Experiment: m.b. Gentamicin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02090 and PGA1_c02100 are separated by 439 nucleotides PGA1_c02100 and PGA1_c02110 are separated by 66 nucleotides
PGA1_c02090: PGA1_c02090 - inner membrane protein OxaA, at 190,651 to 192,468
_c02090
PGA1_c02100: PGA1_c02100 - diguanylate cyclase (GGDEF) domain-containing protein, at 192,908 to 194,452
_c02100
PGA1_c02110: PGA1_c02110 - tRNA 2-thiocytidine biosynthesis protein TtcA, at 194,519 to 195,406
_c02110
Position (kb) 192
193
194
195 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 192.549 kb on + strand at 192.580 kb on + strand at 192.667 kb on + strand at 192.715 kb on + strand at 192.723 kb on - strand at 192.743 kb on - strand at 192.743 kb on - strand at 192.743 kb on - strand at 192.743 kb on - strand at 192.743 kb on - strand at 192.743 kb on - strand at 192.743 kb on - strand at 192.743 kb on - strand at 192.743 kb on - strand at 192.785 kb on + strand at 192.785 kb on + strand at 192.799 kb on + strand at 192.804 kb on + strand at 192.807 kb on - strand at 192.812 kb on - strand at 192.834 kb on - strand at 192.863 kb on + strand at 192.868 kb on + strand at 192.897 kb on - strand at 192.982 kb on + strand at 193.014 kb on - strand at 193.018 kb on + strand at 193.093 kb on + strand, within PGA1_c02100 at 193.093 kb on + strand, within PGA1_c02100 at 193.096 kb on - strand, within PGA1_c02100 at 193.149 kb on - strand, within PGA1_c02100 at 193.149 kb on - strand, within PGA1_c02100 at 193.190 kb on - strand, within PGA1_c02100 at 193.205 kb on + strand, within PGA1_c02100 at 193.205 kb on - strand, within PGA1_c02100 at 193.213 kb on - strand, within PGA1_c02100 at 193.225 kb on + strand, within PGA1_c02100 at 193.226 kb on + strand, within PGA1_c02100 at 193.329 kb on + strand, within PGA1_c02100 at 193.339 kb on + strand, within PGA1_c02100 at 193.347 kb on - strand, within PGA1_c02100 at 193.373 kb on - strand, within PGA1_c02100 at 193.381 kb on + strand, within PGA1_c02100 at 193.386 kb on + strand, within PGA1_c02100 at 193.410 kb on + strand, within PGA1_c02100 at 193.420 kb on + strand, within PGA1_c02100 at 193.428 kb on - strand, within PGA1_c02100 at 193.449 kb on - strand, within PGA1_c02100 at 193.456 kb on + strand, within PGA1_c02100 at 193.473 kb on + strand, within PGA1_c02100 at 193.497 kb on + strand, within PGA1_c02100 at 193.524 kb on + strand, within PGA1_c02100 at 193.591 kb on + strand, within PGA1_c02100 at 193.599 kb on - strand, within PGA1_c02100 at 193.649 kb on - strand, within PGA1_c02100 at 193.795 kb on + strand, within PGA1_c02100 at 193.800 kb on + strand, within PGA1_c02100 at 193.834 kb on + strand, within PGA1_c02100 at 193.834 kb on + strand, within PGA1_c02100 at 193.903 kb on - strand, within PGA1_c02100 at 193.930 kb on - strand, within PGA1_c02100 at 193.985 kb on - strand, within PGA1_c02100 at 194.019 kb on + strand, within PGA1_c02100 at 194.027 kb on - strand, within PGA1_c02100 at 194.072 kb on - strand, within PGA1_c02100 at 194.151 kb on - strand, within PGA1_c02100 at 194.174 kb on + strand, within PGA1_c02100 at 194.174 kb on + strand, within PGA1_c02100 at 194.174 kb on + strand, within PGA1_c02100 at 194.174 kb on + strand, within PGA1_c02100 at 194.182 kb on - strand, within PGA1_c02100 at 194.182 kb on - strand, within PGA1_c02100 at 194.182 kb on - strand, within PGA1_c02100 at 194.182 kb on - strand, within PGA1_c02100 at 194.182 kb on - strand, within PGA1_c02100 at 194.204 kb on - strand, within PGA1_c02100 at 194.240 kb on + strand, within PGA1_c02100 at 194.248 kb on - strand, within PGA1_c02100 at 194.248 kb on - strand, within PGA1_c02100 at 194.430 kb on - strand at 194.453 kb on + strand at 194.453 kb on + strand at 194.461 kb on - strand at 194.468 kb on - strand at 194.494 kb on - strand at 194.500 kb on - strand at 194.596 kb on + strand at 194.604 kb on - strand at 194.625 kb on + strand, within PGA1_c02110 at 194.633 kb on - strand, within PGA1_c02110 at 194.659 kb on + strand, within PGA1_c02110 at 194.669 kb on + strand, within PGA1_c02110 at 194.719 kb on + strand, within PGA1_c02110 at 194.946 kb on - strand, within PGA1_c02110 at 194.946 kb on - strand, within PGA1_c02110 at 194.946 kb on - strand, within PGA1_c02110 at 194.946 kb on - strand, within PGA1_c02110 at 194.975 kb on - strand, within PGA1_c02110 at 194.991 kb on + strand, within PGA1_c02110 at 194.992 kb on - strand, within PGA1_c02110 at 195.025 kb on - strand, within PGA1_c02110 at 195.128 kb on - strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.208 kb on + strand, within PGA1_c02110 at 195.210 kb on + strand, within PGA1_c02110 at 195.210 kb on + strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.216 kb on - strand, within PGA1_c02110 at 195.218 kb on + strand, within PGA1_c02110 at 195.255 kb on - strand, within PGA1_c02110 at 195.272 kb on + strand, within PGA1_c02110 at 195.415 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.002 mg/ml remove 192,549 + -1.6 192,580 + +0.4 192,667 + +2.5 192,715 + -0.4 192,723 - +3.8 192,743 - +1.4 192,743 - +0.9 192,743 - +2.5 192,743 - +0.9 192,743 - +0.4 192,743 - +0.5 192,743 - +0.1 192,743 - -0.6 192,743 - +1.4 192,785 + +0.2 192,785 + +0.4 192,799 + -0.3 192,804 + -0.4 192,807 - +0.9 192,812 - +0.9 192,834 - +1.4 192,863 + -0.4 192,868 + -2.2 192,897 - +0.6 192,982 + -0.8 193,014 - +0.5 193,018 + +1.3 193,093 + PGA1_c02100 0.12 +0.2 193,093 + PGA1_c02100 0.12 +0.9 193,096 - PGA1_c02100 0.12 -1.4 193,149 - PGA1_c02100 0.16 -0.1 193,149 - PGA1_c02100 0.16 -0.4 193,190 - PGA1_c02100 0.18 -0.6 193,205 + PGA1_c02100 0.19 -1.2 193,205 - PGA1_c02100 0.19 -2.9 193,213 - PGA1_c02100 0.20 -0.6 193,225 + PGA1_c02100 0.21 +0.4 193,226 + PGA1_c02100 0.21 -0.6 193,329 + PGA1_c02100 0.27 +0.3 193,339 + PGA1_c02100 0.28 -1.6 193,347 - PGA1_c02100 0.28 -2.1 193,373 - PGA1_c02100 0.30 +2.3 193,381 + PGA1_c02100 0.31 +1.9 193,386 + PGA1_c02100 0.31 -0.8 193,410 + PGA1_c02100 0.32 +2.3 193,420 + PGA1_c02100 0.33 -0.2 193,428 - PGA1_c02100 0.34 -1.6 193,449 - PGA1_c02100 0.35 -2.9 193,456 + PGA1_c02100 0.35 -1.1 193,473 + PGA1_c02100 0.37 +0.4 193,497 + PGA1_c02100 0.38 -0.6 193,524 + PGA1_c02100 0.40 -0.5 193,591 + PGA1_c02100 0.44 -1.8 193,599 - PGA1_c02100 0.45 -1.1 193,649 - PGA1_c02100 0.48 -0.1 193,795 + PGA1_c02100 0.57 +3.5 193,800 + PGA1_c02100 0.58 -1.7 193,834 + PGA1_c02100 0.60 -1.3 193,834 + PGA1_c02100 0.60 -3.9 193,903 - PGA1_c02100 0.64 -2.9 193,930 - PGA1_c02100 0.66 +0.8 193,985 - PGA1_c02100 0.70 +0.5 194,019 + PGA1_c02100 0.72 -0.3 194,027 - PGA1_c02100 0.72 +0.9 194,072 - PGA1_c02100 0.75 -0.4 194,151 - PGA1_c02100 0.80 -1.5 194,174 + PGA1_c02100 0.82 -1.1 194,174 + PGA1_c02100 0.82 -0.9 194,174 + PGA1_c02100 0.82 -1.1 194,174 + PGA1_c02100 0.82 -0.4 194,182 - PGA1_c02100 0.82 -1.3 194,182 - PGA1_c02100 0.82 -1.9 194,182 - PGA1_c02100 0.82 -0.6 194,182 - PGA1_c02100 0.82 -0.1 194,182 - PGA1_c02100 0.82 -0.4 194,204 - PGA1_c02100 0.84 +0.8 194,240 + PGA1_c02100 0.86 -1.1 194,248 - PGA1_c02100 0.87 +0.9 194,248 - PGA1_c02100 0.87 +0.2 194,430 - -0.8 194,453 + -1.6 194,453 + -0.5 194,461 - +0.9 194,468 - -0.1 194,494 - +0.1 194,500 - -2.0 194,596 + +1.7 194,604 - +0.3 194,625 + PGA1_c02110 0.12 +0.9 194,633 - PGA1_c02110 0.13 -0.1 194,659 + PGA1_c02110 0.16 +0.8 194,669 + PGA1_c02110 0.17 -1.1 194,719 + PGA1_c02110 0.23 +0.8 194,946 - PGA1_c02110 0.48 +0.4 194,946 - PGA1_c02110 0.48 +0.1 194,946 - PGA1_c02110 0.48 +0.9 194,946 - PGA1_c02110 0.48 -0.9 194,975 - PGA1_c02110 0.51 +0.6 194,991 + PGA1_c02110 0.53 +0.2 194,992 - PGA1_c02110 0.53 -0.3 195,025 - PGA1_c02110 0.57 +0.8 195,128 - PGA1_c02110 0.69 +0.8 195,208 + PGA1_c02110 0.78 +1.2 195,208 + PGA1_c02110 0.78 -1.1 195,208 + PGA1_c02110 0.78 -0.4 195,208 + PGA1_c02110 0.78 -0.5 195,208 + PGA1_c02110 0.78 +1.1 195,208 + PGA1_c02110 0.78 +0.2 195,208 + PGA1_c02110 0.78 -0.8 195,208 + PGA1_c02110 0.78 -1.1 195,208 + PGA1_c02110 0.78 -2.2 195,208 + PGA1_c02110 0.78 +0.9 195,208 + PGA1_c02110 0.78 +0.4 195,208 + PGA1_c02110 0.78 +1.9 195,208 + PGA1_c02110 0.78 +0.2 195,208 + PGA1_c02110 0.78 +0.5 195,208 + PGA1_c02110 0.78 +0.9 195,208 + PGA1_c02110 0.78 +1.3 195,208 + PGA1_c02110 0.78 +0.5 195,208 + PGA1_c02110 0.78 +1.1 195,208 + PGA1_c02110 0.78 +0.3 195,208 + PGA1_c02110 0.78 +0.9 195,208 + PGA1_c02110 0.78 +0.1 195,210 + PGA1_c02110 0.78 +0.6 195,210 + PGA1_c02110 0.78 +0.3 195,216 - PGA1_c02110 0.78 +0.5 195,216 - PGA1_c02110 0.78 -0.1 195,216 - PGA1_c02110 0.78 -2.1 195,216 - PGA1_c02110 0.78 +0.9 195,216 - PGA1_c02110 0.78 -0.1 195,216 - PGA1_c02110 0.78 +0.4 195,216 - PGA1_c02110 0.78 +2.4 195,216 - PGA1_c02110 0.78 +0.3 195,216 - PGA1_c02110 0.78 -0.1 195,216 - PGA1_c02110 0.78 -0.5 195,216 - PGA1_c02110 0.78 +0.5 195,216 - PGA1_c02110 0.78 +0.4 195,216 - PGA1_c02110 0.78 -0.4 195,216 - PGA1_c02110 0.78 +0.7 195,216 - PGA1_c02110 0.78 -0.9 195,216 - PGA1_c02110 0.78 -0.4 195,216 - PGA1_c02110 0.78 +0.5 195,216 - PGA1_c02110 0.78 -1.9 195,216 - PGA1_c02110 0.78 +2.4 195,216 - PGA1_c02110 0.78 -1.4 195,216 - PGA1_c02110 0.78 -0.5 195,216 - PGA1_c02110 0.78 +0.9 195,216 - PGA1_c02110 0.78 -0.6 195,216 - PGA1_c02110 0.78 -0.1 195,216 - PGA1_c02110 0.78 +0.4 195,216 - PGA1_c02110 0.78 +3.5 195,216 - PGA1_c02110 0.78 -1.1 195,216 - PGA1_c02110 0.78 +0.9 195,216 - PGA1_c02110 0.78 +0.9 195,216 - PGA1_c02110 0.78 -0.4 195,218 + PGA1_c02110 0.79 +0.9 195,255 - PGA1_c02110 0.83 +0.5 195,272 + PGA1_c02110 0.85 +0.1 195,415 - +0.8
Or see this region's nucleotide sequence