 + PGA1_c02360 0.10 -0.1
212,761 + PGA1_c02360 0.12 -0.9
212,769 - PGA1_c02360 0.13 -0.4
212,800 + PGA1_c02360 0.15 -0.2
212,808 - PGA1_c02360 0.16 +1.7
212,808 - PGA1_c02360 0.16 -0.6
212,823 - PGA1_c02360 0.17 +0.9
212,844 - PGA1_c02360 0.18 +0.2
212,850 - PGA1_c02360 0.19 -0.0
212,858 - PGA1_c02360 0.19 +0.1
212,861 + PGA1_c02360 0.19 +0.5
212,861 + PGA1_c02360 0.19 -1.1
212,861 + PGA1_c02360 0.19 +0.7
212,861 + PGA1_c02360 0.19 +0.9
212,863 - PGA1_c02360 0.20 +0.4
212,883 + PGA1_c02360 0.21 +0.4
212,895 - PGA1_c02360 0.22 -0.3
212,918 - PGA1_c02360 0.24 -1.9
212,928 - PGA1_c02360 0.25 +0.2
212,993 + PGA1_c02360 0.29 +0.8
213,074 + PGA1_c02360 0.36 +0.6
213,074 + PGA1_c02360 0.36 +0.1
213,074 + PGA1_c02360 0.36 -0.5
213,079 + PGA1_c02360 0.36 -0.1
213,082 - PGA1_c02360 0.36 +0.3
213,082 - PGA1_c02360 0.36 +0.8
213,082 - PGA1_c02360 0.36 +1.3
213,082 - PGA1_c02360 0.36 -0.1
213,082 - PGA1_c02360 0.36 +0.1
213,091 + PGA1_c02360 0.37 -0.1
213,108 - PGA1_c02360 0.38 +0.4
213,119 + PGA1_c02360 0.39 +0.0
213,167 + PGA1_c02360 0.43 -0.2
213,177 + PGA1_c02360 0.43 -0.5
213,212 - PGA1_c02360 0.46 +0.8
213,232 - PGA1_c02360 0.47 +1.1
213,245 + PGA1_c02360 0.48 -0.4
213,259 + PGA1_c02360 0.49 +1.1
213,267 - PGA1_c02360 0.50 -0.2
213,293 + PGA1_c02360 0.52 -0.1
213,301 - PGA1_c02360 0.53 +1.2
213,420 + PGA1_c02360 0.62 -0.4
213,483 - PGA1_c02360 0.66 -0.6
213,497 - PGA1_c02360 0.67 -0.6
213,555 - PGA1_c02360 0.72 -0.4
213,578 + PGA1_c02360 0.73 +0.4
213,588 + PGA1_c02360 0.74 +0.8
213,661 + PGA1_c02360 0.80 +0.4
213,669 - PGA1_c02360 0.80 +1.0
213,669 - PGA1_c02360 0.80 -0.3
213,669 - PGA1_c02360 0.80 -0.1
213,669 - PGA1_c02360 0.80 +0.9
213,669 - PGA1_c02360 0.80 +0.9
213,694 + PGA1_c02360 0.82 -0.4
213,707 - PGA1_c02360 0.83 +0.8
213,712 - PGA1_c02360 0.84 -0.9
213,746 - PGA1_c02360 0.86 -0.7
213,751 - PGA1_c02360 0.86 +0.4
213,787 + PGA1_c02360 0.89 -1.5
213,796 - PGA1_c02360 0.90 +1.3
213,852 - -1.2
213,856 + -0.4
213,885 + +0.0
213,899 - +1.1
213,944 - +1.1
213,960 - -0.1
214,019 - -1.2
214,019 - -0.8
214,025 + +2.5
214,025 + -0.6
214,033 - -1.6
214,033 - +0.7
214,033 - +0.9
214,080 - +0.8
214,092 + -0.6
214,093 + -1.2
214,093 + +0.1
214,101 - +0.8
214,101 - -0.1
214,103 - +0.2
214,105 - +0.3
214,110 - -0.3
214,110 - +1.1
214,157 - PGA1_c02370 0.10 -0.2
214,157 - PGA1_c02370 0.10 -0.2
214,157 - PGA1_c02370 0.10 +0.5
214,163 - PGA1_c02370 0.11 +0.6
214,209 + PGA1_c02370 0.15 +0.3
214,218 + PGA1_c02370 0.16 -2.3
214,244 + PGA1_c02370 0.18 +0.6
214,253 + PGA1_c02370 0.19 +1.5
214,279 - PGA1_c02370 0.21 -0.1
214,279 - PGA1_c02370 0.21 -0.1
214,281 + PGA1_c02370 0.22 +0.3
214,289 - PGA1_c02370 0.22 -0.1
214,303 - PGA1_c02370 0.24 +0.7
214,355 + PGA1_c02370 0.28 -2.2
214,393 - PGA1_c02370 0.32 -0.8
214,431 + PGA1_c02370 0.35 +2.1
214,441 + PGA1_c02370 0.36 +1.5
214,441 + PGA1_c02370 0.36 +0.6
214,441 + PGA1_c02370 0.36 -1.4
214,449 - PGA1_c02370 0.37 -0.2
214,472 - PGA1_c02370 0.39 +0.6
214,490 + PGA1_c02370 0.40 +0.9
214,498 - PGA1_c02370 0.41 -0.4
214,498 - PGA1_c02370 0.41 -0.9
214,517 + PGA1_c02370 0.43 -0.5
214,517 + PGA1_c02370 0.43 -1.8
214,517 + PGA1_c02370 0.43 +0.2
214,525 - PGA1_c02370 0.44 -1.5
214,532 + PGA1_c02370 0.44 +1.1
214,617 + PGA1_c02370 0.52 +0.7
214,637 + PGA1_c02370 0.54 -0.2
214,725 + PGA1_c02370 0.62 -0.5
214,754 + PGA1_c02370 0.64 -1.9
214,759 - PGA1_c02370 0.65 -0.1
214,767 - PGA1_c02370 0.65 -2.1
214,782 + PGA1_c02370 0.67 -0.4
214,782 + PGA1_c02370 0.67 -0.1
214,790 - PGA1_c02370 0.67 -0.1
214,828 - PGA1_c02370 0.71 +0.8
214,848 + PGA1_c02370 0.73 +1.3
214,851 - PGA1_c02370 0.73 -1.4
214,856 - PGA1_c02370 0.73 -1.1
214,856 - PGA1_c02370 0.73 +1.1
214,856 - PGA1_c02370 0.73 -0.3
214,870 + PGA1_c02370 0.75 +0.9
214,889 - PGA1_c02370 0.76 -0.4
214,891 - PGA1_c02370 0.77 -0.8
214,894 + PGA1_c02370 0.77 +0.9

Or see this region's nucleotide sequence