Strain Fitness in Marinobacter adhaerens HP15 around HP15_1674

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1673 and HP15_1674 are separated by 98 nucleotidesHP15_1674 and HP15_1675 are separated by 157 nucleotidesHP15_1675 and HP15_1676 are separated by 53 nucleotides HP15_1673: HP15_1673 - NmrA family protein, at 1,762,991 to 1,763,833 _1673 HP15_1674: HP15_1674 - conserved hypothetical protein, membrane, at 1,763,932 to 1,764,348 _1674 HP15_1675: HP15_1675 - hypothetical protein, at 1,764,506 to 1,764,793 _1675 HP15_1676: HP15_1676 - protein containing alkylhydroperoxidase AhpD core / Carboxymuconolactone decarboxylase, at 1,764,847 to 1,765,428 _1676 Position (kb) 1763 1764 1765Strain fitness (log2 ratio) -1 0 1 2at 1763.071 kb on + strandat 1763.239 kb on - strand, within HP15_1673at 1763.239 kb on - strand, within HP15_1673at 1763.307 kb on + strand, within HP15_1673at 1763.309 kb on + strand, within HP15_1673at 1763.317 kb on - strand, within HP15_1673at 1763.381 kb on - strand, within HP15_1673at 1763.414 kb on + strand, within HP15_1673at 1763.422 kb on - strand, within HP15_1673at 1763.422 kb on - strand, within HP15_1673at 1763.515 kb on - strand, within HP15_1673at 1763.555 kb on + strand, within HP15_1673at 1763.563 kb on - strand, within HP15_1673at 1763.629 kb on + strand, within HP15_1673at 1763.648 kb on + strand, within HP15_1673at 1763.695 kb on - strand, within HP15_1673at 1763.745 kb on + strand, within HP15_1673at 1763.798 kb on - strandat 1763.889 kb on + strandat 1763.892 kb on - strandat 1763.991 kb on - strand, within HP15_1674at 1764.013 kb on - strand, within HP15_1674at 1764.029 kb on + strand, within HP15_1674at 1764.089 kb on + strand, within HP15_1674at 1764.095 kb on + strand, within HP15_1674at 1764.178 kb on + strand, within HP15_1674at 1764.206 kb on + strand, within HP15_1674at 1764.239 kb on - strand, within HP15_1674at 1764.306 kb on + strand, within HP15_1674at 1764.336 kb on - strandat 1764.362 kb on + strandat 1764.394 kb on + strandat 1764.402 kb on - strandat 1764.404 kb on + strandat 1764.470 kb on - strandat 1764.561 kb on + strand, within HP15_1675at 1764.709 kb on - strand, within HP15_1675at 1764.723 kb on - strand, within HP15_1675at 1764.930 kb on - strand, within HP15_1676at 1764.975 kb on - strand, within HP15_1676at 1764.975 kb on - strand, within HP15_1676at 1764.975 kb on - strand, within HP15_1676at 1765.022 kb on + strand, within HP15_1676at 1765.028 kb on - strand, within HP15_1676at 1765.226 kb on + strand, within HP15_1676at 1765.253 kb on - strand, within HP15_1676at 1765.328 kb on + strand, within HP15_1676at 1765.329 kb on - strand, within HP15_1676at 1765.336 kb on - strand, within HP15_1676at 1765.336 kb on - strand, within HP15_1676

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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1,763,071 + +0.1
1,763,239 - HP15_1673 0.29 -0.5
1,763,239 - HP15_1673 0.29 -1.7
1,763,307 + HP15_1673 0.37 +0.1
1,763,309 + HP15_1673 0.38 +0.2
1,763,317 - HP15_1673 0.39 +0.3
1,763,381 - HP15_1673 0.46 -0.9
1,763,414 + HP15_1673 0.50 +0.0
1,763,422 - HP15_1673 0.51 -0.4
1,763,422 - HP15_1673 0.51 +1.5
1,763,515 - HP15_1673 0.62 +0.1
1,763,555 + HP15_1673 0.67 +0.4
1,763,563 - HP15_1673 0.68 +0.3
1,763,629 + HP15_1673 0.76 +1.3
1,763,648 + HP15_1673 0.78 +0.0
1,763,695 - HP15_1673 0.84 +0.2
1,763,745 + HP15_1673 0.89 +2.5
1,763,798 - +0.1
1,763,889 + -0.2
1,763,892 - -0.2
1,763,991 - HP15_1674 0.14 -0.3
1,764,013 - HP15_1674 0.19 +1.0
1,764,029 + HP15_1674 0.23 +0.6
1,764,089 + HP15_1674 0.38 -0.3
1,764,095 + HP15_1674 0.39 +0.5
1,764,178 + HP15_1674 0.59 +0.3
1,764,206 + HP15_1674 0.66 +0.5
1,764,239 - HP15_1674 0.74 +1.3
1,764,306 + HP15_1674 0.90 +1.0
1,764,336 - +0.1
1,764,362 + +2.6
1,764,394 + +0.3
1,764,402 - +0.9
1,764,404 + -0.2
1,764,470 - +0.5
1,764,561 + HP15_1675 0.19 +0.3
1,764,709 - HP15_1675 0.70 -0.4
1,764,723 - HP15_1675 0.75 -0.2
1,764,930 - HP15_1676 0.14 +0.5
1,764,975 - HP15_1676 0.22 +0.5
1,764,975 - HP15_1676 0.22 +0.9
1,764,975 - HP15_1676 0.22 +0.3
1,765,022 + HP15_1676 0.30 +0.3
1,765,028 - HP15_1676 0.31 +0.4
1,765,226 + HP15_1676 0.65 +0.3
1,765,253 - HP15_1676 0.70 -0.2
1,765,328 + HP15_1676 0.83 +0.8
1,765,329 - HP15_1676 0.83 +0.1
1,765,336 - HP15_1676 0.84 +2.0
1,765,336 - HP15_1676 0.84 -0.1

Or see this region's nucleotide sequence