Experiment: m.b. Gentamicin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01530 and PGA1_c01540 are separated by 249 nucleotides PGA1_c01540 and PGA1_c01550 are separated by 17 nucleotides PGA1_c01550 and PGA1_c01560 overlap by 4 nucleotides PGA1_c01560 and PGA1_c01570 overlap by 4 nucleotides
PGA1_c01530: PGA1_c01530 - hypothetical protein, at 150,193 to 151,368
_c01530
PGA1_c01540: PGA1_c01540 - 30S ribosomal protein S10, at 151,618 to 151,938
_c01540
PGA1_c01550: PGA1_c01550 - 50S ribosomal protein L3, at 151,956 to 152,669
_c01550
PGA1_c01560: PGA1_c01560 - 50S ribosomal protein L4, at 152,666 to 153,283
_c01560
PGA1_c01570: PGA1_c01570 - 50S ribosomal protein L23, at 153,280 to 153,576
_c01570
Position (kb) 151
152
153 Strain fitness (log2 ratio) -2
-1
0
1
2 at 150.956 kb on + strand, within PGA1_c01530 at 150.956 kb on + strand, within PGA1_c01530 at 150.956 kb on + strand, within PGA1_c01530 at 150.956 kb on + strand, within PGA1_c01530 at 150.956 kb on + strand, within PGA1_c01530 at 150.956 kb on + strand, within PGA1_c01530 at 150.964 kb on - strand, within PGA1_c01530 at 150.971 kb on - strand, within PGA1_c01530 at 150.986 kb on - strand, within PGA1_c01530 at 150.990 kb on + strand, within PGA1_c01530 at 150.990 kb on + strand, within PGA1_c01530 at 150.998 kb on - strand, within PGA1_c01530 at 151.027 kb on + strand, within PGA1_c01530 at 151.027 kb on + strand, within PGA1_c01530 at 151.032 kb on + strand, within PGA1_c01530 at 151.032 kb on + strand, within PGA1_c01530 at 151.032 kb on + strand, within PGA1_c01530 at 151.032 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.037 kb on + strand, within PGA1_c01530 at 151.040 kb on - strand, within PGA1_c01530 at 151.040 kb on - strand, within PGA1_c01530 at 151.040 kb on - strand, within PGA1_c01530 at 151.040 kb on - strand, within PGA1_c01530 at 151.040 kb on - strand, within PGA1_c01530 at 151.040 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.045 kb on - strand, within PGA1_c01530 at 151.050 kb on - strand, within PGA1_c01530 at 151.053 kb on - strand, within PGA1_c01530 at 151.063 kb on + strand, within PGA1_c01530 at 151.071 kb on - strand, within PGA1_c01530 at 151.076 kb on - strand, within PGA1_c01530 at 151.076 kb on - strand, within PGA1_c01530 at 151.088 kb on - strand, within PGA1_c01530 at 151.090 kb on + strand, within PGA1_c01530 at 151.103 kb on + strand, within PGA1_c01530 at 151.103 kb on + strand, within PGA1_c01530 at 151.106 kb on + strand, within PGA1_c01530 at 151.111 kb on - strand, within PGA1_c01530 at 151.111 kb on - strand, within PGA1_c01530 at 151.114 kb on - strand, within PGA1_c01530 at 151.124 kb on - strand, within PGA1_c01530 at 151.134 kb on - strand, within PGA1_c01530 at 151.138 kb on + strand, within PGA1_c01530 at 151.158 kb on - strand, within PGA1_c01530 at 151.159 kb on + strand, within PGA1_c01530 at 151.184 kb on + strand, within PGA1_c01530 at 151.193 kb on + strand, within PGA1_c01530 at 151.197 kb on + strand, within PGA1_c01530 at 151.207 kb on + strand, within PGA1_c01530 at 151.219 kb on + strand, within PGA1_c01530 at 151.219 kb on + strand, within PGA1_c01530 at 151.219 kb on + strand, within PGA1_c01530 at 151.219 kb on + strand, within PGA1_c01530 at 151.227 kb on - strand, within PGA1_c01530 at 151.227 kb on - strand, within PGA1_c01530 at 151.227 kb on - strand, within PGA1_c01530 at 151.227 kb on - strand, within PGA1_c01530 at 151.264 kb on - strand at 151.264 kb on - strand at 151.270 kb on + strand at 151.280 kb on + strand at 151.281 kb on + strand at 151.283 kb on - strand at 151.288 kb on - strand at 151.288 kb on - strand at 151.291 kb on + strand at 151.298 kb on - strand at 151.313 kb on + strand at 151.327 kb on + strand at 151.327 kb on - strand at 151.327 kb on - strand at 151.335 kb on - strand at 151.335 kb on - strand at 151.353 kb on - strand at 151.368 kb on + strand at 151.368 kb on + strand at 151.373 kb on + strand at 151.373 kb on + strand at 151.373 kb on + strand at 151.373 kb on + strand at 151.373 kb on + strand at 151.376 kb on - strand at 151.376 kb on - strand at 151.381 kb on - strand at 151.381 kb on - strand at 151.389 kb on - strand at 151.395 kb on + strand at 151.399 kb on - strand at 151.403 kb on - strand at 151.412 kb on - strand at 151.416 kb on - strand at 151.434 kb on + strand at 151.435 kb on - strand at 151.435 kb on - strand at 151.442 kb on - strand at 151.465 kb on + strand at 151.473 kb on - strand at 153.645 kb on + strand at 153.645 kb on - strand at 153.653 kb on - strand at 153.653 kb on - strand at 153.656 kb on + strand at 153.656 kb on + strand at 153.656 kb on + strand at 153.656 kb on + strand at 153.656 kb on + strand at 153.661 kb on + strand at 153.661 kb on + strand at 153.663 kb on + strand at 153.663 kb on + strand at 153.663 kb on + strand at 153.663 kb on + strand at 153.666 kb on + strand at 153.669 kb on - strand at 153.669 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.002 mg/ml remove 150,956 + PGA1_c01530 0.65 +1.0 150,956 + PGA1_c01530 0.65 +0.8 150,956 + PGA1_c01530 0.65 +0.9 150,956 + PGA1_c01530 0.65 +0.2 150,956 + PGA1_c01530 0.65 +0.3 150,956 + PGA1_c01530 0.65 +0.4 150,964 - PGA1_c01530 0.66 +0.4 150,971 - PGA1_c01530 0.66 +0.0 150,986 - PGA1_c01530 0.67 -1.3 150,990 + PGA1_c01530 0.68 -0.6 150,990 + PGA1_c01530 0.68 +0.8 150,998 - PGA1_c01530 0.68 +0.7 151,027 + PGA1_c01530 0.71 +0.5 151,027 + PGA1_c01530 0.71 +1.2 151,032 + PGA1_c01530 0.71 +1.3 151,032 + PGA1_c01530 0.71 +1.0 151,032 + PGA1_c01530 0.71 +0.4 151,032 + PGA1_c01530 0.71 +0.2 151,037 + PGA1_c01530 0.72 +0.8 151,037 + PGA1_c01530 0.72 -0.8 151,037 + PGA1_c01530 0.72 +0.2 151,037 + PGA1_c01530 0.72 -1.2 151,037 + PGA1_c01530 0.72 +0.9 151,037 + PGA1_c01530 0.72 +0.4 151,037 + PGA1_c01530 0.72 +0.9 151,037 + PGA1_c01530 0.72 +0.7 151,037 + PGA1_c01530 0.72 +1.0 151,037 + PGA1_c01530 0.72 +1.1 151,037 + PGA1_c01530 0.72 +0.4 151,037 + PGA1_c01530 0.72 -0.1 151,037 + PGA1_c01530 0.72 +0.2 151,037 + PGA1_c01530 0.72 +0.2 151,037 + PGA1_c01530 0.72 +0.9 151,037 + PGA1_c01530 0.72 -0.6 151,037 + PGA1_c01530 0.72 +0.7 151,037 + PGA1_c01530 0.72 +0.2 151,037 + PGA1_c01530 0.72 -0.2 151,037 + PGA1_c01530 0.72 -0.6 151,037 + PGA1_c01530 0.72 +0.4 151,037 + PGA1_c01530 0.72 +1.3 151,037 + PGA1_c01530 0.72 +0.1 151,037 + PGA1_c01530 0.72 +0.2 151,037 + PGA1_c01530 0.72 +1.4 151,037 + PGA1_c01530 0.72 +0.7 151,037 + PGA1_c01530 0.72 +0.3 151,037 + PGA1_c01530 0.72 +1.8 151,037 + PGA1_c01530 0.72 +0.5 151,037 + PGA1_c01530 0.72 +1.6 151,037 + PGA1_c01530 0.72 +0.8 151,037 + PGA1_c01530 0.72 +1.2 151,037 + PGA1_c01530 0.72 +1.8 151,037 + PGA1_c01530 0.72 -1.5 151,037 + PGA1_c01530 0.72 -1.6 151,037 + PGA1_c01530 0.72 +0.2 151,037 + PGA1_c01530 0.72 +0.8 151,037 + PGA1_c01530 0.72 +1.2 151,037 + PGA1_c01530 0.72 +0.7 151,037 + PGA1_c01530 0.72 +0.4 151,037 + PGA1_c01530 0.72 +0.5 151,037 + PGA1_c01530 0.72 +0.6 151,037 + PGA1_c01530 0.72 +0.3 151,037 + PGA1_c01530 0.72 +0.5 151,037 + PGA1_c01530 0.72 +0.8 151,037 + PGA1_c01530 0.72 -0.3 151,037 + PGA1_c01530 0.72 -0.7 151,037 + PGA1_c01530 0.72 +0.1 151,037 + PGA1_c01530 0.72 +0.4 151,037 + PGA1_c01530 0.72 -1.6 151,037 + PGA1_c01530 0.72 +1.2 151,040 - PGA1_c01530 0.72 -0.2 151,040 - PGA1_c01530 0.72 -1.6 151,040 - PGA1_c01530 0.72 +0.6 151,040 - PGA1_c01530 0.72 +1.5 151,040 - PGA1_c01530 0.72 +1.4 151,040 - PGA1_c01530 0.72 -0.4 151,045 - PGA1_c01530 0.72 +1.9 151,045 - PGA1_c01530 0.72 +0.4 151,045 - PGA1_c01530 0.72 +0.9 151,045 - PGA1_c01530 0.72 -1.1 151,045 - PGA1_c01530 0.72 +0.6 151,045 - PGA1_c01530 0.72 -0.1 151,045 - PGA1_c01530 0.72 +1.8 151,045 - PGA1_c01530 0.72 +0.2 151,045 - PGA1_c01530 0.72 -0.9 151,045 - PGA1_c01530 0.72 +1.8 151,045 - PGA1_c01530 0.72 -0.4 151,045 - PGA1_c01530 0.72 -0.2 151,045 - PGA1_c01530 0.72 +0.1 151,045 - PGA1_c01530 0.72 -1.5 151,045 - PGA1_c01530 0.72 -1.1 151,045 - PGA1_c01530 0.72 +1.3 151,045 - PGA1_c01530 0.72 +0.3 151,045 - PGA1_c01530 0.72 -0.6 151,045 - PGA1_c01530 0.72 -0.0 151,045 - PGA1_c01530 0.72 +0.8 151,045 - PGA1_c01530 0.72 -0.7 151,045 - PGA1_c01530 0.72 -0.1 151,045 - PGA1_c01530 0.72 +0.3 151,045 - PGA1_c01530 0.72 +0.0 151,045 - PGA1_c01530 0.72 -0.1 151,045 - PGA1_c01530 0.72 +0.9 151,045 - PGA1_c01530 0.72 +0.4 151,045 - PGA1_c01530 0.72 +0.9 151,045 - PGA1_c01530 0.72 -0.1 151,045 - PGA1_c01530 0.72 +0.2 151,045 - PGA1_c01530 0.72 -1.6 151,045 - PGA1_c01530 0.72 +0.8 151,045 - PGA1_c01530 0.72 -0.8 151,045 - PGA1_c01530 0.72 +1.0 151,045 - PGA1_c01530 0.72 -0.7 151,045 - PGA1_c01530 0.72 +0.7 151,045 - PGA1_c01530 0.72 +0.6 151,045 - PGA1_c01530 0.72 -0.2 151,045 - PGA1_c01530 0.72 +0.2 151,050 - PGA1_c01530 0.73 -0.9 151,053 - PGA1_c01530 0.73 -0.2 151,063 + PGA1_c01530 0.74 -1.1 151,071 - PGA1_c01530 0.75 +0.8 151,076 - PGA1_c01530 0.75 -1.5 151,076 - PGA1_c01530 0.75 +0.3 151,088 - PGA1_c01530 0.76 +0.5 151,090 + PGA1_c01530 0.76 -0.8 151,103 + PGA1_c01530 0.77 +0.8 151,103 + PGA1_c01530 0.77 -0.6 151,106 + PGA1_c01530 0.78 -0.8 151,111 - PGA1_c01530 0.78 +1.0 151,111 - PGA1_c01530 0.78 +0.4 151,114 - PGA1_c01530 0.78 +0.7 151,124 - PGA1_c01530 0.79 +0.2 151,134 - PGA1_c01530 0.80 +1.3 151,138 + PGA1_c01530 0.80 +0.6 151,158 - PGA1_c01530 0.82 +0.4 151,159 + PGA1_c01530 0.82 +0.9 151,184 + PGA1_c01530 0.84 +0.3 151,193 + PGA1_c01530 0.85 +0.5 151,197 + PGA1_c01530 0.85 -0.7 151,207 + PGA1_c01530 0.86 +0.9 151,219 + PGA1_c01530 0.87 +0.1 151,219 + PGA1_c01530 0.87 +0.4 151,219 + PGA1_c01530 0.87 +0.8 151,219 + PGA1_c01530 0.87 +0.7 151,227 - PGA1_c01530 0.88 +0.6 151,227 - PGA1_c01530 0.88 +0.1 151,227 - PGA1_c01530 0.88 +1.5 151,227 - PGA1_c01530 0.88 -1.2 151,264 - +0.9 151,264 - +0.1 151,270 + -0.1 151,280 + +0.8 151,281 + +0.1 151,283 - +0.9 151,288 - +0.9 151,288 - +0.6 151,291 + +0.2 151,298 - -1.0 151,313 + +1.7 151,327 + -0.5 151,327 - +0.3 151,327 - -0.6 151,335 - +0.8 151,335 - +1.9 151,353 - +0.9 151,368 + -0.0 151,368 + -0.6 151,373 + -0.8 151,373 + +2.2 151,373 + +1.7 151,373 + +0.5 151,373 + -0.6 151,376 - -1.1 151,376 - +0.6 151,381 - +0.0 151,381 - -0.0 151,389 - +1.8 151,395 + +0.8 151,399 - -0.1 151,403 - +0.7 151,412 - -0.6 151,416 - -1.9 151,434 + -0.5 151,435 - +1.4 151,435 - +1.3 151,442 - -0.6 151,465 + +0.0 151,473 - -1.2 153,645 + +0.5 153,645 - +0.8 153,653 - +1.3 153,653 - -1.1 153,656 + +0.3 153,656 + -0.9 153,656 + -0.2 153,656 + +1.0 153,656 + +0.6 153,661 + +0.5 153,661 + +1.1 153,663 + +1.7 153,663 + +1.5 153,663 + -1.3 153,663 + +1.7 153,666 + +0.3 153,669 - -0.6 153,669 - +0.7
Or see this region's nucleotide sequence